UHGV-1319100 (vOTU-024582)

Viral Genome: UHGV-1319100

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1319100
vOTU ID	vOTU-024582
Representative Genome?	Yes
Source	GVD
Original genome ID	Ly_CA14_ion_torrent_NODE_15_length_27772_cov_14.365083
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.92 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.84
Jumbo phage	No

Genome content
Genome length (bp)	27,772
GC content	51.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	96%
Average CDS length (bps)	521.88
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1319100_2	K00558	151.1	1.4013e-45	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1319100_2	phrog_363	233.7	0	DNA methyltransferase	other
UniRef90	UHGV-1319100_2	UniRef90_G4KRB8	336.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1319100_2	693746.OBV_01900	336.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1319100_2	MTase_II_00058	123.3	2.9e-36	Type II methyltransferase	RM
Pfam	UHGV-1319100_2	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1319100_2	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1319100_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1319100_2	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1319100_3	1232449.BAHV02000016_gene1829	115.0	5.25e-31	N/A	N/A
PHROG	UHGV-1319100_4	phrog_7566	74.7	8.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1319100_4	693746.OBV_24070	73.2	0.00000000000000743	N/A	N/A
KOfam	UHGV-1319100_5	K01160	52.4	0.000000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1319100_5	phrog_140	117.6	9.5e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319100_5	UniRef90_A0A7C6PBU4	131.0	1.23e-36	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1319100_5	1123263.AUKY01000072_gene2102	121.0	2.28e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1319100_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1319100_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1319100_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1319100_17	K03091	86.8	3.9e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-1319100_17	UniRef90_A0A316LD95	62.4	0.00000000544	Sigma70_r2 domain-containing protein	N/A
Pfam	UHGV-1319100_17	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-1319100_17	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1319100_17	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1319100_17	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1319100_17	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1319100_18	K01520	165.3	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1319100_18	phrog_135	133.5	1.1e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319100_18	UniRef90_UPI001873736C	196.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1319100_18	1282887.AUJG01000016_gene1113	159.0	0	N/A	N/A
Pfam	UHGV-1319100_18	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1319100_18	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1319100_18	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1319100_18	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1319100_20	1297617.JPJD01000059_gene2640	108.0	1.06e-28	N/A	N/A
structural_annotation	UHGV-1319100_20	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1319100_21	K03497	62.1	1.2e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1319100_21	phrog_940	361.0	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319100_21	UniRef90_UPI00190E9E57	414.0	0	N/A	N/A
eggNOG-mapper	UHGV-1319100_21	936154.STP_1604	372.0	0	N/A	N/A
PADLOC	UHGV-1319100_21	MTase_II_00015	84.4	2e-24	Type II methyltransferase	RM
Pfam	UHGV-1319100_21	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1319100_21	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1319100_21	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1319100_21	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_22	phrog_5234	48.8	0.0000000000001	N/A	unknown function
UniRef90	UHGV-1319100_22	UniRef90_G9WTK7	158.0	5.60519e-45	Gln_amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1319100_22	78345.BMERY_0883	58.5	0.000000285	N/A	N/A
Pfam	UHGV-1319100_22	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
structural_annotation	UHGV-1319100_22	PF15644,NF011786	N/A	N/A	N/A	N/A
KOfam	UHGV-1319100_24	K06909	281.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1319100_24	phrog_3717	155.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1319100_24	UniRef90_A0A416S378	539.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1319100_24	33035.JPJF01000106_gene3136	374.0	0	Terminase small subunit	N/A
Pfam	UHGV-1319100_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1319100_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1319100_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-1319100_25	K06909	46.1	0.00000000000082	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1319100_25	phrog_18557	75.1	7e-22	terminase large subunit	head and packaging
UniRef90	UHGV-1319100_25	UniRef90_D3ANA1	78.6	1.44e-17	Terminase_3C domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1319100_25	545697.HMPREF0216_02844	79.7	4.05e-19	DNA packaging	N/A
COG	UHGV-1319100_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1319100_26	phrog_533	83.9	1.5e-24	portal protein	head and packaging
UniRef90	UHGV-1319100_26	UniRef90_A0A847YRN2	84.3	1.55e-17	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1319100_26	1226322.HMPREF1545_00044	157.0	1.31722e-43	N/A	N/A
Pfam	UHGV-1319100_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
PHROG	UHGV-1319100_27	phrog_533	253.4	0	portal protein	head and packaging
UniRef90	UHGV-1319100_27	UniRef90_A0A1C5N775	375.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1319100_27	1226322.HMPREF1545_00044	342.0	0	N/A	N/A
