UHGV-1337593 (vOTU-146664)

Viral Genome: UHGV-1337593

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1337593
vOTU ID	vOTU-146664
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_SM_05_NODE_394_length_28065_cov_7.505177
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9704
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.43
Jumbo phage	No

Genome content
Genome length (bp)	28,065
GC content	64.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	90%
Average CDS length (bps)	661.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1337593_5	UniRef90_A0A7C7DD47	105.0	1.37e-27	Integration host factor	N/A
eggNOG-mapper	UHGV-1337593_5	1415166.NONO_c45160	99.4	9.85e-26	integration host factor	N/A
NCBIFam	UHGV-1337593_5	NF041260.1	N/A	N/A	integration host factor, actinobacterial type	N/A
COG	UHGV-1337593_5	COG0099	N/A	N/A	Ribosomal protein S13	N/A
structural_annotation	UHGV-1337593_5	PF00416,MF_01315,NF041260,COG0099	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1337593_7	PF06530	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_8	phrog_270	42.3	0.000000000016	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1337593_8	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-1337593_10	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_11	phrog_1492	40.1	0.000000000051	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337593_11	UniRef90_UPI0015FC2930	55.8	0.000000679	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-1337593_11	1196322.A370_02095	51.2	0.00000511	NUMOD4 motif	N/A
Pfam	UHGV-1337593_11	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
PHROG	UHGV-1337593_13	phrog_37844	50.9	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1337593_13	1033732.CAHI01000029_gene1359	67.0	0.0000000000611	N/A	N/A
UniRef90	UHGV-1337593_14	UniRef90_UPI001C98641B	89.7	6.08e-22	helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-1337593_15	K14060	145.6	4.1058e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1337593_15	phrog_125	171.8	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337593_15	UniRef90_UPI001BB21D57	252.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1337593_15	1211817.CCAT010000083_gene1704	184.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1337593_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1337593_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1337593_15	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_16	phrog_30113	170.3	0	N/A	unknown function
UniRef90	UHGV-1337593_16	UniRef90_UPI0013563993	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-1337593_16	77635.BISU_0173	160.0	0	N/A	N/A
Pfam	UHGV-1337593_16	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1337593_16	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_17	phrog_38	209.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1337593_17	UniRef90_UPI001C94A1AF	749.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1337593_17	1121866.AUGK01000003_gene1428	331.0	0	chromosome segregation	N/A
NCBIFam	UHGV-1337593_17	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1337593_17	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1337593_17	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_18	phrog_64	188.8	0	portal protein	head and packaging
UniRef90	UHGV-1337593_18	UniRef90_UPI001C94E255	645.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1337593_18	1121866.AUGK01000003_gene1429	352.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1337593_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1337593_18	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1337593_19	UniRef90_UPI001C9809E0	120.0	7.72e-31	N/A	N/A
Pfam	UHGV-1337593_19	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1337593_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_20	phrog_247	226.9	0	major head protein	head and packaging
UniRef90	UHGV-1337593_20	UniRef90_UPI001106BB9B	377.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1337593_20	903814.ELI_3208	283.0	0	N/A	N/A
Pfam	UHGV-1337593_20	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-1337593_20	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1337593_21	UniRef90_UPI001C9486FC	139.0	1.15999e-40	phage head-tail connector protein	N/A
structural_annotation	UHGV-1337593_21	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1337593_22	1121866.AUGK01000003_gene1432	62.4	0.000000000113	N/A	N/A
PHROG	UHGV-1337593_23	phrog_5	47.8	0.00000000000024	tail completion or Neck1 protein	connector
UniRef90	UHGV-1337593_23	UniRef90_UPI001C963648	128.0	6.34e-35	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1337593_23	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1337593_23	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1337593_24	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1337593_25	UniRef90_UPI001106E87B	159.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1337593_25	1232453.BAIF02000058_gene1634	84.0	1.27e-18	N/A	N/A
structural_annotation	UHGV-1337593_25	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1337593_26	UniRef90_UPI001C98833C	143.0	1.93996e-41	N/A	N/A
Pfam	UHGV-1337593_26	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1337593_26	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_28	phrog_1535	153.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1337593_28	1121866.AUGK01000003_gene1437	223.0	0	phage tail tape measure protein	N/A
COG	UHGV-1337593_28	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1337593_29	phrog_1194	104.9	4.9e-31	N/A	unknown function
UniRef90	UHGV-1337593_29	UniRef90_A0A0B3WNQ4	80.9	2.7e-17	N/A	N/A
eggNOG-mapper	UHGV-1337593_29	1121866.AUGK01000003_gene1438	137.0	4.21001e-40	N/A	N/A
Pfam	UHGV-1337593_29	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1337593_29	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1337593_30	phrog_6616	457.7	0	tail protein	tail
UniRef90	UHGV-1337593_30	UniRef90_UPI00085BC306	301.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1337593_30	1121866.AUGK01000003_gene1439	374.0	0	Phage minor structural protein	N/A
COG	UHGV-1337593_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1337593_30	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1337593_32	PF07761	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1337593_33	476272.RUMHYD_01994	82.4	3.94e-17	N/A	N/A
eggNOG-mapper	UHGV-1337593_34	1121866.AUGK01000006_gene893	87.0	0.00000000000000187	N/A	N/A
PHROG	UHGV-1337593_36	phrog_881	57.0	2.5e-16	holin	lysis
UniRef90	UHGV-1337593_36	UniRef90_A0A437UU50	86.3	8.73e-21	Holin	N/A
eggNOG-mapper	UHGV-1337593_36	158787.BSCA_1069	80.1	8.69e-19	Putative phage holin Dp-1	N/A
Pfam	UHGV-1337593_36	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1337593_36	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1337593_38	K01447	87.1	2.7e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1337593_38	phrog_14048	140.9	1.19993e-41	endolysin	lysis
UniRef90	UHGV-1337593_38	UniRef90_A0A229VY92	223.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1337593_38	585198.HMPREF0574_1006	211.0	0	CW_7 repeat	N/A
Pfam	UHGV-1337593_38	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1337593_38	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1337593_38	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A