UHGV-1278455 (vOTU-033407)

Viral Genome: UHGV-1278455

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1278455
vOTU ID	vOTU-033407
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398201_NODE_258_length_50036_cov_24.206578
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.977
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.09
Jumbo phage	No

Genome content
Genome length (bp)	50,036
GC content	37.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	86%
Average CDS length (bps)	681.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1278455_1	K07455	75.5	1.2e-21	recT; recombination protein RecT	N/A
PHROG	UHGV-1278455_1	phrog_148	68.6	1e-19	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1278455_1	UniRef90_A0A8I0LC43	66.2	0.00000000000296	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1278455_1	431943.CKL_0416	107.0	4.87e-27	RecT family	N/A
Pfam	UHGV-1278455_1	PF03837	N/A	N/A	RecT family	RecT
COG	UHGV-1278455_1	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1278455_3	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_4	phrog_15946	59.8	6.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-1278455_4	1041147.AUFB01000014_gene330	60.1	0.00000000315	N/A	N/A
KOfam	UHGV-1278455_5	K19171	78.7	6.2e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1278455_5	phrog_77	170.9	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1278455_5	UniRef90_A0A373NR21	1152.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_5	476272.RUMHYD_03317	508.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1278455_5	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1278455_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1278455_5	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_6	K03111	50.4	2.3e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1278455_6	phrog_26861	100.2	1.5e-29	N/A	unknown function
UniRef90	UHGV-1278455_6	UniRef90_A0A373NQB7	377.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1278455_6	511680.BUTYVIB_01841	153.0	7.14662e-44	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1278455_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1278455_6	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1278455_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1278455_6	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_7	phrog_26861	59.0	6.1e-17	N/A	unknown function
UniRef90	UHGV-1278455_7	UniRef90_UPI001F33AC1F	67.0	0.000000000375	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1278455_7	580327.Tthe_1056	90.5	1.36e-19	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1278455_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1278455_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1278455_7	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278455_10	UniRef90_A0A1Y4F3A4	50.4	0.0000034	50S ribosomal protein L29	N/A
KOfam	UHGV-1278455_11	K07741	120.3	3.9e-35	antB; anti-repressor protein	N/A
PHROG	UHGV-1278455_11	phrog_130	223.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1278455_11	UniRef90_A0A356C696	357.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_11	1232452.BAIB02000007_gene1603	240.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1278455_11	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1278455_11	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1278455_11	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1278455_11	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_13	phrog_2657	107.4	2.7e-32	transcriptional regulator	transcription regulation
UniRef90	UHGV-1278455_13	UniRef90_UPI0015703D70	318.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1278455_13	411459.RUMOBE_01391	306.0	0	N/A	N/A
Pfam	UHGV-1278455_13	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1278455_13	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1278455_13	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1278455_13	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278455_14	UniRef90_A0A1C5ZMM8	104.0	3.01e-28	HTH_8 domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_14	1121335.Clst_0370	91.7	7.77e-24	N/A	N/A
structural_annotation	UHGV-1278455_14	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_15	K22300	60.1	5.3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1278455_15	phrog_8	70.6	3.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1278455_15	UniRef90_A0A1Q6KAD1	98.2	3.72e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_15	1121335.Clst_0369	77.0	1.19e-16	helix-turn-helix	N/A
Pfam	UHGV-1278455_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1278455_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1278455_15	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_18	K07705	135.4	4.6e-40	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-1278455_18	phrog_8810	123.9	1.2e-36	N/A	unknown function
