UHGV-1336334 (vOTU-075478)

Viral Genome: UHGV-1336334

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1336334
vOTU ID	vOTU-075478
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR413750_NODE_448_length_46009_cov_3.322366
Associated BioSample	SAMN00792095
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9742
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.73
Jumbo phage	No

Genome content
Genome length (bp)	46,009
GC content	43.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	924.89
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1336334_1	phrog_372	213.2	0	tail protein	tail
UniRef90	UHGV-1336334_1	UniRef90_A0A2U8UIA2	124.0	1.61e-26	Minor tail protein	N/A
eggNOG-mapper	UHGV-1336334_1	1235802.C823_05263	101.0	6.62e-20	N/A	N/A
Pfam	UHGV-1336334_1	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1336334_1	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1336334_1	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_2	phrog_16267	125.7	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1336334_2	1294142.CINTURNW_1706	145.0	1.69e-32	Phage minor structural protein	N/A
COG	UHGV-1336334_2	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1336334_3	phrog_511	271.3	0	internal virion protein	head and packaging
UniRef90	UHGV-1336334_3	UniRef90_A0A8D9UH72	309.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1336334_3	1519439.JPJG01000060_gene1903	350.0	0	N/A	N/A
structural_annotation	UHGV-1336334_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_4	phrog_12105	85.1	7.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1336334_4	1226322.HMPREF1545_03850	60.8	0.000000000346	N/A	N/A
Pfam	UHGV-1336334_5	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-1336334_5	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-1336334_6	phrog_16573	59.3	4e-17	N/A	unknown function
UniRef90	UHGV-1336334_6	UniRef90_UPI001CF901D5	212.0	0	phage baseplate upper protein	N/A
Pfam	UHGV-1336334_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1336334_6	PF20942,TIGR03503,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_7	phrog_15239	97.7	7.1e-29	N/A	unknown function
UniRef90	UHGV-1336334_7	UniRef90_R5AJ41	55.5	0.00000119	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1336334_7	1507.HMPREF0262_03462	58.2	0.000000003	N/A	N/A
PHROG	UHGV-1336334_8	phrog_1357	295.8	0	major head protein	head and packaging
UniRef90	UHGV-1336334_8	UniRef90_A0A416JW11	434.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1336334_8	1449126.JQKL01000003_gene1695	362.0	0	N/A	N/A
Pfam	UHGV-1336334_8	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1336334_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1336334_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_9	phrog_13908	262.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1336334_9	1321782.HMPREF1986_00346	103.0	7.05e-23	N/A	N/A
KOfam	UHGV-1336334_10	K07584	65.8	8.2e-19	N/A	N/A
PHROG	UHGV-1336334_10	phrog_4478	76.1	3.4e-22	peptidase	other
UniRef90	UHGV-1336334_10	UniRef90_UPI001F4B7803	138.0	5.18004e-41	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1336334_10	938278.CAJO01000046_gene324	62.4	0.0000000000225	Cysteine protease Prp	N/A
Pfam	UHGV-1336334_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1336334_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1336334_10	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_11	phrog_156	333.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1336334_11	748224.HMPREF9436_01396	572.0	0	N/A	N/A
structural_annotation	UHGV-1336334_11	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1336334_12	K06909	139.4	3.50002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1336334_12	phrog_979	127.3	3e-39	terminase large subunit	head and packaging
UniRef90	UHGV-1336334_12	UniRef90_UPI0010311CEE	585.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1336334_12	1410650.JHWL01000003_gene2834	551.0	0	N/A	N/A
Pfam	UHGV-1336334_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1336334_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1336334_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1336334_16	K01160	62.9	8.6e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1336334_16	phrog_34	65.1	1.1e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1336334_16	UniRef90_A0A498CNH4	150.0	5.32493e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1336334_16	1567011.A0A0A7S133_9VIRU	75.1	0.00000000000000367	Endodeoxyribonuclease RusA	N/A
KOfam	UHGV-1336334_17	K03111	130.7	1.9e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1336334_17	phrog_44	132.1	4.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1336334_17	UniRef90_A0A6N9QC10	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1336334_17	888727.HMPREF9092_0557	180.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1336334_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1336334_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1336334_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1336334_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1336334_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_18	phrog_2245	88.9	5.5e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1336334_18	UniRef90_A0A315Y0X2	52.0	0.00000146	MazG-like nucleotide pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1336334_18	1519439.JPJG01000059_gene1914	58.2	0.00000000174	N/A	N/A
structural_annotation	UHGV-1336334_18	PF10400,MF_01019,NF010671,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_19	phrog_9804	77.9	1.4e-22	N/A	unknown function
UniRef90	UHGV-1336334_19	UniRef90_G9WTJ5	112.0	3.83e-28	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1336334_19	903814.ELI_3550	90.9	1.97e-20	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1336334_19	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1336334_19	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_20	phrog_1163	100.5	1.9e-29	N/A	unknown function
