UHGV-1332463 (vOTU-078019)

Viral Genome: UHGV-1332463

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1332463
vOTU ID	vOTU-078019
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR413725_NODE_187_length_59592_cov_32.311319
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.33 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9784
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.15
Jumbo phage	No

Genome content
Genome length (bp)	39,333
GC content	38.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	93%
Average CDS length (bps)	510.71
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1332463_3	PF11127	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332463_5	PF15513,NF007469	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_7	phrog_674	179.5	0	N/A	unknown function
UniRef90	UHGV-1332463_7	UniRef90_A0A3R6B153	434.0	0	N/A	N/A
eggNOG-mapper	UHGV-1332463_7	411460.RUMTOR_02065	163.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1332463_7	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1332463_7	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_8	phrog_155	124.0	1.2e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332463_8	UniRef90_A0A412KFC1	422.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1332463_8	357809.Cphy_2988	221.0	0	ERF superfamily	N/A
Pfam	UHGV-1332463_8	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1332463_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1332463_8	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_9	phrog_72	60.5	2.3e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1332463_9	1304866.K413DRAFT_1197	115.0	5.12e-30	N/A	N/A
PHROG	UHGV-1332463_10	phrog_7566	98.2	4.6e-29	N/A	unknown function
UniRef90	UHGV-1332463_10	UniRef90_A0A412KF94	211.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1332463_10	411902.CLOBOL_05695	54.3	0.0000000289	N/A	N/A
PHROG	UHGV-1332463_11	phrog_373	125.7	3.6e-37	anti-repressor	transcription regulation
UniRef90	UHGV-1332463_11	UniRef90_UPI001C016064	417.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_11	1304866.K413DRAFT_3008	310.0	0	Phage regulatory protein	N/A
Pfam	UHGV-1332463_11	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-1332463_11	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1332463_11	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1332463_11	PF10552,PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_12	K01160	42.8	0.000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1332463_12	phrog_1682	73.4	3.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332463_12	UniRef90_A0A6N3H631	237.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1332463_12	1399942.U3PDU0_9CAUD	90.9	1.19e-21	magnesium ion binding	N/A
structural_annotation	UHGV-1332463_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_13	phrog_2514	85.8	4.4e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332463_13	UniRef90_A0A174WT25	147.0	1.93e-39	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_13	742733.HMPREF9469_01845	186.0	0	N/A	N/A
structural_annotation	UHGV-1332463_13	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_14	K02315	151.4	7.00649e-45	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1332463_14	phrog_50	145.6	3.89561e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332463_14	UniRef90_A0A1Q6KIH9	421.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_14	742733.HMPREF9469_01844	232.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1332463_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1332463_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1332463_14	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332463_18	PF18597	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_19	phrog_8684	98.1	4.6e-29	N/A	unknown function
UniRef90	UHGV-1332463_19	UniRef90_A0A6L6XDP0	197.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_19	397290.C810_01526	76.6	4.41e-16	YopX protein	N/A
Pfam	UHGV-1332463_19	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1332463_19	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1332463_19	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332463_20	UniRef90_UPI001C02F342	76.6	0.0000000000000158	N/A	N/A
UniRef90	UHGV-1332463_21	UniRef90_A0A412KFB8	169.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1332463_21	1235790.C805_00069	76.3	2.64e-17	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1332463_21	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_22	phrog_20593	53.8	0.0000000000000024	N/A	unknown function
UniRef90	UHGV-1332463_25	UniRef90_UPI001C01D3C5	540.0	0	N/A	N/A
eggNOG-mapper	UHGV-1332463_25	622312.ROSEINA2194_04464	480.0	0	N/A	N/A
