UHGV-1319956 (vOTU-064606)

Viral Genome: UHGV-1319956

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1319956
vOTU ID	vOTU-064606
Representative Genome?	Yes
Source	GVD
Original genome ID	Chehoud_control_2_NODE_8_length_33848_cov_101.073092
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.12 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.3
Jumbo phage	No

Genome content
Genome length (bp)	33,848
GC content	46.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	93%
Average CDS length (bps)	585.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1319956_1	phrog_36	60.7	3.3e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1319956_1	PF07374,TIGR01637	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1319956_4	PF19157	N/A	N/A	N/A	N/A
UniRef90	UHGV-1319956_5	UniRef90_A0A1I3J1T2	165.0	0	N/A	N/A
Pfam	UHGV-1319956_5	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1319956_5	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1319956_6	665956.HMPREF1032_03084	64.7	0.00000000000075	N/A	N/A
structural_annotation	UHGV-1319956_7	PF06257,NF011232	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_8	phrog_38832	77.8	7.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1319956_8	665956.HMPREF1032_03087	160.0	0	N/A	N/A
PHROG	UHGV-1319956_10	phrog_757	175.5	0	DNA methyltransferase	other
UniRef90	UHGV-1319956_10	UniRef90_A0A371AZL8	339.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1319956_10	748224.HMPREF9436_03069	292.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1319956_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1319956_10	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_12	phrog_599	47.8	0.00000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1319956_12	UniRef90_U2DJA0	50.1	0.0000064	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1319956_12	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1319956_12	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1319956_13	UniRef90_A0A8D9PDK2	53.9	0.000000246	Zinc-ribbon containing domain	N/A
KOfam	UHGV-1319956_14	K00571	108.4	8.8e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1319956_14	phrog_67	99.5	1.8e-30	DNA methyltransferase	other
UniRef90	UHGV-1319956_14	UniRef90_A0A3A6E967	525.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1319956_14	910314.HMPREF9220_0636	375.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1319956_14	MTase_II_00157	82.4	2.6e-25	Type II methyltransferase	RM
Pfam	UHGV-1319956_14	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1319956_14	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1319956_14	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_16	phrog_244	82.4	7.4e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1319956_16	33035.JPJF01000122_gene2460	173.0	0	N/A	N/A
structural_annotation	UHGV-1319956_16	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1319956_18	K02314	266.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1319956_18	phrog_19	264.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319956_18	UniRef90_A0A0W7TNB4	821.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1319956_18	665956.HMPREF1032_02618	685.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1319956_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1319956_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1319956_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1319956_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_19	phrog_2514	84.4	1.5e-24	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1319956_19	665956.HMPREF1032_02617	223.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-1319956_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1319956_19	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1319956_20	K03111	135.9	4.9e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1319956_20	phrog_44	146.4	1.59748e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319956_20	UniRef90_A0A0W7TNC8	282.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1319956_20	665956.HMPREF1032_00430	197.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1319956_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1319956_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1319956_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1319956_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1319956_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_21	phrog_7370	65.6	6.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319956_21	UniRef90_UPI001967FBF8	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1319956_21	459495.SPLC1_S010770	47.8	0.00000756	endonuclease activity	N/A
Pfam	UHGV-1319956_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1319956_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1319956_22	phrog_72	50.2	0.000000000000049	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1319956_22	1118057.CAGX01000020_gene1649	58.9	0.0000000259	N/A	N/A
structural_annotation	UHGV-1319956_22	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-1319956_23	UniRef90_B0PAM4	143.0	9.97e-40	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1319956_23	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_24	phrog_155	63.8	2.8e-18	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1319956_24	UniRef90_UPI001966DA32	405.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1319956_24	1033743.CAES01000078_gene3732	64.3	0.000000000607	ERF superfamily	N/A
Pfam	UHGV-1319956_24	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1319956_24	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_27	phrog_30822	62.7	8e-18	N/A	unknown function
UniRef90	UHGV-1319956_27	UniRef90_UPI00164AA766	103.0	1.79e-26	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1319956_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-1319956_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1319956_27	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1319956_28	cluster_35670	131.0	1.26117e-43	NA	N/A
structural_annotation	UHGV-1319956_28	NF042413	N/A	N/A	N/A	N/A
Pfam	UHGV-1319956_30	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-1319956_30	PF13463,MF_01909,NF033788,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-1319956_32	UniRef90_UPI001CD6A7E5	75.1	1.78e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1319956_32	718252.FP2_06860	92.4	4.12e-24	N/A	N/A
Pfam	UHGV-1319956_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1319956_32	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1319956_33	K01356	156.2	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1319956_33	phrog_4	121.3	1.1e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-1319956_33	UniRef90_A0A564U5Z2	236.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-1319956_33	718252.FP2_06870	237.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1319956_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1319956_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1319956_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1319956_33	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1319956_35	K14059	166.5	0	int; integrase	N/A
