UHGV-1272822 (vOTU-033393)

Viral Genome: UHGV-1272822

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1272822
vOTU ID	vOTU-033393
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398130_NODE_739_length_31415_cov_6.879688
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.38
Jumbo phage	No

Genome content
Genome length (bp)	31,415
GC content	51.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	93%
Average CDS length (bps)	440.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1272822_2	K03497	53.0	0.0000000000000027	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1272822_2	phrog_21498	292.5	0	N/A	unknown function
UniRef90	UHGV-1272822_2	UniRef90_A0A7X2P836	290.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1272822_2	469378.Ccur_02830	283.0	0	DNA binding	N/A
PADLOC	UHGV-1272822_2	MTase_II_00015	93.4	3e-27	Type II methyltransferase	RM
Pfam	UHGV-1272822_2	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1272822_2	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1272822_2	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_3	phrog_36	60.4	4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1272822_3	UniRef90_UPI001D0837DD	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-1272822_3	1347392.CCEZ01000015_gene2854	65.1	0.000000000028	N/A	N/A
structural_annotation	UHGV-1272822_3	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1272822_4	PF10013,NF001638,COG4338	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_10	phrog_924	57.5	3e-16	N/A	unknown function
UniRef90	UHGV-1272822_10	UniRef90_UPI0015E5EB23	55.5	0.000000126	N/A	N/A
Pfam	UHGV-1272822_10	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1272822_10	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_12	phrog_3136	137.0	5.90003e-41	N/A	unknown function
UniRef90	UHGV-1272822_12	UniRef90_A0A3D0HBD2	142.0	1.61e-39	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1272822_12	97139.C824_00742	67.8	0.0000000000087	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1272822_12	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1272822_12	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_14	phrog_599	53.7	0.0000000000000049	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1272822_14	UniRef90_A0A412AWF1	54.7	0.0000000265	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1272822_14	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1272822_14	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1272822_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1272822_14	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_15	phrog_13321	64.4	8.1e-19	N/A	unknown function
UniRef90	UHGV-1272822_15	UniRef90_UPI00030D2C45	325.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1272822_15	1007096.BAGW01000031_gene122	325.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-1272822_15	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-1272822_15	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-1272822_15	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_16	phrog_111	158.5	0	DNA methyltransferase	other
UniRef90	UHGV-1272822_16	UniRef90_UPI0018970EC5	216.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1272822_16	445972.ANACOL_03344	204.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1272822_16	oMTase_00015	170.9	0	orphan methyltransferase	RM
Pfam	UHGV-1272822_16	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1272822_16	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_17	phrog_757	147.6	5.60519e-44	DNA methyltransferase	other
UniRef90	UHGV-1272822_17	UniRef90_UPI001A9B5584	243.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1272822_17	748224.HMPREF9436_03069	232.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1272822_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1272822_17	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_19	phrog_27197	48.0	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1272822_19	394503.Ccel_3068	53.1	0.000000152	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1272822_19	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-1272822_20	phrog_4433	72.1	5.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1272822_20	445970.ALIPUT_01592	101.0	4.13e-21	DNA-templated transcription, initiation	N/A
COG	UHGV-1272822_20	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-1272822_22	phrog_20437	158.6	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_22	UniRef90_A0A3A6E2X3	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-1272822_22	445971.ANASTE_00700	159.0	1.4013e-44	N/A	N/A
Pfam	UHGV-1272822_22	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1272822_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1272822_22	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_24	phrog_4973	70.0	3.1e-20	N/A	unknown function
UniRef90	UHGV-1272822_24	UniRef90_A0A3D3Y0P8	99.0	1.16e-25	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1272822_24	1072685.IX83_07155	51.6	0.0000000716	Helix-turn-helix domain	N/A
Pfam	UHGV-1272822_24	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1272822_24	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1272822_25	K01160	59.5	1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1272822_25	phrog_140	127.9	5.5e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_25	UniRef90_A0A7G9WF80	132.0	4.91e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1272822_25	1123263.AUKY01000072_gene2102	124.0	1.06e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1272822_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1272822_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1272822_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1272822_26	K03111	114.1	2.1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1272822_26	phrog_44	124.1	1.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_26	UniRef90_A0A1E4LK76	122.0	6.25e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1272822_26	1378168.N510_01674	117.0	1.44e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1272822_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1272822_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1272822_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1272822_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1272822_26	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1272822_27	UniRef90_UPI001D05CADB	112.0	3.38e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1272822_27	445972.ANACOL_01826	87.0	6.05e-21	HNH nucleases	N/A