Pfam	UHGV-1332463_25	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-1332463_25	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_26	K00558	135.9	2.4e-40	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1332463_26	phrog_116	141.4	4.30058e-42	DNA methyltransferase	other
UniRef90	UHGV-1332463_26	UniRef90_A0A412KF70	691.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1332463_26	397290.C810_05213	317.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1332463_26	MTase_II_00058	147.4	2.00386e-43	Type II methyltransferase	RM
Pfam	UHGV-1332463_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1332463_26	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1332463_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1332463_26	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_28	K00558	42.5	0.0000000000058	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1332463_28	phrog_17284	61.2	3.8e-18	N/A	unknown function
UniRef90	UHGV-1332463_28	UniRef90_A0A412KFA2	441.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1332463_28	411490.ANACAC_02374	109.0	8.13e-25	N/A	N/A
PADLOC	UHGV-1332463_28	MTase_II_00147	57.5	3.3e-16	Type II methyltransferase	RM
Pfam	UHGV-1332463_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1332463_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1332463_29	phrog_1672	50.0	0.000000000000051	N/A	unknown function
KOfam	UHGV-1332463_30	K00390	72.1	4.4e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1332463_30	phrog_424	105.3	6e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1332463_30	UniRef90_A0A1Q6KUL6	582.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_30	1232452.BAIB02000007_gene1640	328.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1332463_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1332463_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1332463_30	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332463_33	UniRef90_A0A412KFA7	143.0	2.49431e-43	ABC transporter ATP-binding protein	N/A
UniRef90	UHGV-1332463_35	UniRef90_A0A3R5WW48	123.0	1.87e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1332463_35	1235799.C818_04243	102.0	7.54e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1332463_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1332463_35	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_39	phrog_1271	44.7	0.0000000000033	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332463_39	UniRef90_A0A4Q2LHE8	114.0	9.27e-29	GLYCOSYL_HYDROL_F22_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_39	742738.HMPREF9460_04058	60.8	0.0000000302	N/A	N/A
PHROG	UHGV-1332463_40	phrog_33130	92.7	1.8e-27	N/A	unknown function
UniRef90	UHGV-1332463_40	UniRef90_A0A3B9CD52	124.0	2.83e-35	S1-like domain-containing protein	N/A
structural_annotation	UHGV-1332463_40	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_42	K06909	215.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1332463_42	phrog_5653	94.6	6.3e-28	terminase large subunit	head and packaging
UniRef90	UHGV-1332463_42	UniRef90_A0A3R5WSV0	1122.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_42	33035.JPJF01000106_gene3136	324.0	0	Terminase small subunit	N/A
Pfam	UHGV-1332463_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1332463_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1332463_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1332463_42	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_43	phrog_533	248.2	0	portal protein	head and packaging
UniRef90	UHGV-1332463_43	UniRef90_A0A3R5WTT1	937.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1332463_43	476272.RUMHYD_01758	330.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1332463_43	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_45	phrog_556	91.8	5e-27	minor head protein	head and packaging
UniRef90	UHGV-1332463_45	UniRef90_UPI000E4A8F9F	144.0	6.91961e-42	minor capsid protein	N/A
eggNOG-mapper	UHGV-1332463_45	1449050.JNLE01000003_gene3886	53.1	0.000000648	N/A	N/A
Pfam	UHGV-1332463_45	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1332463_45	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_46	phrog_581	211.0	0	minor head protein	head and packaging
UniRef90	UHGV-1332463_46	UniRef90_A0A6L5YIK0	570.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1332463_46	645991.Sgly_0338	163.0	9.05939e-42	N/A	N/A
Pfam	UHGV-1332463_46	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1332463_46	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332463_46	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332463_47	1235790.C805_00057	60.5	0.0000000000231	N/A	N/A
