UHGV-1313769 (vOTU-155177)

Viral Genome: UHGV-1313769

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1313769
vOTU ID	vOTU-155177
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS415880\|NODE_109_length_24623_cov_9.998901
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.86 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.13
Jumbo phage	No

Genome content
Genome length (bp)	24,623
GC content	47.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	88%
Average CDS length (bps)	494.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1313769_1	K03733	228.4	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1313769_1	phrog_1	164.4	0	integrase	integration and excision
UniRef90	UHGV-1313769_1	UniRef90_A0A416L1N4	574.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1313769_1	610130.Closa_3343	496.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1313769_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1313769_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1313769_1	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_3	phrog_12931	78.5	8.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1313769_3	1298920.KI911353_gene2672	80.9	1.42e-17	N/A	N/A
UniRef90	UHGV-1313769_4	UniRef90_A0A3R6QNF9	69.7	0.00000000000000329	ASCH domain-containing protein	N/A
NCBIFam	UHGV-1313769_4	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-1313769_6	phrog_4105	99.4	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1313769_6	657322.FPR_27220	103.0	2.33e-27	N/A	N/A
PHROG	UHGV-1313769_7	phrog_1129	78.3	6.5e-23	holin	lysis
UniRef90	UHGV-1313769_7	UniRef90_A0A3R6U6I1	161.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1313769_7	1321782.HMPREF1986_00360	103.0	4.76e-28	N/A	N/A
Pfam	UHGV-1313769_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1313769_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_8	phrog_1048	167.5	0	N/A	unknown function
UniRef90	UHGV-1313769_8	UniRef90_A0A416L221	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-1313769_8	457412.RSAG_01107	255.0	0	N/A	N/A
Pfam	UHGV-1313769_8	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1313769_8	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1313769_8	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_9	phrog_918	129.3	9.3e-39	N/A	unknown function
UniRef90	UHGV-1313769_9	UniRef90_UPI00115A7D93	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-1313769_9	469618.FVAG_01307	140.0	1.53022e-42	N/A	N/A
Pfam	UHGV-1313769_9	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1313769_9	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-1313769_10	K17733	151.0	7.00649e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1313769_10	phrog_2649	134.2	1.3e-39	endolysin	lysis
UniRef90	UHGV-1313769_10	UniRef90_A0A416FC87	422.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1313769_10	397290.C810_03258	214.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1313769_10	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-1313769_10	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-1313769_10	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1313769_10	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
KOfam	UHGV-1313769_11	K14059	128.5	8.9e-38	int; integrase	N/A
PHROG	UHGV-1313769_11	phrog_1	148.8	5.04467e-44	integrase	integration and excision
UniRef90	UHGV-1313769_11	UniRef90_G5FHB3	559.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1313769_11	585394.RHOM_14030	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1313769_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1313769_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1313769_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1313769_12	UniRef90_A0A3R6Q1U3	419.0	0	NINE protein	N/A
eggNOG-mapper	UHGV-1313769_12	742740.HMPREF9474_03106	149.0	1.82029e-42	TM2 domain	N/A
Pfam	UHGV-1313769_12	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1313769_12	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_13	phrog_87	92.3	3.8e-27	metallo-protease	other
UniRef90	UHGV-1313769_13	UniRef90_A0A3R6LPT6	276.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1313769_13	411460.RUMTOR_02055	181.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1313769_13	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1313769_13	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1313769_13	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1313769_14	K22299	46.6	0.00000000000081	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1313769_14	phrog_8	61.8	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1313769_14	UniRef90_A0A417C2R0	246.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1313769_14	411460.RUMTOR_02056	146.0	3.44719e-43	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1313769_14	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1313769_14	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1313769_14	PF12844,MF_00584,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_15	phrog_8	49.5	0.00000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1313769_15	UniRef90_A0A417C403	125.0	8e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1313769_15	1201292.DR75_1541	64.7	0.000000000000273	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1313769_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1313769_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1313769_15	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_16	phrog_31760	66.1	3.5e-19	N/A	unknown function
PHROG	UHGV-1313769_18	phrog_6058	44.1	0.0000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1313769_18	1462527.CCDM010000010_gene482	48.5	0.00000117	N/A	N/A
