UHGV-1326125 (vOTU-002356)

Viral Genome: UHGV-1326125

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1326125
vOTU ID	vOTU-002356
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS415881\|NODE_21_length_40586_cov_13.155190
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.23
Jumbo phage	No

Genome content
Genome length (bp)	40,531
GC content	48.64%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	533.04
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1326125_4	phrog_309	180.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-1326125_4	UniRef90_A0A6G3M4V4	226.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1326125_4	1408437.JNJN01000045_gene597	187.0	0	HNH endonuclease	N/A
Pfam	UHGV-1326125_4	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1326125_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-1326125_5	K06909	385.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1326125_5	phrog_5653	158.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1326125_5	UniRef90_A0A2U1BEH4	826.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1326125_5	33035.JPJF01000106_gene3136	464.0	0	Terminase small subunit	N/A
Pfam	UHGV-1326125_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1326125_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1326125_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1326125_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1326125_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_6	phrog_533	402.0	0	portal protein	head and packaging
UniRef90	UHGV-1326125_6	UniRef90_A0A1C5N775	947.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1326125_6	1226322.HMPREF1545_00044	756.0	0	N/A	N/A
Pfam	UHGV-1326125_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1326125_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_7	phrog_419	101.6	8e-30	N/A	unknown function
UniRef90	UHGV-1326125_7	UniRef90_A0A4U9RIR3	121.0	6.42e-34	N/A	N/A
eggNOG-mapper	UHGV-1326125_7	476272.RUMHYD_03324	135.0	3.03e-40	N/A	N/A
PHROG	UHGV-1326125_8	phrog_581	278.9	0	minor head protein	head and packaging
UniRef90	UHGV-1326125_8	UniRef90_A0A1C5N7V1	698.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1326125_8	1226322.HMPREF1545_00046	414.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1326125_8	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1326125_8	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-1326125_8	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1326125_8	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_9	phrog_2303	63.2	5.1e-18	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1326125_9	1226322.HMPREF1545_00049	241.0	0	N/A	N/A
PHROG	UHGV-1326125_10	phrog_10	173.6	0	major head protein	head and packaging
UniRef90	UHGV-1326125_10	UniRef90_U2SBS0	620.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1326125_10	1226322.HMPREF1545_00050	620.0	0	Phage capsid family	N/A
Pfam	UHGV-1326125_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1326125_10	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1326125_10	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1326125_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_11	phrog_541	107.6	7.4e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-1326125_11	1120998.AUFC01000030_gene2237	66.2	0.00000000000485	N/A	N/A
PHROG	UHGV-1326125_12	phrog_3366	98.9	4.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-1326125_12	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-1326125_12	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_13	phrog_556	64.8	7.8e-19	minor head protein	head and packaging
UniRef90	UHGV-1326125_13	UniRef90_A0A1C5N8K8	266.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1326125_13	1226322.HMPREF1545_00054	162.0	0	Minor capsid protein	N/A
Pfam	UHGV-1326125_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1326125_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_14	phrog_3266	45.9	0.00000000000083	tail completion	connector
UniRef90	UHGV-1326125_14	UniRef90_A0A2Z4QA01	105.0	9.36e-27	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1326125_14	1232443.BAIA02000078_gene24	127.0	9.98e-36	N/A	N/A
structural_annotation	UHGV-1326125_14	PF12691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1326125_15	877415.JNJQ01000019_gene1782	60.8	0.0000000539	N/A	N/A
PHROG	UHGV-1326125_16	phrog_3099	124.1	9.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1326125_16	645991.Sgly_0346	108.0	8.03e-28	N/A	N/A
structural_annotation	UHGV-1326125_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_17	phrog_11299	45.2	0.0000000000014	N/A	unknown function
UniRef90	UHGV-1326125_17	UniRef90_A0A2Z4QA03	103.0	1.07e-25	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1326125_17	1120746.CCNL01000014_gene2103	113.0	2.12e-30	N/A	N/A
structural_annotation	UHGV-1326125_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_18	phrog_706	84.8	1.1e-24	N/A	unknown function
UniRef90	UHGV-1326125_18	UniRef90_A0A1C5N876	389.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1326125_18	999411.HMPREF1092_03313	73.6	0.000000000000133	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1326125_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1326125_18	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-1326125_19	K03529	40.9	0.0000000000069	smc; chromosome segregation protein	N/A
PHROG	UHGV-1326125_19	phrog_1535	399.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1326125_19	UniRef90_A0A1C5N801	1030.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-1326125_19	673837.D2IZU8_9CAUD	173.0	1.65003e-41	peptidoglycan catabolic process	N/A
PHROG	UHGV-1326125_20	phrog_1194	73.1	3.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1326125_20	1120998.AUFC01000030_gene2246	125.0	8.09e-34	N/A	N/A
structural_annotation	UHGV-1326125_20	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_21	phrog_32744	679.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1326125_21	1120998.AUFC01000030_gene2247	228.0	0	N/A	N/A
structural_annotation	UHGV-1326125_21	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1326125_23	1297617.JPJD01000099_gene2171	108.0	1.13e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-1326125_23	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1326125_23	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_24	phrog_13589	75.6	4.19969e-42	N/A	unknown function
eggNOG-mapper	UHGV-1326125_24	411471.SUBVAR_06929	323.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1326125_24	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1326125_25	696281.Desru_1098	59.7	0.000000169	ATPase involved in DNA repair	N/A