UniRef90	UHGV-1278455_18	UniRef90_UPI001D0E4226	340.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_18	1297617.JPJD01000032_gene2091	131.0	9.41e-35	N/A	N/A
Pfam	UHGV-1278455_18	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-1278455_18	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-1278455_18	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-1278455_18	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_19	K01447	114.8	1.1e-33	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1278455_19	phrog_3088	167.3	0	amidase	lysis
UniRef90	UHGV-1278455_19	UniRef90_A0A173WJQ4	350.0	0	N-acetylmuramoyl-L-alanine amidase CwlH	N/A
eggNOG-mapper	UHGV-1278455_19	457412.RSAG_02159	249.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1278455_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1278455_19	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1278455_19	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1278455_19	PF01510,PF08230,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_21	K03733	192.7	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1278455_21	phrog_1	159.2	0	integrase	integration and excision
UniRef90	UHGV-1278455_21	UniRef90_A0A1C5YVZ3	647.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1278455_21	411459.RUMOBE_00920	439.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1278455_21	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1278455_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1278455_21	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1278455_21	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278455_22	UniRef90_UPI001C0EBDDC	89.7	8.06e-20	pyocin knob domain-containing protein	N/A
PHROG	UHGV-1278455_23	phrog_6616	714.9	0	tail protein	tail
UniRef90	UHGV-1278455_23	UniRef90_R5QUN9	911.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_23	476272.RUMHYD_01992	360.0	0	N/A	N/A
structural_annotation	UHGV-1278455_23	PF05113,PF18957,PF16407,NF033848,NF011782,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_24	phrog_1194	121.8	3.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-1278455_24	1117108.PAALTS15_13512	73.9	0.00000000000000237	N/A	N/A
structural_annotation	UHGV-1278455_24	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278455_26	PF01017,TIGR02890	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_27	K07741	112.9	6.5e-33	antB; anti-repressor protein	N/A
PHROG	UHGV-1278455_27	phrog_5817	122.1	6.7e-36	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1278455_27	UniRef90_A0A173UG87	321.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1278455_27	476272.RUMHYD_01982	321.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1278455_27	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1278455_27	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1278455_27	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_28	658655.HMPREF0988_02544	94.0	7.02e-25	N/A	N/A
structural_annotation	UHGV-1278455_28	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_30	phrog_215	68.6	1.6e-21	structural protein with Ig domain	head and packaging
UniRef90	UHGV-1278455_30	UniRef90_A0A839JXV0	122.0	1.63e-28	Ig domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_30	1449050.JNLE01000005_gene4607	80.1	0.000000000000179	Trypsin	N/A
Pfam	UHGV-1278455_30	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1278455_30	COG0265	N/A	N/A	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	N/A
structural_annotation	UHGV-1278455_30	PF02368,PF11906,NF005261	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_31	1235793.C809_00537	57.0	0.000000000912	N/A	N/A
PHROG	UHGV-1278455_32	phrog_21101	44.7	0.000000000002	N/A	unknown function
UniRef90	UHGV-1278455_32	UniRef90_A0A412EKK3	136.0	4.38e-40	N/A	N/A
eggNOG-mapper	UHGV-1278455_32	1410626.JHXB01000002_gene645	110.0	1.42e-30	Protein conserved in bacteria	N/A
Pfam	UHGV-1278455_32	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-1278455_32	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278455_32	PF07866,COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_33	1304866.K413DRAFT_3400	85.5	2.45e-19	N/A	N/A
PHROG	UHGV-1278455_34	phrog_6493	104.9	7.1e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1278455_34	UniRef90_UPI001020B14A	118.0	4.21e-27	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1278455_34	1121422.AUMW01000049_gene1257	136.0	1.23e-34	Transcriptional regulator	N/A
COG	UHGV-1278455_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1278455_34	PF05584,NF000243,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278455_35	PF12990	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_36	phrog_28918	553.0	0	N/A	unknown function
UniRef90	UHGV-1278455_36	UniRef90_A0A1C5P271	404.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1278455_36	97139.C824_02812	552.0	0	phage tail tape measure protein	N/A
