UHGV-1306094 (vOTU-033481)

Viral Genome: UHGV-1306094

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1306094
vOTU ID	vOTU-033481
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398248_NODE_592_length_20250_cov_85.876900
Associated BioSample	SAMEA3951638
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.44
Jumbo phage	No

Genome content
Genome length (bp)	20,250
GC content	60.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	24
CDS density	94%
Average CDS length (bps)	789.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1306094_1	phrog_581	340.2	0	minor head protein	head and packaging
UniRef90	UHGV-1306094_1	UniRef90_A0A1C5NZK4	1019.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1306094_1	748224.HMPREF9436_03339	653.0	0	N/A	N/A
Pfam	UHGV-1306094_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1306094_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1306094_1	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1306094_2	phrog_533	270.4	0	portal protein	head and packaging
UniRef90	UHGV-1306094_2	UniRef90_UPI00110638F1	374.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1306094_2	718252.FP2_06700	696.0	0	N/A	N/A
Pfam	UHGV-1306094_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1306094_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_3	K06909	89.8	3.9e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1306094_3	phrog_2	116.6	3.9e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1306094_3	UniRef90_A0A844EGH8	808.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1306094_3	1449050.JNLE01000003_gene3895	408.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1306094_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1306094_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1306094_3	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1306094_4	phrog_2412	89.4	3.7e-26	N/A	unknown function
UniRef90	UHGV-1306094_4	UniRef90_UPI000DE85101	68.2	0.00000000000596	stress-induced protein	N/A
eggNOG-mapper	UHGV-1306094_4	742738.HMPREF9460_02504	114.0	8.14e-31	N/A	N/A
PHROG	UHGV-1306094_5	phrog_36	78.3	1.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1306094_5	UniRef90_A0A3A6JSY6	92.4	2.04e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1306094_5	748224.HMPREF9436_01463	101.0	1.29e-25	N/A	N/A
structural_annotation	UHGV-1306094_5	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_6	K01160	48.8	0.00000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1306094_6	phrog_140	94.6	1.2e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1306094_6	UniRef90_UPI00122CFAB3	250.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1306094_6	394503.Ccel_3302	147.0	1.20512e-43	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1306094_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1306094_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1306094_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_7	K07505	373.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1306094_7	phrog_2597	1098.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1306094_7	UniRef90_A0A2A6Z731	1408.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1306094_7	742738.HMPREF9460_01357	865.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1306094_7	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1306094_7	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1306094_7	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1306094_7	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_8	K17677	347.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1306094_8	phrog_16	275.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1306094_8	UniRef90_A0A3A6K1C0	983.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1306094_8	610130.Closa_1369	766.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1306094_8	mREase_IV_00005	142.5	3.59994e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1306094_8	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1306094_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1306094_8	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1306094_8	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1306094_9	phrog_2698	194.6	0	N/A	unknown function
UniRef90	UHGV-1306094_9	UniRef90_A0A291T9B6	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-1306094_9	394503.Ccel_3308	132.0	4.94e-37	N/A	N/A
structural_annotation	UHGV-1306094_9	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1306094_10	phrog_124	226.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1306094_10	UniRef90_UPI00122C2B12	574.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1306094_10	645991.Sgly_0321	375.0	0	AAA domain	N/A
Pfam	UHGV-1306094_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1306094_10	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_11	K03546	58.1	1.2e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1306094_11	phrog_1499	468.9	0	N/A	unknown function
UniRef90	UHGV-1306094_11	UniRef90_A0A3A6KBP8	734.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1306094_11	1235798.C817_04766	504.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1306094_11	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1306094_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1306094_11	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1306094_12	665956.HMPREF1032_03597	197.0	0	DNA binding	N/A
COG	UHGV-1306094_12	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1306094_13	UniRef90_UPI001D0E65C2	163.0	0	N/A	N/A
structural_annotation	UHGV-1306094_13	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1306094_17	UniRef90_A0A2A7BGV7	77.8	3.33e-17	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1306094_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1306094_17	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1306094_19	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1306094_21	K22300	45.8	0.0000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1306094_21	phrog_2967	46.6	0.00000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-1306094_21	UniRef90_E2ZIF0	188.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1306094_21	748224.HMPREF9436_01444	188.0	0	N/A	N/A
Pfam	UHGV-1306094_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1306094_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1306094_21	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1306094_23	748224.HMPREF9436_01443	588.0	0	vancomycin resistance protein	N/A
COG	UHGV-1306094_23	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-1306094_24	K14059	155.5	0	int; integrase	N/A
PHROG	UHGV-1306094_24	phrog_1	139.2	3.69999e-41	integrase	integration and excision
UniRef90	UHGV-1306094_24	UniRef90_A0A2A7AII9	673.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1306094_24	748224.HMPREF9436_03382	322.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1306094_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1306094_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1306094_24	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A