PHROG	UHGV-1319956_35	phrog_1	164.9	0	integrase	integration and excision
UniRef90	UHGV-1319956_35	UniRef90_UPI0018989279	463.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1319956_35	936580.HMPREF1516_0752	72.4	0.0000000000422	DNA integration	N/A
Pfam	UHGV-1319956_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1319956_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1319956_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_37	phrog_1129	69.6	3.5e-20	holin	lysis
UniRef90	UHGV-1319956_37	UniRef90_A0A0D8J2M2	176.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1319956_37	665956.HMPREF1032_03272	158.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1319956_37	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1319956_37	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_38	phrog_4105	95.3	4.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1319956_38	657322.FPR_27220	117.0	1e-32	N/A	N/A
KOfam	UHGV-1319956_39	K19304	101.0	1.7e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1319956_39	phrog_7767	96.1	2.5e-28	metallo-endopeptidase	other
UniRef90	UHGV-1319956_39	UniRef90_A0A3A6EBG8	461.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-1319956_39	1041147.AUFB01000010_gene1454	91.3	1.88e-18	Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-1319956_39	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1319956_39	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1319956_39	PF01551,NF040883,COG0739,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_40	phrog_16573	58.9	5.6e-17	N/A	unknown function
UniRef90	UHGV-1319956_40	UniRef90_A0A0D8IYB2	630.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1319956_40	1160721.RBI_I01572	75.1	0.00000000000251	N/A	N/A
Pfam	UHGV-1319956_40	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1319956_41	phrog_1067	392.9	0	minor head protein	head and packaging
UniRef90	UHGV-1319956_41	UniRef90_A0A0D8IVK1	821.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1319956_41	1123263.AUKY01000068_gene489	402.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1319956_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1319956_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1319956_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1319956_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_42	phrog_33	56.6	7.7e-16	distal tail protein Dit	tail
UniRef90	UHGV-1319956_42	UniRef90_A0A1C6H6D2	184.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1319956_42	1032362.F6K8S1_9CAUD	112.0	1.52e-27	Phage tail protein	N/A
structural_annotation	UHGV-1319956_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_43	phrog_1272	100.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1319956_43	UniRef90_A0A1Y4R6K5	301.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1319956_43	1140001.I571_01843	191.0	0	phage tail tape measure protein	N/A
COG	UHGV-1319956_43	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1319956_43	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_45	phrog_88	102.2	4.9e-30	major tail protein	tail
UniRef90	UHGV-1319956_45	UniRef90_G9YSC5	133.0	1.24e-35	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1319956_45	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1319956_45	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1319956_45	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_46	phrog_5	52.4	0.000000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-1319956_46	UniRef90_A0A1C6FG30	165.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1319956_46	908340.HMPREF9406_2573	122.0	3.07e-33	N/A	N/A
NCBIFam	UHGV-1319956_46	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1319956_46	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_47	phrog_78	44.8	0.0000000000027	tail terminator	connector
eggNOG-mapper	UHGV-1319956_47	1232446.BAIE02000002_gene829	101.0	1.81e-26	N/A	N/A
structural_annotation	UHGV-1319956_47	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_48	phrog_19734	54.9	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-1319956_48	UniRef90_A0A316NL63	111.0	1.44e-29	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1319956_48	1232446.BAIE02000002_gene828	55.1	0.000000041	N/A	N/A
structural_annotation	UHGV-1319956_48	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_49	phrog_2550	57.9	1.3e-16	N/A	unknown function
UniRef90	UHGV-1319956_49	UniRef90_UPI0008717716	69.3	0.000000000000208	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1319956_49	1226322.HMPREF1545_00117	70.9	0.00000000000000886	N/A	N/A
structural_annotation	UHGV-1319956_49	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_50	phrog_10	201.3	0	major head protein	head and packaging
UniRef90	UHGV-1319956_50	UniRef90_UPI000679B959	1061.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1319956_50	1226322.HMPREF1545_00116	640.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1319956_50	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1319956_50	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1319956_50	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1319956_50	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1319956_51	K06904	148.2	7.9874e-44	N/A	N/A
PHROG	UHGV-1319956_51	phrog_80	170.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1319956_51	UniRef90_A0A0D8IYC2	383.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1319956_51	1226322.HMPREF1545_00115	253.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1319956_51	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1319956_51	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1319956_51	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1319956_51	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_52	phrog_12	196.2	0	portal protein	head and packaging
UniRef90	UHGV-1319956_52	UniRef90_A0A0D8IVL0	806.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1319956_52	1226322.HMPREF1545_00114	535.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1319956_52	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1319956_52	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1319956_52	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1319956_52	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_53	phrog_9	288.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1319956_53	UniRef90_A0A0D8IV16	1196.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1319956_53	1226322.HMPREF1545_00113	899.0	0	Phage Terminase	N/A
Pfam	UHGV-1319956_53	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1319956_53	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1319956_53	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1319956_53	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1319956_54	phrog_361	67.9	1.8e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1319956_54	UniRef90_A0A1C6H6I9	197.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1319956_54	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1319956_54	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1319956_54	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A