Pfam	UHGV-1319100_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1319100_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_28	phrog_1233	77.6	1.9e-22	N/A	unknown function
UniRef90	UHGV-1319100_28	UniRef90_UPI001C39EFB9	101.0	1.64e-25	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1319100_28	357809.Cphy_2967	115.0	1.1e-31	N/A	N/A
PHROG	UHGV-1319100_29	phrog_581	264.3	0	minor head protein	head and packaging
UniRef90	UHGV-1319100_29	UniRef90_A0A417HAG8	335.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1319100_29	545697.HMPREF0216_02846	248.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1319100_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1319100_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1319100_29	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_30	phrog_2303	58.5	7.2e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-1319100_30	UniRef90_A0A4D6A3V9	65.9	0.000000000482	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-1319100_30	1226322.HMPREF1545_00049	81.6	5.67e-17	N/A	N/A
AcrCatalog	UHGV-1319100_30	cluster_74817	56.2	0.00000000000468	NA	N/A
structural_annotation	UHGV-1319100_30	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_31	phrog_544	122.3	4.5e-36	major head protein	head and packaging
UniRef90	UHGV-1319100_31	UniRef90_A0A1C6B5R0	384.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1319100_31	476272.RUMHYD_01776	323.0	0	N/A	N/A
structural_annotation	UHGV-1319100_31	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-1319100_32	UniRef90_K1RKS6	87.8	5.64e-20	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1319100_32	1232453.BAIF02000011_gene3359	101.0	9.19e-24	N/A	N/A
Pfam	UHGV-1319100_32	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1319100_32	PF18316	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_33	phrog_541	105.7	3.1e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-1319100_33	1120998.AUFC01000030_gene2237	71.2	0.0000000000000309	N/A	N/A
PHROG	UHGV-1319100_34	phrog_3366	95.5	4.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-1319100_34	1226322.HMPREF1545_00053	107.0	1.08e-27	N/A	N/A
structural_annotation	UHGV-1319100_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_35	phrog_556	56.8	3.7e-16	minor head protein	head and packaging
UniRef90	UHGV-1319100_35	UniRef90_A0A2U1BEM0	99.8	3.62e-24	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1319100_35	1226322.HMPREF1545_00054	95.1	4.14e-23	Minor capsid protein	N/A
Pfam	UHGV-1319100_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1319100_35	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_36	phrog_3266	52.4	0.0000000000000085	tail completion	connector
eggNOG-mapper	UHGV-1319100_36	1232443.BAIA02000078_gene24	112.0	3.89e-30	N/A	N/A
structural_annotation	UHGV-1319100_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_37	phrog_3099	70.9	2.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1319100_37	1235797.C816_04186	208.0	0	N/A	N/A
structural_annotation	UHGV-1319100_37	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_38	phrog_11299	58.3	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1319100_38	693746.OBV_18160	127.0	9.14e-36	N/A	N/A
structural_annotation	UHGV-1319100_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_39	phrog_706	122.7	2.8e-36	N/A	unknown function
UniRef90	UHGV-1319100_39	UniRef90_A0A2U1BEN4	197.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1319100_39	693746.OBV_18170	173.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1319100_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1319100_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_41	phrog_17020	97.3	2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1319100_41	1235797.C816_04182	111.0	8.5e-23	SLT domain	N/A
COG	UHGV-1319100_41	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_42	phrog_1194	53.4	0.0000000000000048	N/A	unknown function
eggNOG-mapper	UHGV-1319100_42	1219626.HMPREF1639_07230	60.5	0.000000000369	N/A	N/A
structural_annotation	UHGV-1319100_42	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_43	phrog_32744	226.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1319100_43	411902.CLOBOL_00124	109.0	8.5e-22	N/A	N/A
structural_annotation	UHGV-1319100_43	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1319100_44	1408422.JHYF01000026_gene3527	56.6	0.000000507	nuclear chromosome segregation	N/A
COG	UHGV-1319100_44	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1319100_45	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_48	phrog_30034	114.6	1.1e-33	N/A	unknown function
UniRef90	UHGV-1319100_48	UniRef90_A0A2Y9CAD1	154.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1319100_48	411460.RUMTOR_02099	130.0	6.92e-36	N/A	N/A
Pfam	UHGV-1319100_48	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1319100_48	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_50	phrog_918	107.8	4.6e-32	N/A	unknown function
UniRef90	UHGV-1319100_50	UniRef90_UPI0013775FB5	115.0	6.21e-32	N/A	N/A
eggNOG-mapper	UHGV-1319100_50	1504823.CCMM01000008_gene1021	105.0	7.32e-29	N/A	N/A
Pfam	UHGV-1319100_50	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1319100_50	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1319100_51	phrog_14030	166.2	0	N/A	unknown function
UniRef90	UHGV-1319100_51	UniRef90_A0A316NTC6	213.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1319100_51	641107.CDLVIII_3774	191.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-1319100_51	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1319100_51	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1319100_51	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1319100_51	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A