Pfam	UHGV-1313769_18	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1313769_22	PF09871,MF_00085,TIGR00739,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_23	phrog_434	172.9	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1313769_23	UniRef90_A0A417WEV5	404.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1313769_23	742740.HMPREF9474_03486	313.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1313769_23	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1313769_23	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1313769_23	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1313769_23	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_24	phrog_674	149.2	2.38221e-44	N/A	unknown function
UniRef90	UHGV-1313769_24	UniRef90_UPI001177B8E6	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-1313769_24	742740.HMPREF9474_03487	325.0	0	N/A	N/A
Pfam	UHGV-1313769_24	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1313769_24	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_25	phrog_2760	216.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1313769_25	UniRef90_A0A373CW44	353.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1313769_25	536233.CLO_0507	212.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1313769_25	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1313769_25	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1313769_25	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1313769_25	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_26	phrog_997	91.8	7.2e-27	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1313769_26	UniRef90_A0A417AC21	82.0	3.17e-17	Replication terminator protein	N/A
eggNOG-mapper	UHGV-1313769_26	358681.BBR47_35700	73.9	0.00000000000000574	N/A	N/A
PHROG	UHGV-1313769_27	phrog_1029	267.5	0	N/A	unknown function
UniRef90	UHGV-1313769_27	UniRef90_E7GRE5	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-1313769_27	742740.HMPREF9474_03490	303.0	0	N/A	N/A
structural_annotation	UHGV-1313769_27	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_28	phrog_15768	171.4	0	N/A	unknown function
UniRef90	UHGV-1313769_28	UniRef90_A0A6N7WLG6	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-1313769_28	642492.Clole_0798	88.2	3.98e-18	N/A	N/A
AcrCatalog	UHGV-1313769_28	cluster_38323	161.0	0	NA	N/A
Pfam	UHGV-1313769_28	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1313769_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1313769_28	PF19808	N/A	N/A	N/A	N/A
UniRef90	UHGV-1313769_29	UniRef90_A0A3R6K7W7	179.0	0	Sigma70_r4_2 domain-containing protein	N/A
Pfam	UHGV-1313769_29	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-1313769_29	PF13384,PF17516,NF001074,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_30	phrog_15077	178.7	0	N/A	unknown function
UniRef90	UHGV-1313769_30	UniRef90_A0A1M6RQ18	194.0	0	RNA polymerase, alpha chain C terminal domain	N/A
eggNOG-mapper	UHGV-1313769_30	742740.HMPREF9474_03494	285.0	0	N/A	N/A
structural_annotation	UHGV-1313769_30	NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-1313769_31	UniRef90_A0A3R6TY20	107.0	7.34e-28	N/A	N/A
eggNOG-mapper	UHGV-1313769_31	411462.DORLON_00804	73.2	0.00000000000000371	N/A	N/A
Pfam	UHGV-1313769_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1313769_31	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_32	phrog_21101	60.1	7.8e-18	N/A	unknown function
UniRef90	UHGV-1313769_32	UniRef90_A0A417EL79	138.0	4.19002e-41	N/A	N/A
eggNOG-mapper	UHGV-1313769_32	1163671.JAGI01000003_gene537	105.0	7.58e-28	N/A	N/A
Pfam	UHGV-1313769_32	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-1313769_32	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1313769_32	PF07866,NF038082,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_34	phrog_8538	80.2	2.3e-23	N/A	unknown function
UniRef90	UHGV-1313769_34	UniRef90_A0A518V877	60.5	0.0000000043	4Fe-4S ferredoxin-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1313769_34	1196322.A370_02189	68.6	0.00000000000107	N/A	N/A
PHROG	UHGV-1313769_36	phrog_6568	64.5	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1313769_36	742740.HMPREF9474_02283	52.8	0.0000000172	N/A	N/A
PHROG	UHGV-1313769_37	phrog_25231	53.2	0.0000000000000038	N/A	unknown function
structural_annotation	UHGV-1313769_37	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_38	phrog_36	50.6	0.000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-1313769_38	UniRef90_A0A3R6X9U4	214.0	0	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-1313769_38	411902.CLOBOL_05672	159.0	0	N/A	N/A
KOfam	UHGV-1313769_39	K07474	129.4	4.9e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1313769_39	phrog_51	147.1	9.52883e-44	terminase small subunit	head and packaging
UniRef90	UHGV-1313769_39	UniRef90_A0A416L200	298.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1313769_39	1298920.KI911353_gene4857	211.0	0	Terminase small subunit	N/A
Pfam	UHGV-1313769_39	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1313769_39	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1313769_39	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1313769_40	K06909	94.5	1.6e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1313769_40	phrog_2	76.7	5.1e-22	terminase large subunit	head and packaging
UniRef90	UHGV-1313769_40	UniRef90_A0A3R6QNE9	938.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1313769_40	1304866.K413DRAFT_0811	790.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1313769_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1313769_40	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_41	phrog_533	289.8	0	portal protein	head and packaging
UniRef90	UHGV-1313769_41	UniRef90_A0A3R6U7L6	998.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1313769_41	742740.HMPREF9474_03501	760.0	0	N/A	N/A
structural_annotation	UHGV-1313769_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1313769_42	phrog_25639	125.5	1.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-1313769_42	742740.HMPREF9474_03502	101.0	1.87e-27	N/A	N/A
PHROG	UHGV-1313769_44	phrog_581	45.2	0.0000000000015	minor head protein	head and packaging
eggNOG-mapper	UHGV-1313769_44	742740.HMPREF9474_03503	125.0	1.91e-32	Phage minor capsid protein 2	N/A
COG	UHGV-1313769_44	COG2369	N/A	N/A	N/A	N/A