structural_annotation	UHGV-1332463_47	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332463_48	658655.HMPREF0988_00919	84.3	1.19e-18	N/A	N/A
eggNOG-mapper	UHGV-1332463_49	658655.HMPREF0988_00918	87.8	4.51e-22	N/A	N/A
PHROG	UHGV-1332463_50	phrog_16490	217.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1332463_50	397290.C810_01328	200.0	0	N/A	N/A
PHROG	UHGV-1332463_51	phrog_20016	218.5	0	N/A	unknown function
UniRef90	UHGV-1332463_51	UniRef90_A0A285PT46	158.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1332463_51	397290.C810_05214	223.0	0	N/A	N/A
structural_annotation	UHGV-1332463_51	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332463_52	658655.HMPREF0988_00915	119.0	1.32e-30	N/A	N/A
PHROG	UHGV-1332463_53	phrog_1233	43.9	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-1332463_53	397290.C810_01336	123.0	3.15e-35	N/A	N/A
structural_annotation	UHGV-1332463_53	PF20352,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_55	phrog_194	54.2	0.000000000000003	head scaffolding protein	head and packaging
UniRef90	UHGV-1332463_55	UniRef90_UPI000E538A87	111.0	5.54e-27	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1332463_55	476272.RUMHYD_01775	100.0	1.08e-23	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1332463_55	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1332463_56	phrog_544	121.8	6e-36	major head protein	head and packaging
UniRef90	UHGV-1332463_56	UniRef90_A0A395X7A1	358.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_56	476272.RUMHYD_01776	312.0	0	N/A	N/A
structural_annotation	UHGV-1332463_56	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_57	phrog_541	92.2	4.4e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-1332463_57	476272.RUMHYD_01778	86.3	3.16e-19	N/A	N/A
PHROG	UHGV-1332463_58	phrog_3366	90.5	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1332463_58	1235790.C805_00078	157.0	0	N/A	N/A
structural_annotation	UHGV-1332463_58	PF20536,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332463_59	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_60	phrog_3099	83.1	3.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1332463_60	552396.HMPREF0863_00272	55.5	0.00000035	N/A	N/A
structural_annotation	UHGV-1332463_60	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332463_61	UniRef90_A0A412KF72	291.0	0	RNA polymerase subunit sigma	N/A
structural_annotation	UHGV-1332463_61	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_62	phrog_706	122.7	2.5e-36	N/A	unknown function
UniRef90	UHGV-1332463_62	UniRef90_C7GBZ7	263.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1332463_62	1235790.C805_00084	133.0	2.57e-36	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1332463_62	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1332463_62	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_63	phrog_1535	207.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1332463_63	1235800.C819_00476	170.0	2.05e-40	tape measure	N/A
COG	UHGV-1332463_63	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1332463_64	phrog_1194	42.5	0.0000000000094	N/A	unknown function
eggNOG-mapper	UHGV-1332463_64	1120746.CCNL01000014_gene2106	103.0	1.41e-26	N/A	N/A
structural_annotation	UHGV-1332463_64	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_65	phrog_13879	293.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1332463_65	1120746.CCNL01000014_gene2107	349.0	0	N/A	N/A
structural_annotation	UHGV-1332463_65	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1332463_67	phrog_18725	84.5	6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1332463_67	1226322.HMPREF1545_00062	89.0	3.13e-20	N/A	N/A
PHROG	UHGV-1332463_70	phrog_4105	92.5	3.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1332463_70	411459.RUMOBE_00911	156.0	0	N/A	N/A
PHROG	UHGV-1332463_71	phrog_1129	92.5	2.3e-27	holin	lysis
UniRef90	UHGV-1332463_71	UniRef90_A0A412KF76	172.0	0	Holin	N/A
eggNOG-mapper	UHGV-1332463_71	1256908.HMPREF0373_00463	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1332463_71	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1332463_71	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1332463_72	K01448	115.8	4.7e-34	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1332463_72	phrog_435	193.2	0	endolysin	lysis
UniRef90	UHGV-1332463_72	UniRef90_A0A1Q6KI91	462.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1332463_72	33035.JPJF01000090_gene96	177.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1332463_72	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1332463_72	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1332463_72	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1332463_72	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A