UHGV-1332387 (vOTU-079772)

Viral Genome: UHGV-1332387

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1332387
vOTU ID	vOTU-079772
Representative Genome?	Yes
Source	GVD
Original genome ID	Manrique_Person1_NODE_87_length_43390_cov_8.805031
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.68 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9696
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.72
Jumbo phage	No

Genome content
Genome length (bp)	43,390
GC content	47.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	94%
Average CDS length (bps)	743.67
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1332387_1	phrog_5070	148.0	3.50325e-44	N/A	unknown function
UniRef90	UHGV-1332387_1	UniRef90_A0A373IMM1	74.7	8.07e-16	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1332387_1	1094496.m07a_pML00300	84.3	9.5e-19	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
Pfam	UHGV-1332387_1	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1332387_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
UniRef90	UHGV-1332387_3	UniRef90_UPI0011E72628	87.0	1.98e-21	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1332387_3	663278.Ethha_1740	86.7	4.83e-22	Arc-like DNA binding domain	N/A
Pfam	UHGV-1332387_3	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-1332387_3	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332387_4	UniRef90_A0A1R2F8U8	52.8	0.0000000322	Arc family DNA-binding protein	N/A
structural_annotation	UHGV-1332387_4	PF07878,NF041793,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_6	phrog_8	43.5	0.0000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-1332387_6	UniRef90_A0A095WGA5	81.6	3.76e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1332387_6	706433.HMPREF9430_01294	81.6	9.57e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1332387_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1332387_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_7	K01356	161.2	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1332387_7	phrog_4	136.4	2.29999e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-1332387_7	UniRef90_A0A174C5F9	191.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-1332387_7	428125.CLOLEP_01832	186.0	0	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1332387_7	retron_type_VI_hth_cluster2_1	40.6	0.000000000041	N/A	Retron
Pfam	UHGV-1332387_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1332387_7	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1332387_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1332387_7	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_9	phrog_5783	299.1	0	N/A	unknown function
UniRef90	UHGV-1332387_9	UniRef90_R5R085	280.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-1332387_9	445971.ANASTE_00686	273.0	0	NYN domain	N/A
Pfam	UHGV-1332387_9	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-1332387_9	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-1332387_9	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_10	K14059	259.5	0	int; integrase	N/A
PHROG	UHGV-1332387_10	phrog_1	238.6	0	integrase	integration and excision
UniRef90	UHGV-1332387_10	UniRef90_UPI0004E13594	224.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1332387_10	1408437.JNJN01000039_gene380	224.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1332387_10	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1332387_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1332387_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1332387_10	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_11	K19304	100.4	2.6e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1332387_11	phrog_7767	73.2	1.2e-21	metallo-endopeptidase	other
eggNOG-mapper	UHGV-1332387_11	1408306.JHXX01000003_gene1166	105.0	5.42e-20	Lysin motif	N/A
Pfam	UHGV-1332387_11	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-1332387_11	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1332387_11	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
Pfam	UHGV-1332387_11	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1332387_11	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-1332387_12	1226322.HMPREF1545_00786	145.0	3.8e-36	N/A	N/A
PHROG	UHGV-1332387_13	phrog_511	196.6	0	internal virion protein	head and packaging
UniRef90	UHGV-1332387_13	UniRef90_UPI00164CB5EA	176.0	4.84849e-43	dockerin type I repeat-containing protein	N/A
eggNOG-mapper	UHGV-1332387_13	1226322.HMPREF1545_00785	285.0	0	N/A	N/A
structural_annotation	UHGV-1332387_13	PF11134,NF038015,TIGR03721,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_15	phrog_5132	53.4	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-1332387_15	1128111.HMPREF0870_01752	58.5	0.000000625	N/A	N/A
PHROG	UHGV-1332387_16	phrog_263	99.4	1.7e-29	holin	lysis
UniRef90	UHGV-1332387_16	UniRef90_A0A316PDW2	97.4	6.26e-25	Phage holin	N/A
eggNOG-mapper	UHGV-1332387_16	272623.L82103	77.8	8.63e-18	SPP1 phage holin	N/A
Pfam	UHGV-1332387_16	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-1332387_16	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1332387_16	PF04688	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332387_17	UniRef90_UPI001F485105	74.7	9.79e-16	branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1332387_17	1232453.BAIF02000013_gene3226	67.8	0.0000000000000953	N/A	N/A
KOfam	UHGV-1332387_18	K08640	86.3	4.3e-25	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1332387_18	phrog_894	81.8	8.7e-24	endolysin	lysis
UniRef90	UHGV-1332387_18	UniRef90_UPI00195C71BF	98.6	2.19e-21	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1332387_18	1121324.CLIT_8c00600	90.1	9.33e-20	Peptidase M15A	N/A
Pfam	UHGV-1332387_18	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1332387_18	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332387_18	PF08291,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332387_19	411473.RUMCAL_00420	62.4	0.0000000256	nuclear chromosome segregation	N/A
COG	UHGV-1332387_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1332387_20	phrog_38190	40.0	0.000000000063	N/A	unknown function
PHROG	UHGV-1332387_21	phrog_12105	99.7	5.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1332387_21	1226322.HMPREF1545_03850	64.3	0.000000000107	N/A	N/A
PHROG	UHGV-1332387_22	phrog_371	173.8	0	major head protein	head and packaging
UniRef90	UHGV-1332387_22	UniRef90_UPI00164C0E21	333.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1332387_22	1226322.HMPREF1545_03848	460.0	0	N/A	N/A
Pfam	UHGV-1332387_22	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1332387_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_23	phrog_24113	168.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1332387_23	1226322.HMPREF1545_03847	164.0	0	N/A	N/A