COG	UHGV-1326125_25	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-1326125_29	phrog_937	53.9	0.000000000000002	hemolysin	other
eggNOG-mapper	UHGV-1326125_29	1226322.HMPREF1545_00067	163.0	0	N/A	N/A
PHROG	UHGV-1326125_30	phrog_13256	71.0	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1326125_30	1226322.HMPREF1545_00132	75.1	5.39e-17	N/A	N/A
eggNOG-mapper	UHGV-1326125_32	469618.FVAG_02009	88.2	2.02e-19	N/A	N/A
structural_annotation	UHGV-1326125_32	PF02474,MF_02210,NF007025,COG0456	N/A	N/A	N/A	N/A
KOfam	UHGV-1326125_34	K01447	67.4	3e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1326125_34	phrog_15001	175.9	0	endolysin	lysis
UniRef90	UHGV-1326125_34	UniRef90_A0A1C6D3S9	481.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1326125_34	1378168.N510_01539	319.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1326125_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1326125_34	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1326125_34	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1326125_36	K14059	224.1	0	int; integrase	N/A
PHROG	UHGV-1326125_36	phrog_1	214.7	0	integrase	integration and excision
UniRef90	UHGV-1326125_36	UniRef90_A0A1C5N3H1	737.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1326125_36	1321814.HMPREF9089_00905	209.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1326125_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1326125_36	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1326125_36	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_37	phrog_33872	54.0	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1326125_37	693746.OBV_19740	49.3	0.00000358	N/A	N/A
PHROG	UHGV-1326125_38	phrog_37750	88.3	9.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1326125_38	1087481.AGFX01000037_gene4346	101.0	1.32e-23	N/A	N/A
KOfam	UHGV-1326125_39	K01356	152.2	4.2039e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1326125_39	phrog_4	122.7	3.9e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1326125_39	UniRef90_A0A8J6J9S0	404.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1326125_39	411483.FAEPRAA2165_03041	160.0	0	N/A	N/A
Pfam	UHGV-1326125_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1326125_39	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1326125_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1326125_39	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_40	phrog_4583	43.8	0.0000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-1326125_40	UniRef90_A0A8J6J2B4	141.0	1.24996e-42	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1326125_40	642492.Clole_2800	68.6	0.0000000000000138	N/A	N/A
Pfam	UHGV-1326125_40	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1326125_40	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1326125_46	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_47	phrog_2872	171.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1326125_47	UniRef90_A0A8J6M3C9	430.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1326125_47	1304866.K413DRAFT_0827	247.0	0	AAA domain	N/A
Pfam	UHGV-1326125_47	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1326125_47	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_49	phrog_18107	72.9	4.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1326125_49	476272.RUMHYD_02831	192.0	0	N/A	N/A
structural_annotation	UHGV-1326125_49	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_50	phrog_3490	113.1	2.1e-33	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1326125_50	UniRef90_A0A1C5W9A3	306.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1326125_50	476272.RUMHYD_01740	169.0	0	ERCC4 domain	N/A
Pfam	UHGV-1326125_50	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1326125_50	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1326125_50	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_53	phrog_2514	93.1	2.8e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1326125_53	UniRef90_A0A174F2L9	104.0	3.82e-24	N/A	N/A
eggNOG-mapper	UHGV-1326125_53	1121947.AUHK01000002_gene919	99.8	1.34e-22	DnaD domain protein	N/A
COG	UHGV-1326125_53	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1326125_54	K17680	287.3	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1326125_54	phrog_239	284.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1326125_54	UniRef90_A0A8J6J2A5	1207.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1326125_54	397290.C810_01519	533.0	0	N/A	N/A
Pfam	UHGV-1326125_54	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1326125_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1326125_54	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_56	phrog_757	193.6	0	DNA methyltransferase	other
UniRef90	UHGV-1326125_56	UniRef90_A0A4D7ASE3	408.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1326125_56	742733.HMPREF9469_01835	278.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1326125_56	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1326125_56	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_57	phrog_599	45.9	0.0000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1326125_57	UniRef90_UPI001D034588	189.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1326125_57	742738.HMPREF9460_04054	191.0	0	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1326125_57	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1326125_57	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1326125_58	742738.HMPREF9460_04055	86.3	7.38e-21	N/A	N/A
PHROG	UHGV-1326125_59	phrog_38832	58.6	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1326125_59	665956.HMPREF1032_03087	62.0	0.000000000297	N/A	N/A
eggNOG-mapper	UHGV-1326125_64	1298920.KI911353_gene2737	117.0	4.83e-33	N/A	N/A
PHROG	UHGV-1326125_65	phrog_8684	106.0	2.2e-31	N/A	unknown function
UniRef90	UHGV-1326125_65	UniRef90_A0A810QGV2	194.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1326125_65	1226322.HMPREF1545_00036	189.0	0	YopX protein	N/A
Pfam	UHGV-1326125_65	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1326125_65	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1326125_69	phrog_8	47.9	0.00000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1326125_69	UniRef90_U2SK55	117.0	1.68e-33	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1326125_69	1226322.HMPREF1545_00039	117.0	2.81e-34	sequence-specific DNA binding	N/A
Pfam	UHGV-1326125_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1326125_69	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A