UHGV-1295601 (vOTU-108163)

Viral Genome: UHGV-1295601

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1295601
vOTU ID	vOTU-108163
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398083_NODE_316_length_31271_cov_125.400724
Associated BioSample	SAMEA3951616
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.32 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.9
Jumbo phage	No

Genome content
Genome length (bp)	31,271
GC content	59.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	93%
Average CDS length (bps)	710.85
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1295601_1	657322.FPR_13550	78.2	1.85e-16	Bacterial Ig-like domain (group 2)	N/A
COG	UHGV-1295601_1	COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1295601_2	1304866.K413DRAFT_1235	60.5	0.0000000147	PFAM Phage tail protein	N/A
COG	UHGV-1295601_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-1295601_4	phrog_3558	281.5	0	tail protein	tail
UniRef90	UHGV-1295601_4	UniRef90_A0A3E2U3C8	1249.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1295601_4	658088.HMPREF0987_01107	119.0	8.54e-26	Prophage endopeptidase tail	N/A
Pfam	UHGV-1295601_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1295601_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1295601_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_5	phrog_28775	301.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1295601_5	748224.HMPREF9436_00699	932.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1295601_5	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_6	phrog_1633	42.9	0.0000000000085	N/A	unknown function
eggNOG-mapper	UHGV-1295601_6	1214184.ALKY01000039_gene910	49.7	0.00000414	N/A	N/A
PHROG	UHGV-1295601_7	phrog_1526	87.3	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1295601_7	936375.HMPREF1152_0686	83.2	9.9e-20	N/A	N/A
PHROG	UHGV-1295601_8	phrog_117	156.6	0	major tail protein	tail
UniRef90	UHGV-1295601_8	UniRef90_A0A3E2U249	363.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1295601_8	748224.HMPREF9436_00696	242.0	0	domain, Protein	N/A
COG	UHGV-1295601_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1295601_8	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_9	phrog_123	51.6	0.000000000000019	tail terminator	connector
eggNOG-mapper	UHGV-1295601_9	748224.HMPREF9436_00695	179.0	0	N/A	N/A
structural_annotation	UHGV-1295601_9	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_10	phrog_387	64.1	2e-18	neck protein	connector
eggNOG-mapper	UHGV-1295601_10	1321784.HMPREF1987_01077	49.7	0.000000653	N/A	N/A
PHROG	UHGV-1295601_11	phrog_501	82.3	5.5e-24	head closure Hc1	connector
UniRef90	UHGV-1295601_11	UniRef90_A0A139QHM6	134.0	1.8e-38	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1295601_11	748224.HMPREF9436_00693	197.0	0	N/A	N/A
structural_annotation	UHGV-1295601_11	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_12	phrog_137	65.7	5.9e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-1295601_12	UniRef90_E2ZGA8	196.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1295601_12	762211.BSTEL_0628	53.9	0.000000191	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-1295601_12	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_13	phrog_267	103.8	1.8e-30	major head protein	head and packaging
UniRef90	UHGV-1295601_13	UniRef90_A0A4P8IA69	385.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-1295601_13	748224.HMPREF9436_03335	444.0	0	N/A	N/A
structural_annotation	UHGV-1295601_13	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_14	phrog_194	78.3	1.3e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-1295601_14	UniRef90_D4K444	222.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1295601_14	748224.HMPREF9436_03336	254.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1295601_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1295601_14	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_16	phrog_193	120.8	1.3e-35	head maturation protease	head and packaging
UniRef90	UHGV-1295601_16	UniRef90_A0A6N8H118	310.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1295601_16	748224.HMPREF9436_01469	359.0	0	N/A	N/A
COG	UHGV-1295601_16	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-1295601_17	phrog_104	226.0	0	portal protein	head and packaging
UniRef90	UHGV-1295601_17	UniRef90_A0A3E2U200	887.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1295601_17	748224.HMPREF9436_01468	773.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1295601_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1295601_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_18	phrog_9	174.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1295601_18	UniRef90_UPI001F1A3C47	620.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1295601_18	748224.HMPREF9436_01467	798.0	0	phage terminase, large subunit	N/A
COG	UHGV-1295601_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1295601_18	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-1295601_19	UniRef90_R6GFM0	86.7	2.14e-20	Conserved domain protein	N/A
structural_annotation	UHGV-1295601_19	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_20	phrog_338	52.6	0.000000000000009	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1295601_20	UniRef90_UPI0015F33F36	262.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1295601_20	748224.HMPREF9436_01465	218.0	0	N/A	N/A