Pfam	UHGV-1272822_27	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-1272822_28	phrog_72	49.7	0.000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_28	UniRef90_A0A2Z4Q9W9	151.0	2.00386e-43	NinB	N/A
eggNOG-mapper	UHGV-1272822_28	445972.ANACOL_01825	155.0	0	N/A	N/A
structural_annotation	UHGV-1272822_28	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_29	phrog_14970	185.9	0	N/A	unknown function
UniRef90	UHGV-1272822_29	UniRef90_UPI00164BFA28	169.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1272822_29	411470.RUMGNA_02193	141.0	2.69999e-40	double-strand break repair protein	N/A
Pfam	UHGV-1272822_29	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1272822_29	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1272822_29	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1272822_35	UniRef90_A0A396PRZ5	108.0	9.36e-29	N/A	N/A
Pfam	UHGV-1272822_35	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-1272822_36	PF20432,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1272822_38	UniRef90_A0A1C7FQD9	87.0	6.47e-21	Transcriptional regulator	N/A
Pfam	UHGV-1272822_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1272822_38	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_39	phrog_7168	68.7	8e-20	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_39	UniRef90_A0A534BNY9	53.1	0.0000026	GIY-YIG domain-containing protein (Fragment)	N/A
Pfam	UHGV-1272822_39	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1272822_39	PF19835,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_40	phrog_18248	63.5	3.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1272822_40	UniRef90_A0A1V0UW90	71.6	0.0000000000000444	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1272822_40	1589749.A0A0B5A036_9CAUD	71.6	0.000000000000228	sequence-specific DNA binding	N/A
structural_annotation	UHGV-1272822_40	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1272822_41	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
COG	UHGV-1272822_45	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1272822_45	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1272822_46	K14059	147.3	1.90577e-43	int; integrase	N/A
PHROG	UHGV-1272822_46	phrog_1	145.8	3.60134e-43	integrase	integration and excision
UniRef90	UHGV-1272822_46	UniRef90_A0A3D2HVQ9	621.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1272822_46	1514668.JOOA01000001_gene242	150.0	1.55e-39	Phage integrase family	N/A
Pfam	UHGV-1272822_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1272822_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1272822_46	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1272822_48	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_49	phrog_20016	177.2	0	N/A	unknown function
UniRef90	UHGV-1272822_49	UniRef90_A0A345BPX4	164.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1272822_49	1226322.HMPREF1545_00077	151.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1272822_49	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_50	phrog_16490	157.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1272822_50	658655.HMPREF0988_00917	96.7	5.06e-21	N/A	N/A
PHROG	UHGV-1272822_51	phrog_22984	69.1	6e-20	N/A	unknown function
PHROG	UHGV-1272822_52	phrog_21718	48.3	0.00000000000012	N/A	unknown function
UniRef90	UHGV-1272822_52	UniRef90_A0A285PT36	80.9	1.71e-16	Consensus disorder prediction	N/A
PHROG	UHGV-1272822_53	phrog_3754	98.1	9.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1272822_53	476272.RUMHYD_01764	141.0	1.04004e-41	N/A	N/A
structural_annotation	UHGV-1272822_54	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_55	phrog_10091	104.6	7.6e-31	holin	lysis
UniRef90	UHGV-1272822_55	UniRef90_D7GNX3	132.0	1.81e-38	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1272822_55	97139.C824_05950	120.0	1.44e-34	Bacteriophage holin	N/A
Pfam	UHGV-1272822_55	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1272822_55	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1272822_55	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1272822_55	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_56	phrog_355	62.8	5.8e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1272822_56	UniRef90_A0A416ZL61	145.0	1.13505e-43	N/A	N/A
eggNOG-mapper	UHGV-1272822_56	411473.RUMCAL_00360	114.0	4.61e-32	N/A	N/A
Pfam	UHGV-1272822_56	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1272822_56	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_57	phrog_937	56.1	7.5e-16	hemolysin	other
eggNOG-mapper	UHGV-1272822_57	1007096.BAGW01000017_gene814	65.9	0.000000000000972	N/A	N/A
KOfam	UHGV-1272822_58	K08640	96.1	6.2e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1272822_58	phrog_894	56.9	3.6e-16	endolysin	lysis
UniRef90	UHGV-1272822_58	UniRef90_R5EEQ7	213.0	0	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-1272822_58	931626.Awo_c26840	122.0	2.4e-32	Peptidase M15	N/A
Pfam	UHGV-1272822_58	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-1272822_58	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1272822_58	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1272822_58	PF08291,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1272822_59	1203606.HMPREF1526_01926	57.4	0.0000000891	N/A	N/A
structural_annotation	UHGV-1272822_62	PF14686,PF21253,NF040788,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_63	phrog_9534	113.9	2.1e-33	head protein	head and packaging
eggNOG-mapper	UHGV-1272822_63	748224.HMPREF9436_00702	81.3	0.0000000000000125	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1272822_64	phrog_538	128.8	4.5e-38	minor tail protein	tail
UniRef90	UHGV-1272822_64	UniRef90_UPI001C113FEF	333.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1272822_64	768704.Desmer_4453	65.9	0.0000000039	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1272822_64	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1272822_64	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1272822_65	phrog_33	64.3	2.9e-18	distal tail protein Dit	tail
UniRef90	UHGV-1272822_65	UniRef90_UPI001C0FCFFA	451.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1272822_65	536232.CLM_2045	117.0	2.44e-28	Phage tail protein	N/A
COG	UHGV-1272822_65	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1272822_65	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1272822_66	411460.RUMTOR_02094	57.4	0.0000089	Phage-related minor tail protein	N/A
COG	UHGV-1272822_66	COG4487	N/A	N/A	N/A	N/A