UHGV-1290121 (vOTU-150826)

Viral Genome: UHGV-1290121

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1290121
vOTU ID	vOTU-150826
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398222_NODE_1245_length_21238_cov_4.137658
Associated BioSample	SAMEA3951685
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.55
Jumbo phage	No

Genome content
Genome length (bp)	21,238
GC content	53.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	89%
Average CDS length (bps)	512.84
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1290121_1	K14059	159.5	0	int; integrase	N/A
PHROG	UHGV-1290121_1	phrog_1	166.4	0	integrase	integration and excision
UniRef90	UHGV-1290121_1	UniRef90_UPI0019575017	466.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1290121_1	1507.HMPREF0262_00307	206.0	0	Phage integrase family	N/A
Pfam	UHGV-1290121_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1290121_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1290121_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1290121_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1290121_2	UniRef90_A0A845R7F5	56.6	0.0000019	XRE family transcriptional regulator	N/A
Pfam	UHGV-1290121_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1290121_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1290121_2	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_4	phrog_585	66.7	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1290121_4	416870.llmg_2131	52.8	0.00000108	N/A	N/A
Pfam	UHGV-1290121_4	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1290121_4	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_5	phrog_8	44.2	0.0000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-1290121_5	UniRef90_UPI001E54DE4F	74.7	0.00000000000000313	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1290121_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1290121_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-1290121_6	UniRef90_UPI001967CDDD	84.3	4.42e-20	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1290121_6	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_7	K07741	84.8	2.5e-24	antB; anti-repressor protein	N/A
PHROG	UHGV-1290121_7	phrog_130	235.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1290121_7	UniRef90_A0A6N2R468	352.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1290121_7	1289596.M1PKL6_9CAUD	270.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1290121_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1290121_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1290121_7	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1290121_8	PF21611	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_9	K22300	58.9	1.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1290121_9	phrog_8	53.0	0.0000000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-1290121_9	UniRef90_A0A838JA74	65.1	0.00000000000198	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1290121_9	479434.Sthe_2230	60.8	0.0000000000173	sequence-specific DNA binding	N/A
Pfam	UHGV-1290121_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1290121_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1290121_9	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1290121_11	PF11034	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_13	K00558	49.8	0.000000000000042	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1290121_13	phrog_757	122.9	1.9e-36	DNA methyltransferase	other
UniRef90	UHGV-1290121_13	UniRef90_A0A2V2GLN0	365.0	0	DNA methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1290121_13	411473.RUMCAL_00286	346.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1290121_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1290121_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1290121_13	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_16	phrog_253	113.1	2.5e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1290121_16	UniRef90_A0A843H617	156.0	0	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1290121_16	748224.HMPREF9436_03356	154.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1290121_16	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1290121_16	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_17	phrog_14970	252.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1290121_17	411468.CLOSCI_00315	203.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1290121_17	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1290121_17	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1290121_17	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_18	K03111	121.3	1.4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1290121_18	phrog_44	124.3	1.1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1290121_18	UniRef90_R6FJ83	132.0	4.78e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1290121_18	1408436.JHXY01000007_gene409	130.0	7.54e-37	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1290121_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1290121_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1290121_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1290121_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1290121_18	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_19	K01160	45.2	0.0000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1290121_19	phrog_1682	68.8	1e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1290121_19	UniRef90_UPI0009406B47	100.0	5.86e-25	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1290121_19	220668.lp_2433	97.1	2.26e-24	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1290121_19	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1290121_19	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1290121_19	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_20	phrog_22740	55.6	9.4e-16	N/A	unknown function
UniRef90	UHGV-1290121_20	UniRef90_A0A1M6L1D4	78.2	4.39e-17	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-1290121_20	1121121.KB894312_gene3179	80.5	9.71e-18	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1290121_20	oMTase_00015	54.9	0.0000000000000026	orphan methyltransferase	RM
Pfam	UHGV-1290121_20	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-1290121_21	phrog_236	73.9	3.5e-21	nucleotide kinase	other
UniRef90	UHGV-1290121_21	UniRef90_UPI000D110E3A	98.2	1.6e-24	N/A	N/A
eggNOG-mapper	UHGV-1290121_21	1123263.AUKY01000015_gene1590	71.6	0.00000000000000605	N/A	N/A
Pfam	UHGV-1290121_21	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1290121_21	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_24	phrog_6721	285.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1290121_24	665950.HMPREF1025_01974	272.0	0	N/A	N/A
structural_annotation	UHGV-1290121_24	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_25	phrog_599	47.9	0.0000000000003	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1290121_25	UniRef90_A0A845MWR1	68.6	0.0000000000000531	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1290121_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1290121_25	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1290121_25	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1290121_25	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_26	phrog_3136	134.5	3.3e-40	N/A	unknown function
UniRef90	UHGV-1290121_26	UniRef90_UPI001A9A8D4F	123.0	2.14e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1290121_26	97139.C824_00742	61.2	0.00000000182	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1290121_26	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1290121_26	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_28	phrog_1163	247.4	0	N/A	unknown function
UniRef90	UHGV-1290121_28	UniRef90_A0A0Q9XWV0	201.0	0	Replication protein	N/A
eggNOG-mapper	UHGV-1290121_28	1122947.FR7_2509	198.0	0	Transcriptional regulator	N/A
Pfam	UHGV-1290121_28	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1290121_28	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1290121_28	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1290121_28	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1290121_28	PF09681,PF09524,TIGR01714,TIGR02220,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_29	K02315	120.0	2.4e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1290121_29	phrog_50	121.0	1.2e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1290121_29	UniRef90_UPI001AA0C12C	241.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1290121_29	445972.ANACOL_01829	202.0	0	N/A	N/A
Pfam	UHGV-1290121_29	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1290121_29	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1290121_29	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_30	phrog_36	40.1	0.000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-1290121_30	UniRef90_A0A6N7XL46	77.8	0.00000000000000165	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-1290121_30	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_31	phrog_606	100.2	2.1e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1290121_31	UniRef90_UPI00195648BB	189.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1290121_31	445972.ANACOL_01838	159.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1290121_31	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1290121_31	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1290121_32	K06909	393.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1290121_32	phrog_3717	156.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1290121_32	UniRef90_UPI001C3B9235	640.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1290121_32	411471.SUBVAR_06507	565.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1290121_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1290121_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1290121_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1290121_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1290121_32	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_33	phrog_64	162.2	0	portal protein	head and packaging
UniRef90	UHGV-1290121_33	UniRef90_UPI0018A8A301	586.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1290121_33	673376.F2VHW1_9CAUD	197.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1290121_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1290121_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_35	phrog_8680	225.8	0	N/A	unknown function
UniRef90	UHGV-1290121_35	UniRef90_A0A373MX42	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-1290121_35	411470.RUMGNA_02208	238.0	0	N/A	N/A
Pfam	UHGV-1290121_35	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1290121_35	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_36	phrog_115	106.8	1.5e-32	minor head protein	head and packaging
UniRef90	UHGV-1290121_36	UniRef90_A0A7X5E1T7	415.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1290121_36	1111121.HMPREF1247_0797	172.0	3.78351e-44	cell adhesion	N/A
Pfam	UHGV-1290121_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1290121_36	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1290121_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1290121_36	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1290121_37	phrog_5	79.3	7.6e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1290121_37	UniRef90_A0A3A9EIF3	186.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1290121_37	1280685.AUKC01000004_gene1630	102.0	3.9e-26	N/A	N/A
Pfam	UHGV-1290121_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1290121_37	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1290121_37	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A