COG	UHGV-1278455_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
eggNOG-mapper	UHGV-1278455_39	476272.RUMHYD_01968	127.0	2.8e-35	N/A	N/A
structural_annotation	UHGV-1278455_39	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_40	phrog_1129	84.6	6.4e-25	holin	lysis
UniRef90	UHGV-1278455_40	UniRef90_UPI001D072DD9	131.0	7.75e-38	phage holin family protein	N/A
eggNOG-mapper	UHGV-1278455_40	1304866.K413DRAFT_0135	126.0	8.75e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1278455_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1278455_40	PF16079	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278455_41	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_42	476272.RUMHYD_01963	94.7	4.37e-22	N/A	N/A
AcrCatalog	UHGV-1278455_42	cluster_24841	75.9	2.41e-19	NA	N/A
structural_annotation	UHGV-1278455_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_44	phrog_28673	180.5	0	tail protein	tail
UniRef90	UHGV-1278455_44	UniRef90_UPI0015C565BB	79.0	0.0000000000144	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1278455_44	1540090.A0A0A0RS40_9CAUD	162.0	8.43e-39	N/A	N/A
structural_annotation	UHGV-1278455_44	PF10651,PF14606	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_45	phrog_19695	60.1	6.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1278455_45	1232452.BAIB02000007_gene1611	93.6	1.86e-23	N/A	N/A
structural_annotation	UHGV-1278455_45	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_48	1408437.JNJN01000043_gene802	164.0	0	N/A	N/A
PHROG	UHGV-1278455_49	phrog_16490	226.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1278455_49	1408437.JNJN01000043_gene803	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-1278455_50	476272.RUMHYD_01953	108.0	2.89e-30	N/A	N/A
PHROG	UHGV-1278455_51	phrog_21718	62.5	8.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1278455_51	476272.RUMHYD_01952	100.0	1.73e-24	N/A	N/A
UniRef90	UHGV-1278455_52	UniRef90_A0A373NQ83	154.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-1278455_52	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1278455_52	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_53	phrog_937	59.7	2.4e-17	hemolysin	other
eggNOG-mapper	UHGV-1278455_54	476272.RUMHYD_01948	111.0	1.53e-30	N/A	N/A
PHROG	UHGV-1278455_55	phrog_29	152.7	2.8026e-45	major head protein	head and packaging
UniRef90	UHGV-1278455_55	UniRef90_A0A0E2H7J5	380.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1278455_55	1232443.BAIA02000078_gene29	279.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1278455_55	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1278455_55	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_56	phrog_909	72.9	4e-21	major head protein	head and packaging
UniRef90	UHGV-1278455_56	UniRef90_K1TUL5	67.8	0.00000000000284	N/A	N/A
eggNOG-mapper	UHGV-1278455_56	1497679.EP56_02915	67.0	0.00000000000066	N/A	N/A
structural_annotation	UHGV-1278455_56	PF02924	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1278455_57	1298920.KI911353_gene2662	53.5	0.00000543	N/A	N/A
PHROG	UHGV-1278455_58	phrog_64	180.5	0	portal protein	head and packaging
UniRef90	UHGV-1278455_58	UniRef90_A0A373NRD8	982.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1278455_58	1298920.KI911353_gene2663	570.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1278455_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1278455_58	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_59	phrog_36	66.2	6.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1278455_59	UniRef90_A0A373NRA4	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-1278455_59	97138.C820_00221	72.4	0.0000000000000299	sigma factor activity	N/A
Pfam	UHGV-1278455_59	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1278455_59	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1278455_59	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1278455_60	phrog_38	179.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1278455_60	UniRef90_A0A8D9PG33	500.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1278455_60	1232453.BAIF02000058_gene1623	459.0	0	TIGRFAM Phage	N/A
COG	UHGV-1278455_60	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1278455_60	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1278455_61	K17080	49.3	8.5e-16	PHB1; prohibitin 1	N/A
PHROG	UHGV-1278455_61	phrog_200	155.6	0	lipoprotein	other
UniRef90	UHGV-1278455_61	UniRef90_A0A373NQU6	390.0	0	Prohibitin family protein	N/A
eggNOG-mapper	UHGV-1278455_61	1414720.CBYM010000001_gene771	172.0	0	prohibitin homologues	N/A
Pfam	UHGV-1278455_61	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-1278455_61	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-1278455_61	PF01145,MF_01562,TIGR01932,COG0330	N/A	N/A	N/A	N/A
UniRef90	UHGV-1278455_63	UniRef90_R8TJH1	156.0	1.68156e-44	N/A	N/A