PHROG	UHGV-1295601_21	phrog_36	78.3	1.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1295601_21	UniRef90_A0A3A6JSY6	92.4	2.04e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1295601_21	748224.HMPREF9436_01463	101.0	1.29e-25	N/A	N/A
structural_annotation	UHGV-1295601_21	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1295601_22	K01160	46.9	0.00000000000077	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1295601_22	phrog_140	90.9	1.5e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1295601_22	UniRef90_UPI00122CFAB3	257.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1295601_22	478749.BRYFOR_07588	149.0	1.68156e-44	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1295601_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1295601_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1295601_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1295601_23	K07505	369.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1295601_23	phrog_2597	1095.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1295601_23	UniRef90_A0A2A6Z731	1387.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1295601_23	742738.HMPREF9460_01357	862.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1295601_23	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1295601_23	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1295601_23	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1295601_23	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1295601_24	K17677	347.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1295601_24	phrog_16	273.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1295601_24	UniRef90_A0A3A6K1C0	995.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1295601_24	610130.Closa_1369	767.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1295601_24	mREase_IV_00005	143.4	1.90016e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1295601_24	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1295601_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1295601_24	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1295601_24	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_25	phrog_2698	193.9	0	N/A	unknown function
UniRef90	UHGV-1295601_25	UniRef90_A0A291T9B6	289.0	0	N/A	N/A
eggNOG-mapper	UHGV-1295601_25	394503.Ccel_3308	131.0	7e-37	N/A	N/A
structural_annotation	UHGV-1295601_25	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1295601_26	phrog_124	229.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1295601_26	UniRef90_UPI00122C2B12	576.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1295601_26	645991.Sgly_0321	379.0	0	AAA domain	N/A
Pfam	UHGV-1295601_26	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1295601_26	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1295601_27	K03546	62.2	6.7e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1295601_27	phrog_1499	469.9	0	N/A	unknown function
UniRef90	UHGV-1295601_27	UniRef90_A0A3A6KBP8	749.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1295601_27	1235798.C817_04766	493.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1295601_27	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1295601_27	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1295601_27	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-1295601_28	UniRef90_UPI00196846D9	275.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1295601_28	665956.HMPREF1032_03597	251.0	0	DNA binding	N/A
COG	UHGV-1295601_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1295601_29	UniRef90_UPI001D0E65C2	108.0	2.39e-28	N/A	N/A
Pfam	UHGV-1295601_29	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-1295601_29	PF12957	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1295601_31	PF07875,TIGR02501	N/A	N/A	N/A	N/A
UniRef90	UHGV-1295601_34	UniRef90_A0A2A7BGV7	75.9	1.92e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1295601_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1295601_34	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1295601_36	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1295601_38	K18830	70.9	2e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1295601_38	phrog_8	59.5	3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1295601_38	UniRef90_A0A564SVW9	213.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1295601_38	748224.HMPREF9436_01444	190.0	0	N/A	N/A
Pfam	UHGV-1295601_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1295601_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1295601_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1295601_40	748224.HMPREF9436_01443	592.0	0	vancomycin resistance protein	N/A
COG	UHGV-1295601_40	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-1295601_41	K14059	156.5	0	int; integrase	N/A
PHROG	UHGV-1295601_41	phrog_1	140.2	1.90002e-41	integrase	integration and excision
UniRef90	UHGV-1295601_41	UniRef90_A0A2A7AII9	680.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1295601_41	748224.HMPREF9436_03382	327.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1295601_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1295601_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1295601_41	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A