UHGV-1239414 (vOTU-003837)

Viral Genome: UHGV-1239414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1239414
vOTU ID	vOTU-003837
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2563954\|NODE_10_length_35466_cov_105.408065
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.57
Jumbo phage	No

Genome content
Genome length (bp)	35,411
GC content	44.41%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	666.43
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1239414_1	K14059	251.7	0	int; integrase	N/A
PHROG	UHGV-1239414_1	phrog_1	211.4	0	integrase	integration and excision
UniRef90	UHGV-1239414_1	UniRef90_A0A1C6FGR9	747.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1239414_1	1408823.AXUS01000024_gene2685	172.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1239414_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1239414_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1239414_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1239414_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_2	phrog_9605	381.6	0	N/A	unknown function
UniRef90	UHGV-1239414_2	UniRef90_UPI0014593EBE	436.0	0	N/A	N/A
eggNOG-mapper	UHGV-1239414_2	478749.BRYFOR_09856	383.0	0	N/A	N/A
Pfam	UHGV-1239414_2	PF12358	N/A	N/A	N/A	DUF3644
Pfam	UHGV-1239414_2	PF18740	N/A	N/A	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
structural_annotation	UHGV-1239414_2	PF12358,COG1895	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_3	phrog_10292	54.8	3.5e-16	N/A	unknown function
UniRef90	UHGV-1239414_3	UniRef90_R6T9F1	270.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1239414_3	537013.CLOSTMETH_02269	85.1	2.2e-19	TM2 domain	N/A
Pfam	UHGV-1239414_3	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1239414_3	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1239414_4	K01356	121.9	8.3e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1239414_4	phrog_4	133.5	1.7e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-1239414_4	UniRef90_R6T2B0	429.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-1239414_4	246199.CUS_5911	232.0	0	N/A	N/A
Pfam	UHGV-1239414_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-1239414_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1239414_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1239414_4	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1239414_5	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1239414_5	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-1239414_5	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1239414_6	UniRef90_R6C4T1	105.0	1.65e-28	Putative phage protein	N/A
structural_annotation	UHGV-1239414_6	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_7	phrog_5079	60.1	3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1239414_7	1341157.RF007C_05240	45.4	0.00000395	N/A	N/A
PHROG	UHGV-1239414_8	phrog_14088	40.5	0.000000000018	N/A	unknown function
UniRef90	UHGV-1239414_8	UniRef90_A0A1C6GIT4	254.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1239414_8	626523.GCWU000342_01045	53.1	0.0000000752	N/A	N/A
structural_annotation	UHGV-1239414_9	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_13	phrog_38338	99.7	2.6e-29	N/A	unknown function
UniRef90	UHGV-1239414_13	UniRef90_UPI00137B3A8C	85.9	1.11e-18	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1239414_13	641112.ACOK01000073_gene2869	91.7	2.23e-22	N/A	N/A
PHROG	UHGV-1239414_14	phrog_8470	205.2	0	N/A	unknown function
UniRef90	UHGV-1239414_14	UniRef90_UPI0019175B9C	318.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1239414_14	641112.ACOK01000073_gene2870	409.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1239414_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1239414_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_15	phrog_15609	100.3	1.5e-29	N/A	unknown function
UniRef90	UHGV-1239414_15	UniRef90_A0A373SLQ6	554.0	0	N/A	N/A
eggNOG-mapper	UHGV-1239414_15	641112.ACOK01000073_gene2872	93.6	1.88e-19	N/A	N/A
Pfam	UHGV-1239414_15	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-1239414_15	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_16	phrog_253	110.7	1.1e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_16	UniRef90_UPI0019171ADA	117.0	7.66e-30	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1239414_16	887327.HMPREF0476_0923	62.8	0.000000000566	Siphovirus Gp157	N/A
Pfam	UHGV-1239414_16	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1239414_16	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_17	phrog_2872	246.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_17	UniRef90_A0A373VPJ3	398.0	0	ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-1239414_17	754027.HMPREF9554_00709	219.0	0	N/A	N/A
Pfam	UHGV-1239414_17	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1239414_17	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1239414_18	K19789	327.1	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1239414_18	phrog_16	281.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_18	UniRef90_A0A356CZA9	899.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1239414_18	1410670.JHXF01000015_gene2270	592.0	0	helicase	N/A
PADLOC	UHGV-1239414_18	mREase_IV_00005	107.3	3e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1239414_18	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1239414_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1239414_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1239414_18	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_19	phrog_5702	80.6	8.5e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_19	UniRef90_A0A373SNE0	208.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1239414_19	1410670.JHXF01000015_gene2271	140.0	3.60974e-42	VRR_NUC	N/A
Pfam	UHGV-1239414_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1239414_19	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_20	phrog_378	96.4	3.7e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_20	UniRef90_A0A373SL44	373.0	0	N/A	N/A
eggNOG-mapper	UHGV-1239414_20	1423807.BACO01000050_gene1454	75.5	0.0000000000000177	N/A	N/A