structural_annotation	UHGV-1332387_23	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_24	phrog_35275	71.5	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1332387_24	1519439.JPJG01000060_gene1888	97.8	1.18e-20	N/A	N/A
PHROG	UHGV-1332387_25	phrog_30605	53.1	0.0000000000000057	N/A	unknown function
PHROG	UHGV-1332387_26	phrog_156	273.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1332387_26	1226322.HMPREF1545_03844	575.0	0	N/A	N/A
structural_annotation	UHGV-1332387_26	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_27	K06909	211.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1332387_27	phrog_3717	212.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1332387_27	UniRef90_UPI001105ADB4	608.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1332387_27	1226322.HMPREF1545_03843	541.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1332387_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1332387_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1332387_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1332387_27	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_28	K07474	79.7	8e-23	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1332387_28	phrog_51	98.0	1.3e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1332387_28	UniRef90_A0A098CYG4	81.6	1.29e-16	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1332387_28	1033740.CAEW01000026_gene526	74.7	0.0000000000000108	Terminase small subunit	N/A
Pfam	UHGV-1332387_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1332387_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1332387_28	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_31	phrog_36	48.0	0.00000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-1332387_31	UniRef90_UPI0011DCA0B2	66.2	0.0000000000531	N/A	N/A
eggNOG-mapper	UHGV-1332387_31	580331.Thit_1400	123.0	5.25e-34	N/A	N/A
structural_annotation	UHGV-1332387_31	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_32	phrog_18716	168.7	0	N/A	unknown function
UniRef90	UHGV-1332387_32	UniRef90_R6ST14	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-1332387_32	665959.HMPREF1013_00856	146.0	9.94922e-44	N/A	N/A
Pfam	UHGV-1332387_32	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
KOfam	UHGV-1332387_34	K00560	80.4	2.2e-23	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-1332387_34	phrog_5131	76.7	3e-22	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_34	UniRef90_A0A7C6BQD6	223.0	0	Thymidylat_synt domain-containing protein	N/A
eggNOG-mapper	UHGV-1332387_34	545695.TREAZ_2832	213.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	N/A
Pfam	UHGV-1332387_34	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-1332387_34	COG0207	N/A	N/A	Thymidylate synthase	N/A
KOfam	UHGV-1332387_38	K01160	43.2	0.000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1332387_38	phrog_4632	43.6	0.00000000000023	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1332387_38	469604.HMPREF0946_01097	70.5	0.0000000000000591	N/A	N/A
structural_annotation	UHGV-1332387_38	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1332387_40	K03111	154.8	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1332387_40	phrog_44	146.5	1.4013e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_40	UniRef90_C0GI94	147.0	3.1249e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1332387_40	555088.DealDRAFT_2203	147.0	5.1848e-44	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1332387_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1332387_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1332387_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1332387_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1332387_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_41	phrog_7566	86.3	2.3e-25	N/A	unknown function
UniRef90	UHGV-1332387_41	UniRef90_A0A1V5HS54	75.1	0.00000000000000105	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1332387_41	1347392.CCEZ01000060_gene3272	52.4	0.000000176	N/A	N/A
UniRef90	UHGV-1332387_42	UniRef90_A0A1Q6M1X1	74.7	0.00000000000000404	HTH_11 domain-containing protein	N/A
Pfam	UHGV-1332387_42	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-1332387_42	PF21715,TIGR00122	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_43	phrog_72	63.6	2.9e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1332387_43	1304866.K413DRAFT_1197	166.0	0	N/A	N/A
structural_annotation	UHGV-1332387_43	PF05772,NF007281	N/A	N/A	N/A	N/A
Pfam	UHGV-1332387_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-1332387_48	K02315	195.3	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1332387_48	phrog_50	166.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_48	UniRef90_UPI001D063920	222.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1332387_48	445972.ANACOL_00153	174.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-1332387_48	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1332387_48	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
PHROG	UHGV-1332387_49	phrog_4707	73.6	8.5e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_49	UniRef90_UPI0011C364A6	77.4	0.00000000000047	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1332387_49	1321774.HMPREF9108_00412	113.0	7.31e-27	N/A	N/A
Pfam	UHGV-1332387_49	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1332387_49	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1332387_49	PF02082,MF_01819,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_50	phrog_298	57.8	1.2e-16	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_50	UniRef90_A0A843HPP6	141.0	5.22e-39	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1332387_50	1399942.U3PDT7_9CAUD	161.0	0	nuclease activity	N/A
structural_annotation	UHGV-1332387_50	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_51	phrog_6244	75.2	1.1e-21	N/A	unknown function
COG	UHGV-1332387_51	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1332387_51	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_52	phrog_155	133.6	1.4e-39	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332387_52	UniRef90_A0A4R7KTP9	150.0	3.18936e-42	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-1332387_52	1118057.CAGX01000020_gene1653	145.0	7.45995e-41	ERF superfamily	N/A
Pfam	UHGV-1332387_52	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1332387_52	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1332387_55	phrog_20532	96.7	3.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-1332387_55	445972.ANACOL_01820	92.8	5.15e-22	COG NOG06285 non supervised orthologous group	N/A
COG	UHGV-1332387_55	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A