UniRef90	UHGV-1336334_20	UniRef90_A0A842RZX0	134.0	4.19e-35	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1336334_20	1211817.CCAT010000049_gene2461	99.4	2.23e-22	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1336334_20	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1336334_20	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-1336334_20	PF07120,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_21	phrog_1389	64.3	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1336334_21	1347392.CCEZ01000060_gene3269	64.3	0.00000000000814	N/A	N/A
structural_annotation	UHGV-1336334_21	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_22	phrog_659	211.7	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1336334_22	UniRef90_A0A843HUJ5	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-1336334_22	1507.HMPREF0262_00431	213.0	0	N/A	N/A
Pfam	UHGV-1336334_22	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1336334_22	PF06378,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_24	phrog_2113	51.9	0.00000000000001	N/A	unknown function
Pfam	UHGV-1336334_24	PF08279	N/A	N/A	HTH domain	HTH_11
UniRef90	UHGV-1336334_27	UniRef90_UPI0019D34EB4	51.2	0.000000419	helix-turn-helix transcriptional regulator	N/A
KOfam	UHGV-1336334_28	K22300	49.1	0.00000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1336334_28	phrog_8	49.7	0.00000000000008	transcriptional regulator	transcription regulation
UniRef90	UHGV-1336334_28	UniRef90_A0A1M7NHZ7	123.0	2.13e-33	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1336334_28	1294142.CINTURNW_0292	104.0	9.79e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1336334_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1336334_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1336334_28	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_29	phrog_87	78.7	5.8e-23	metallo-protease	other
UniRef90	UHGV-1336334_29	UniRef90_A0A1C5T7C0	167.0	0	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-1336334_29	936573.HMPREF1147_1691	115.0	5.52e-31	N/A	N/A
Pfam	UHGV-1336334_29	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1336334_29	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1336334_29	PF06114,COG2856	N/A	N/A	N/A	N/A
Pfam	UHGV-1336334_30	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-1336334_30	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-1336334_30	PF02805	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1336334_32	1408312.JNJS01000003_gene2093	127.0	1.72e-37	N/A	N/A
UniRef90	UHGV-1336334_33	UniRef90_A0A2A7BC36	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-1336334_33	657322.FPR_11180	162.0	0	N/A	N/A
Pfam	UHGV-1336334_33	PF13711	N/A	N/A	N/A	DUF4160
PHROG	UHGV-1336334_34	phrog_2657	190.1	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1336334_34	UniRef90_A0A316QBC0	469.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1336334_34	653733.Selin_1708	370.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1336334_34	PF04383	N/A	N/A	KilA-N domain	KilA-N
COG	UHGV-1336334_34	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1336334_34	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-1336334_35	K06400	350.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1336334_35	phrog_95	339.2	0	integrase	integration and excision
UniRef90	UHGV-1336334_35	UniRef90_UPI0004162303	504.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1336334_35	1120998.AUFC01000013_gene2937	504.0	0	N/A	N/A
Pfam	UHGV-1336334_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1336334_35	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1336334_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1336334_35	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1336334_36	K07493	486.5	0	K07493; putative transposase	N/A
PHROG	UHGV-1336334_36	phrog_2331	496.9	0	transposase	integration and excision
UniRef90	UHGV-1336334_36	UniRef90_A0A7X6ZG45	654.0	0	Mutator family transposase	N/A
eggNOG-mapper	UHGV-1336334_36	1123288.SOV_1c03130	586.0	0	Transposase, mutator	N/A
Pfam	UHGV-1336334_36	PF00872	N/A	N/A	Transposase, Mutator family	Transposase_mut
NCBIFam	UHGV-1336334_36	NF033543.1	N/A	N/A	IS256 family transposase	N/A
COG	UHGV-1336334_36	COG3328	N/A	N/A	Transposase (or an inactivated derivative)	N/A
structural_annotation	UHGV-1336334_36	PF00872,NF033543,COG3328	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_37	phrog_10091	95.4	4.7e-28	holin	lysis
UniRef90	UHGV-1336334_37	UniRef90_A0A367GJ74	110.0	1.98e-29	Phage holin	N/A
eggNOG-mapper	UHGV-1336334_37	1449338.JQLU01000005_gene3786	104.0	6.91e-28	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1336334_37	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1336334_37	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1336334_37	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1336334_37	PF04531,COG5546	N/A	N/A	N/A	N/A
UniRef90	UHGV-1336334_38	UniRef90_UPI001E4D989F	85.1	2.33e-19	CTP synthase	N/A
KOfam	UHGV-1336334_39	K08640	83.5	4.7e-24	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1336334_39	phrog_894	75.8	6e-22	endolysin	lysis
UniRef90	UHGV-1336334_39	UniRef90_A0A4R2KCK9	92.8	2.42e-20	Peptidase M15-like protein	N/A
eggNOG-mapper	UHGV-1336334_39	445971.ANASTE_02319	84.0	6.22e-17	Peptidase M15	N/A
Pfam	UHGV-1336334_39	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-1336334_39	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1336334_39	COG3108	N/A	N/A	N/A	N/A
KOfam	UHGV-1336334_40	K19304	146.4	2.70451e-43	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1336334_40	phrog_22978	559.8	0	N/A	unknown function
UniRef90	UHGV-1336334_40	UniRef90_A0A416JVP5	430.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1336334_40	1410650.JHWL01000003_gene2814	369.0	0	N/A	N/A
Pfam	UHGV-1336334_40	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1336334_40	PF20573	N/A	N/A	N/A	DUF6782
Pfam	UHGV-1336334_40	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1336334_40	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
eggNOG-mapper	UHGV-1336334_41	1203606.HMPREF1526_02741	60.1	0.000000122	N/A	N/A
structural_annotation	UHGV-1336334_44	NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-1336334_47	phrog_24267	56.7	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1336334_47	445971.ANASTE_00089	99.4	3.52e-22	N/A	N/A
COG	UHGV-1336334_47	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1336334_47	COG4675	N/A	N/A	N/A	N/A