UHGV-1280883 (vOTU-012370)

Viral Genome: UHGV-1280883

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1280883
vOTU ID	vOTU-012370
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398093_NODE_49_length_41958_cov_142.112808
Associated BioSample	SAMEA3951762
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.46 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.16
Jumbo phage	No

Genome content
Genome length (bp)	41,936
GC content	54.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	86%
Average CDS length (bps)	509.75
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1280883_1	phrog_4433	152.8	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1280883_1	UniRef90_A0A6M5C839	99.4	7.59e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1280883_1	33035.JPJF01000122_gene2458	100.0	7.29e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1280883_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1280883_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_2	phrog_463	214.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-1280883_2	UniRef90_B0MB86	280.0	0	BRO family, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1280883_2	411490.ANACAC_00813	280.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1280883_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1280883_2	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1280883_2	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1280883_2	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_3	UniRef90_A0A1C7FQD9	80.5	1.68e-18	Transcriptional regulator	N/A
Pfam	UHGV-1280883_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1280883_3	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_4	phrog_8	45.4	0.0000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1280883_4	UniRef90_UPI001C020D87	115.0	7.76e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1280883_4	1226322.HMPREF1545_00148	84.7	1.15e-19	Transcriptional	N/A
Pfam	UHGV-1280883_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1280883_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1280883_5	PF21715,NF008122,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1280883_8	321955.AAGP01000017_gene2211	55.1	0.00000055	N/A	N/A
structural_annotation	UHGV-1280883_8	PF16900,NF040991	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_11	UniRef90_UPI0018CC79B4	329.0	0	helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-1280883_12	K14059	118.6	9.5e-35	int; integrase	N/A
PHROG	UHGV-1280883_12	phrog_1	104.7	1.1e-30	integrase	integration and excision
UniRef90	UHGV-1280883_12	UniRef90_A0A6N7TNW8	741.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1280883_12	748224.HMPREF9436_03382	740.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1280883_12	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1280883_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1280883_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1280883_12	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1280883_14	476272.RUMHYD_01772	55.1	0.000000184	N/A	N/A
structural_annotation	UHGV-1280883_14	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_15	phrog_20016	197.8	0	N/A	unknown function
UniRef90	UHGV-1280883_15	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1280883_15	1226322.HMPREF1545_00077	174.0	0	N/A	N/A
structural_annotation	UHGV-1280883_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_16	phrog_16490	149.3	2.10195e-44	N/A	unknown function
eggNOG-mapper	UHGV-1280883_16	1408437.JNJN01000043_gene803	148.0	3.69004e-41	N/A	N/A
PHROG	UHGV-1280883_17	phrog_22984	79.5	2.4e-23	N/A	unknown function
PHROG	UHGV-1280883_18	phrog_21718	124.8	5.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1280883_18	476272.RUMHYD_01768	94.4	1.19e-22	N/A	N/A
PHROG	UHGV-1280883_19	phrog_3754	96.5	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1280883_19	1485543.JMME01000025_gene2462	108.0	2.96e-29	N/A	N/A
PHROG	UHGV-1280883_21	phrog_1454	42.6	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-1280883_21	742740.HMPREF9474_04325	51.2	0.000000073	N/A	N/A
PHROG	UHGV-1280883_22	phrog_15303	76.5	3.1e-22	N/A	unknown function
PHROG	UHGV-1280883_23	phrog_4105	102.3	2.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-1280883_23	657322.FPR_27220	139.0	1.18003e-41	N/A	N/A
KOfam	UHGV-1280883_24	K07273	165.0	0	acm; lysozyme	N/A
PHROG	UHGV-1280883_24	phrog_291	122.4	4.2e-36	endolysin	lysis
UniRef90	UHGV-1280883_24	UniRef90_A0A564U0D3	339.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1280883_24	718252.FP2_04890	289.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1280883_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1280883_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1280883_24	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_25	phrog_28526	105.9	1.6e-31	N/A	unknown function
UniRef90	UHGV-1280883_25	UniRef90_A0A415D4T1	78.6	2.52e-18	N/A	N/A
eggNOG-mapper	UHGV-1280883_25	411462.DORLON_00769	83.2	6.22e-21	N/A	N/A
Pfam	UHGV-1280883_25	PF04255	N/A	N/A	N/A	DUF433
PHROG	UHGV-1280883_27	phrog_24267	66.0	7.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1280883_27	508419.F8J176_9CAUD	87.4	6.42e-18	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1280883_27	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_28	phrog_23587	76.7	3.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1280883_28	748224.HMPREF9436_00405	108.0	8.52e-23	domain, Protein	N/A
COG	UHGV-1280883_28	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_28	MF_04106	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_29	UniRef90_A0A417QGC1	98.2	3.55e-22	MtfA protein	N/A
eggNOG-mapper	UHGV-1280883_29	1235792.C808_00094	104.0	2.45e-25	phage tail	N/A
COG	UHGV-1280883_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1280883_29	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_31	phrog_3558	281.0	0	tail protein	tail
UniRef90	UHGV-1280883_31	UniRef90_UPI001C01D15B	1337.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1280883_31	1120933.ATUY01000004_gene1009	129.0	1.74e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1280883_31	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1280883_31	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1280883_31	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_32	phrog_9959	79.3	2.6e-23	tail length tape measure protein	tail
UniRef90	UHGV-1280883_32	UniRef90_UPI001C038824	1244.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1280883_32	1492737.FEM08_12070	137.0	7.68e-31	tape measure	N/A
Pfam	UHGV-1280883_32	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1280883_32	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1280883_32	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1280883_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_35	phrog_885	69.2	5.1e-20	major tail protein	tail
eggNOG-mapper	UHGV-1280883_35	1111121.HMPREF1247_0789	149.0	4.55422e-43	N/A	N/A