Pfam	UHGV-1239414_20	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1239414_20	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-1239414_21	K06919	110.9	1.1e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1239414_21	phrog_1829	852.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1239414_21	UniRef90_A0A356CZ91	1536.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1239414_21	1410670.JHXF01000015_gene2274	848.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1239414_21	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1239414_21	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1239414_21	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1239414_21	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1239414_21	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1239414_21	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1239414_23	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1239414_25	K06909	419.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1239414_25	phrog_18557	156.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1239414_25	UniRef90_A0A1C6IMR2	1070.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1239414_25	411461.DORFOR_01162	664.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1239414_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1239414_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1239414_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1239414_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1239414_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_26	phrog_533	348.3	0	portal protein	head and packaging
UniRef90	UHGV-1239414_26	UniRef90_R6TDI6	889.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-1239414_26	1304866.K413DRAFT_3035	436.0	0	N/A	N/A
structural_annotation	UHGV-1239414_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_27	phrog_581	335.9	0	minor head protein	head and packaging
UniRef90	UHGV-1239414_27	UniRef90_R6SXL7	1002.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1239414_27	658655.HMPREF0988_02563	410.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1239414_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1239414_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1239414_27	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1239414_28	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_29	phrog_194	101.2	1.1e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1239414_29	UniRef90_R6U550	376.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1239414_29	742765.HMPREF9457_02126	153.0	1.10703e-43	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1239414_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1239414_30	phrog_544	345.4	0	major head protein	head and packaging
UniRef90	UHGV-1239414_30	UniRef90_R6T873	663.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-1239414_30	936580.HMPREF1516_0718	317.0	0	N/A	N/A
NCBIFam	UHGV-1239414_30	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1239414_30	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_31	phrog_541	90.9	1e-26	head-tail adaptor	connector
UniRef90	UHGV-1239414_31	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-1239414_31	1304866.K413DRAFT_3039	96.3	4.97e-24	N/A	N/A
PHROG	UHGV-1239414_32	phrog_3366	74.5	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1239414_32	1449050.JNLE01000003_gene3887	82.4	1.09e-18	N/A	N/A
Pfam	UHGV-1239414_32	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1239414_32	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_33	phrog_556	120.3	7.2e-36	minor head protein	head and packaging
UniRef90	UHGV-1239414_33	UniRef90_A0A1M7NJ72	123.0	1.96e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1239414_33	1449050.JNLE01000003_gene3886	105.0	5.12e-27	N/A	N/A
Pfam	UHGV-1239414_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1239414_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_34	phrog_3266	123.5	9.3e-37	tail completion	connector
eggNOG-mapper	UHGV-1239414_34	411902.CLOBOL_00130	113.0	5.41e-30	N/A	N/A
structural_annotation	UHGV-1239414_34	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_35	phrog_3099	151.2	4.2039e-45	N/A	unknown function
eggNOG-mapper	UHGV-1239414_35	1160721.RBI_II00532	207.0	0	N/A	N/A
structural_annotation	UHGV-1239414_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_36	phrog_11299	177.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1239414_36	411471.SUBVAR_06935	53.9	0.0000034	N/A	N/A
structural_annotation	UHGV-1239414_36	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_37	phrog_706	147.6	6.72623e-44	N/A	unknown function
UniRef90	UHGV-1239414_37	UniRef90_UPI001B3C82AE	216.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1239414_37	1449050.JNLE01000003_gene3882	199.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1239414_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1239414_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_38	phrog_1535	309.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1239414_38	UniRef90_R6TDK7	1279.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1239414_38	1226322.HMPREF1545_00059	399.0	0	tape measure	N/A
COG	UHGV-1239414_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1239414_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_39	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1239414_39	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-1239414_39	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_40	phrog_6616	51.9	2.9e-25	tail protein	tail
eggNOG-mapper	UHGV-1239414_40	1160721.RBI_II00526	764.0	0	N/A	N/A
structural_annotation	UHGV-1239414_40	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_44	phrog_13256	78.1	6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1239414_44	1160721.RBI_II00522	97.8	2.65e-26	N/A	N/A
PHROG	UHGV-1239414_45	phrog_1863	58.3	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1239414_45	1226322.HMPREF1545_04027	72.4	0.00000000000000111	N/A	N/A
KOfam	UHGV-1239414_46	K07273	221.6	0	acm; lysozyme	N/A
PHROG	UHGV-1239414_46	phrog_291	188.4	0	endolysin	lysis
UniRef90	UHGV-1239414_46	UniRef90_A0A1C6IMI8	544.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1239414_46	246199.CUS_5914	300.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1239414_46	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1239414_46	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1239414_46	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1239414_46	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_47	phrog_21664	50.2	0.000000000000052	N/A	unknown function
UniRef90	UHGV-1239414_47	UniRef90_UPI001D013283	83.2	6.85e-18	protein-export chaperone SecB	N/A
eggNOG-mapper	UHGV-1239414_47	861454.HMPREF9099_00705	74.7	0.0000000000000023	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-1239414_47	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-1239414_49	phrog_14664	55.8	3.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1239414_49	883103.HMPREF9703_01676	62.0	0.00000000351	N/A	N/A
structural_annotation	UHGV-1239414_49	PF00644,COG5654	N/A	N/A	N/A	N/A