UHGV-1316314 (vOTU-002679)

Viral Genome: UHGV-1316314

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1316314
vOTU ID	vOTU-002679
Representative Genome?	Yes
Source	GVD
Original genome ID	Han_2018_ERR1398149_NODE_156_length_42572_cov_42.446927
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.27
Jumbo phage	No

Genome content
Genome length (bp)	42,517
GC content	54.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	91%
Average CDS length (bps)	495.27
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1316314_2	phrog_9534	48.4	0.00000000000016	head protein	head and packaging
eggNOG-mapper	UHGV-1316314_2	748224.HMPREF9436_00405	127.0	2.32e-30	domain, Protein	N/A
COG	UHGV-1316314_2	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_3	phrog_3558	205.8	0	tail protein	tail
eggNOG-mapper	UHGV-1316314_3	610130.Closa_0754	67.8	0.00000000519	N/A	N/A
Pfam	UHGV-1316314_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1316314_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1316314_3	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1316314_4	UniRef90_A0A417QGC1	117.0	2.24e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-1316314_4	411490.ANACAC_00709	103.0	3.89e-24	phage tail	N/A
COG	UHGV-1316314_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1316314_4	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_5	phrog_28775	119.4	2.9e-35	tail length tape measure protein	tail
UniRef90	UHGV-1316314_5	UniRef90_A0A6N7TLD3	1387.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1316314_5	1492737.FEM08_12070	137.0	6.45e-31	tape measure	N/A
Pfam	UHGV-1316314_5	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1316314_5	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1316314_5	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1316314_5	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_8	phrog_885	61.4	1.2e-17	major tail protein	tail
eggNOG-mapper	UHGV-1316314_8	1111121.HMPREF1247_0789	117.0	1.62e-30	N/A	N/A
structural_annotation	UHGV-1316314_8	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_9	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_10	phrog_17977	40.4	0.000000000043	N/A	unknown function
UniRef90	UHGV-1316314_10	UniRef90_A0A844DHJ8	122.0	9.92e-34	Phage head closure protein	N/A
structural_annotation	UHGV-1316314_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_12	phrog_544	139.4	2.50006e-41	major head protein	head and packaging
UniRef90	UHGV-1316314_12	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_12	476272.RUMHYD_01776	319.0	0	N/A	N/A
structural_annotation	UHGV-1316314_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_14	phrog_478	125.6	2.3e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1316314_14	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_14	1111121.HMPREF1247_0834	94.0	6.35e-23	N/A	N/A
PHROG	UHGV-1316314_16	phrog_5	49.6	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-1316314_16	UniRef90_A0A6N7TNP6	285.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1316314_16	1123309.AQYB01000018_gene814	90.1	4.48e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1316314_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1316314_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1316314_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_18	phrog_2468	82.2	4.8e-24	head morphogenesis	head and packaging
UniRef90	UHGV-1316314_18	UniRef90_A0A6N7TLR7	610.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_18	1504822.CCNO01000013_gene286	118.0	1.33e-26	cell adhesion	N/A
Pfam	UHGV-1316314_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1316314_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_18	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_21	phrog_64	121.5	3.3e-36	portal protein	head and packaging
UniRef90	UHGV-1316314_21	UniRef90_A0A6N7TNT3	890.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1316314_21	642492.Clole_2764	80.5	0.000000000000236	phage portal protein, SPP1	N/A
Pfam	UHGV-1316314_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1316314_21	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_22	K06909	141.2	1.10002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1316314_22	phrog_10250	171.3	0	N/A	unknown function
UniRef90	UHGV-1316314_22	UniRef90_A0A844D8I4	848.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1316314_22	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1316314_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1316314_22	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1316314_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1316314_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1316314_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1316314_23	UniRef90_UPI0018CC2891	112.0	1.34e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_23	1235790.C805_00037	108.0	4.17e-28	N/A	N/A
structural_annotation	UHGV-1316314_23	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_24	phrog_36	66.3	5.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1316314_24	UniRef90_A0A6N7TNN9	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-1316314_24	748224.HMPREF9436_01463	78.6	1.6e-16	N/A	N/A
Pfam	UHGV-1316314_24	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1316314_24	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_26	K01160	58.3	2.6e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1316314_26	phrog_34	59.6	7.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1316314_26	UniRef90_A0A6N7TND6	232.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1316314_26	875454.BAEW01000002_gene491	146.0	1.03696e-43	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1316314_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1316314_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1316314_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_27	phrog_3136	119.7	1.5e-35	N/A	unknown function
UniRef90	UHGV-1316314_27	UniRef90_A0A6N7TMC2	417.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_27	1235792.C808_00630	75.1	0.0000000000000659	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1316314_27	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1316314_27	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1316314_27	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_31	phrog_757	226.1	0	DNA methyltransferase	other
UniRef90	UHGV-1316314_31	UniRef90_A0A3E2U1Y9	224.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1316314_31	748224.HMPREF9436_03069	232.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1316314_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1316314_31	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1316314_33	UniRef90_A0A417H740	111.0	7.02e-28	N/A	N/A
structural_annotation	UHGV-1316314_34	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_35	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_36	K02086	45.7	0.000000000001	dnaD; DNA replication protein	N/A
