UHGV-1277203 (vOTU-113098)

Viral Genome: UHGV-1277203

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1277203
vOTU ID	vOTU-113098
Representative Genome?	Yes
Source	GVD
Original genome ID	Kang_0023_ST003_A_NODE_51_length_30855_cov_19.452435
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.93 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.89
Jumbo phage	No

Genome content
Genome length (bp)	30,855
GC content	55.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	93%
Average CDS length (bps)	777.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1277203_1	phrog_270	75.0	1.6e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1277203_1	498761.HM1_0053	85.5	3.84e-18	HNH endonuclease	N/A
COG	UHGV-1277203_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1277203_2	phrog_9804	161.6	0	N/A	unknown function
UniRef90	UHGV-1277203_2	UniRef90_UPI0018976F94	254.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1277203_2	1121344.JHZO01000003_gene981	203.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1277203_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1277203_2	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_3	phrog_1770	99.7	3.1e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1277203_3	UniRef90_A0A533R9G2	104.0	8.67e-26	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1277203_3	1121438.JNJA01000001_gene2624	92.8	2.23e-21	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1277203_3	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1277203_3	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1277203_4	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_8	phrog_9298	70.9	1.2e-20	radical SAM domain protein	other
UniRef90	UHGV-1277203_8	UniRef90_D4C6F1	372.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1277203_8	742738.HMPREF9460_03770	362.0	0	radical SAM domain protein	N/A
COG	UHGV-1277203_8	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1277203_8	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
UniRef90	UHGV-1277203_9	UniRef90_UPI0018AC14ED	81.3	4.06e-18	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1277203_9	1226322.HMPREF1545_00021	52.8	0.000000222	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1277203_9	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1277203_9	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_11	phrog_25732	46.0	0.00000000000041	N/A	unknown function
UniRef90	UHGV-1277203_11	UniRef90_UPI00187349CE	249.0	0	N/A	N/A
eggNOG-mapper	UHGV-1277203_11	665950.HMPREF1025_02540	72.4	0.000000000000797	N/A	N/A
Pfam	UHGV-1277203_11	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1277203_15	phrog_38832	54.3	7.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1277203_15	445972.ANACOL_00165	70.5	0.00000000000268	N/A	N/A
Pfam	UHGV-1277203_16	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
UniRef90	UHGV-1277203_19	UniRef90_A0A1Y3RJS2	161.0	0	Sigma70_r4_2 domain-containing protein	N/A
KOfam	UHGV-1277203_20	K07487	258.5	0	K07487; transposase	N/A
PHROG	UHGV-1277203_20	phrog_8928	404.5	0	N/A	unknown function
UniRef90	UHGV-1277203_20	UniRef90_UPI001D02F015	830.0	0	IS1182 family transposase	N/A
eggNOG-mapper	UHGV-1277203_20	1507.HMPREF0262_01435	818.0	0	This gene contains a nucleotide ambiguity which may be the result of a sequencing error	N/A
Pfam	UHGV-1277203_20	PF05598	N/A	N/A	N/A	DUF772
Pfam	UHGV-1277203_20	PF13751	N/A	N/A	Transposase DDE domain	DDE_Tnp_1_6
NCBIFam	UHGV-1277203_20	NF033551.1	N/A	N/A	IS1182 family transposase	N/A
COG	UHGV-1277203_20	COG3039	N/A	N/A	Transposase and inactivated derivatives, IS5 family	N/A
structural_annotation	UHGV-1277203_20	PF01609,PF05598,NF033551,COG5421	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_23	phrog_1129	66.8	2.4e-19	holin	lysis
UniRef90	UHGV-1277203_23	UniRef90_UPI0002E32382	120.0	9.12e-34	phage holin family protein	N/A
eggNOG-mapper	UHGV-1277203_23	1007096.BAGW01000036_gene2663	120.0	1.53e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1277203_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1277203_23	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-1277203_24	UniRef90_U2AS96	1024.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1277203_24	1408437.JNJN01000060_gene452	507.0	0	heme binding	N/A
Pfam	UHGV-1277203_24	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-1277203_24	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1277203_26	K01448	153.8	1.4013e-45	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1277203_26	phrog_435	164.6	0	endolysin	lysis
UniRef90	UHGV-1277203_26	UniRef90_A0A1Y4RIN0	585.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1277203_26	1121344.JHZO01000003_gene744	249.0	0	Ami_3	N/A
Pfam	UHGV-1277203_26	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1277203_26	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1277203_26	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1277203_27	UniRef90_A0A8J6JAX9	52.8	0.0000000315	XkdX family protein	N/A
structural_annotation	UHGV-1277203_27	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_28	phrog_24451	59.6	5.1e-17	N/A	unknown function
UniRef90	UHGV-1277203_28	UniRef90_UPI0006907379	65.5	0.0000000000894	N/A	N/A
eggNOG-mapper	UHGV-1277203_28	1408437.JNJN01000040_gene189	145.0	1.14906e-43	N/A	N/A
eggNOG-mapper	UHGV-1277203_29	2754.EH55_00535	79.0	0.000000000000196	N/A	N/A
PHROG	UHGV-1277203_30	phrog_3287	157.4	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1277203_30	1232449.BAHV02000016_gene1816	412.0	0	N/A	N/A
structural_annotation	UHGV-1277203_30	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_31	phrog_13046	144.3	6.40393e-43	N/A	unknown function
structural_annotation	UHGV-1277203_31	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_32	phrog_371	53.9	0.0000000000000028	major head protein	head and packaging
UniRef90	UHGV-1277203_32	UniRef90_R7FUR2	226.0	0	Mu-like prophage major head subunit gpt-like protein	N/A
Pfam	UHGV-1277203_32	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1277203_32	PF19774,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1277203_33	COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1277203_35	phrog_156	103.1	1.8e-30	portal protein	head and packaging
structural_annotation	UHGV-1277203_35	PF12236,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1277203_36	K06909	147.5	1.20512e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1277203_36	phrog_979	168.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1277203_36	UniRef90_UPI0019677368	558.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1277203_36	665956.HMPREF1032_03884	509.0	0	Terminase-like family	N/A
Pfam	UHGV-1277203_36	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1277203_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1277203_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1277203_37	K07474	149.3	4.34403e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1277203_37	phrog_51	139.2	2.4e-41	terminase small subunit	head and packaging
UniRef90	UHGV-1277203_37	UniRef90_A0A6A8VI04	179.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1277203_37	292414.TM1040_0800	127.0	7.73e-35	Terminase small subunit	N/A
Pfam	UHGV-1277203_37	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1277203_37	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1277203_37	PF03592,COG3728	N/A	N/A	N/A	N/A