structural_annotation	UHGV-1280883_35	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_36	UniRef90_A0A415JI88	65.1	0.0000000000494	N/A	N/A
structural_annotation	UHGV-1280883_36	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_37	phrog_17977	43.0	0.0000000000065	N/A	unknown function
UniRef90	UHGV-1280883_37	UniRef90_A0A844DHJ8	117.0	1.33e-31	Phage head closure protein	N/A
structural_annotation	UHGV-1280883_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_39	phrog_544	139.7	2.20004e-41	major head protein	head and packaging
UniRef90	UHGV-1280883_39	UniRef90_R0BKA1	437.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1280883_39	476272.RUMHYD_01776	320.0	0	N/A	N/A
structural_annotation	UHGV-1280883_39	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_43	phrog_5	49.4	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-1280883_43	UniRef90_A0A6N7TNP6	296.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1280883_43	1123309.AQYB01000018_gene814	92.8	3.98e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1280883_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1280883_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_45	phrog_2468	80.0	4.4e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1280883_45	UniRef90_A0A6N7TLR7	617.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1280883_45	1504822.CCNO01000013_gene286	112.0	1.79e-24	cell adhesion	N/A
Pfam	UHGV-1280883_45	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1280883_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_45	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_46	phrog_64	121.6	3.2e-36	portal protein	head and packaging
UniRef90	UHGV-1280883_46	UniRef90_A0A6N7TNT3	875.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1280883_46	1042156.CXIVA_01850	80.9	0.000000000000185	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1280883_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1280883_46	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1280883_47	K06909	143.4	2.10055e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1280883_47	phrog_10250	176.4	0	N/A	unknown function
UniRef90	UHGV-1280883_47	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1280883_47	411490.ANACAC_00783	490.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1280883_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1280883_47	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1280883_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1280883_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1280883_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_48	UniRef90_UPI0018CC2891	118.0	3.79e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1280883_48	1235790.C805_00037	109.0	2.18e-28	N/A	N/A
structural_annotation	UHGV-1280883_48	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_49	phrog_21498	297.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1280883_49	78346.BRUM_0376	266.0	0	DNA binding	N/A
COG	UHGV-1280883_49	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1280883_50	phrog_36	60.4	3.7e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1280883_50	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1280883_51	K01160	55.5	0.0000000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1280883_51	phrog_34	58.7	1.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1280883_51	UniRef90_UPI0012DF3C2B	243.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1280883_51	875454.BAEW01000002_gene491	132.0	2.09e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1280883_51	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1280883_51	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1280883_51	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_52	phrog_3136	86.3	2.9e-25	N/A	unknown function
UniRef90	UHGV-1280883_52	UniRef90_UPI001CBCD733	131.0	1.35e-36	ASCH domain-containing protein	N/A
structural_annotation	UHGV-1280883_52	PF04033,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_57	phrog_3136	139.6	9.00054e-42	N/A	unknown function
UniRef90	UHGV-1280883_57	UniRef90_UPI001C02A61B	309.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1280883_57	1235792.C808_00630	69.7	0.00000000000627	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1280883_57	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1280883_57	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1280883_57	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_58	UniRef90_A0A845R8R0	99.0	4.33e-24	N/A	N/A
structural_annotation	UHGV-1280883_58	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_60	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_61	phrog_5968	71.2	1.3e-20	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1280883_61	UniRef90_UPI001C02E649	504.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1280883_61	718252.FP2_01000	167.0	0	N/A	N/A
Pfam	UHGV-1280883_61	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1280883_61	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1280883_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1280883_61	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1280883_62	K03111	142.2	5.70048e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1280883_62	phrog_44	142.1	3.09967e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1280883_62	UniRef90_UPI001C00AA91	304.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1280883_62	718252.FP2_06770	225.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1280883_62	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1280883_62	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1280883_62	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1280883_62	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1280883_62	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_63	phrog_7838	111.2	8.5e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1280883_63	UniRef90_A0A8D9UGW3	190.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1280883_63	742767.HMPREF9456_02397	139.0	2.47e-38	N/A	N/A
structural_annotation	UHGV-1280883_63	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_65	PF06718	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1280883_67	596152.DesU5LDRAFT_1910	103.0	1.72e-24	N/A	N/A
structural_annotation	UHGV-1280883_67	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_68	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1280883_69	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1280883_70	UniRef90_UPI00130EBC54	145.0	1.05097e-43	N/A	N/A
eggNOG-mapper	UHGV-1280883_70	445972.ANACOL_01800	48.1	0.00000285	N/A	N/A
COG	UHGV-1280883_70	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1280883_70	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1280883_71	phrog_27197	84.9	8.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1280883_71	573061.Clocel_3578	58.5	0.0000000394	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1280883_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1280883_71	NF007410	N/A	N/A	N/A	N/A