PHROG	UHGV-1316314_36	phrog_186	44.9	0.0000000000024	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1316314_36	UniRef90_A0A564U6B4	132.0	3.07e-39	Replication initiation and membrane attachment	N/A
eggNOG-mapper	UHGV-1316314_36	718252.FP2_01000	66.2	0.00000000000512	N/A	N/A
Pfam	UHGV-1316314_36	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1316314_36	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1316314_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1316314_37	phrog_15768	43.4	0.0000000000063	N/A	unknown function
eggNOG-mapper	UHGV-1316314_37	748224.HMPREF9436_03357	65.9	0.000000000166	N/A	N/A
Pfam	UHGV-1316314_37	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-1316314_38	K03111	129.7	3.7e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1316314_38	phrog_44	137.4	9.99995e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1316314_38	UniRef90_A0A329TTF5	191.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1316314_38	411483.FAEPRAA2165_01975	193.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1316314_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1316314_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1316314_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1316314_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1316314_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_39	phrog_561	107.0	1.9e-31	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1316314_39	UniRef90_UPI0011C8A287	145.0	3.5e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-1316314_39	33035.JPJF01000071_gene4462	148.0	1.10002e-41	N/A	N/A
structural_annotation	UHGV-1316314_39	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_41	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_43	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_44	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_45	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1316314_47	1121865.OMW_01950	68.9	0.0000000000000215	N/A	N/A
structural_annotation	UHGV-1316314_47	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1316314_48	760568.Desku_0919	100.0	2.45e-23	N/A	N/A
structural_annotation	UHGV-1316314_48	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_49	K07741	143.5	3.00018e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-1316314_49	phrog_63	119.7	3.1e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1316314_49	UniRef90_A0A6N7TLD1	343.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-1316314_49	1230342.CTM_16892	206.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1316314_49	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1316314_49	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1316314_49	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1316314_49	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_52	PF16857,NF001981	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_54	K22300	50.0	0.000000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1316314_54	phrog_2967	46.7	0.00000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-1316314_54	UniRef90_A0A844DFR0	169.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_54	748224.HMPREF9436_01444	140.0	5.38995e-41	N/A	N/A
Pfam	UHGV-1316314_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1316314_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1316314_54	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_57	phrog_888	110.9	1.5e-33	N/A	unknown function
UniRef90	UHGV-1316314_57	UniRef90_A0A6N7TMA2	375.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1316314_57	999411.HMPREF1092_03312	85.5	3.38e-17	Short C-terminal domain	N/A
Pfam	UHGV-1316314_57	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1316314_57	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1316314_57	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-1316314_60	UniRef90_A0A6N7TLT0	345.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1316314_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1316314_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1316314_60	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1316314_61	K14059	143.2	3.20057e-42	int; integrase	N/A
PHROG	UHGV-1316314_61	phrog_1	166.5	0	integrase	integration and excision
UniRef90	UHGV-1316314_61	UniRef90_A0A6N7TNQ4	739.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1316314_61	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1316314_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1316314_61	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1316314_61	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1316314_63	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_64	phrog_20016	202.8	0	N/A	unknown function
UniRef90	UHGV-1316314_64	UniRef90_A0A285PT46	211.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1316314_64	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-1316314_64	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_66	phrog_16490	197.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1316314_66	397290.C810_01328	128.0	1.86e-32	N/A	N/A
PHROG	UHGV-1316314_67	phrog_22984	71.0	1.6e-20	N/A	unknown function
PHROG	UHGV-1316314_68	phrog_21718	88.8	6.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1316314_68	397290.C810_05210	82.8	7.4e-18	N/A	N/A
PHROG	UHGV-1316314_69	phrog_3754	97.6	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1316314_69	1235790.C805_00054	109.0	4.45e-29	N/A	N/A
PHROG	UHGV-1316314_70	phrog_5765	60.3	2.2e-17	N/A	unknown function
UniRef90	UHGV-1316314_70	UniRef90_UPI001D0EF465	67.4	0.000000000000077	BC1881 family protein	N/A
eggNOG-mapper	UHGV-1316314_70	1095750.HMPREF9970_1008	57.4	0.0000000000849	N/A	N/A
NCBIFam	UHGV-1316314_70	NF033495.1	N/A	N/A	BC1881 family protein	N/A
KOfam	UHGV-1316314_73	K24213	59.4	4.2e-17	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1316314_73	phrog_366	61.0	2.9e-17	tail fiber protein	tail
UniRef90	UHGV-1316314_73	UniRef90_UPI0018835F0C	627.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1316314_73	411483.FAEPRAA2165_00757	174.0	0	N/A	N/A
Pfam	UHGV-1316314_73	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1316314_73	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_74	phrog_15303	112.5	2.3e-33	N/A	unknown function
Pfam	UHGV-1316314_74	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1316314_76	K07273	168.1	0	acm; lysozyme	N/A
PHROG	UHGV-1316314_76	phrog_291	115.6	5.2e-34	endolysin	lysis
UniRef90	UHGV-1316314_76	UniRef90_A0A564U0D3	422.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1316314_76	718252.FP2_04890	257.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1316314_76	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1316314_76	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1316314_76	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1316314_77	phrog_1382	46.1	0.00000000000031	N/A	unknown function