UHGV-1338087 (vOTU-033651)

Viral Genome: UHGV-1338087

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1338087
vOTU ID	vOTU-033651
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR341688_NODE_545_length_41296_cov_3.494047
Associated BioSample	SAMN00715238
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.13 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9688
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.69
Jumbo phage	No

Genome content
Genome length (bp)	31,991
GC content	50.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	87%
Average CDS length (bps)	578.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1338087_1	phrog_18723	42.4	0.0000000000053	N/A	unknown function
eggNOG-mapper	UHGV-1338087_2	665956.HMPREF1032_03261	63.9	0.00000000692	N/A	N/A
PHROG	UHGV-1338087_3	phrog_3287	136.4	2.1e-40	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1338087_3	693746.OBV_23870	556.0	0	N/A	N/A
structural_annotation	UHGV-1338087_3	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_4	phrog_13046	42.6	0.000000000000089	N/A	unknown function
eggNOG-mapper	UHGV-1338087_4	693746.OBV_23880	88.2	1.09e-18	N/A	N/A
structural_annotation	UHGV-1338087_4	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_5	phrog_371	138.0	4.90006e-41	major head protein	head and packaging
UniRef90	UHGV-1338087_5	UniRef90_R5AAY6	682.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1338087_5	1226322.HMPREF1545_03848	289.0	0	N/A	N/A
Pfam	UHGV-1338087_5	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1338087_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_6	phrog_24113	47.4	0.00000000000022	N/A	unknown function
structural_annotation	UHGV-1338087_6	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_7	phrog_35275	45.0	0.0000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1338087_7	693746.OBV_23910	78.6	0.0000000000000716	N/A	N/A
PHROG	UHGV-1338087_10	phrog_156	276.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1338087_10	1519439.JPJG01000060_gene1886	479.0	0	N/A	N/A
structural_annotation	UHGV-1338087_10	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1338087_11	K04763	108.4	8.9e-32	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1338087_11	phrog_216	153.4	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-1338087_11	UniRef90_R5AM78	369.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1338087_11	97138.C820_00621	197.0	0	integrase family	N/A
Pfam	UHGV-1338087_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1338087_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1338087_11	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_12	phrog_24361	101.6	5.8e-30	terminase	head and packaging
UniRef90	UHGV-1338087_12	UniRef90_R5AHR8	1122.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1338087_12	693746.OBV_23980	532.0	0	phage Terminase large subunit	N/A
COG	UHGV-1338087_12	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1338087_12	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1338087_13	97138.C820_00620	55.8	0.0000000416	transposase activity	N/A
COG	UHGV-1338087_13	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-1338087_14	phrog_309	42.3	0.00000000001	terminase small subunit	head and packaging
UniRef90	UHGV-1338087_14	UniRef90_A0A844JNS5	55.5	0.000000138	Transposase	N/A
eggNOG-mapper	UHGV-1338087_14	642492.Clole_1852	78.6	3.93e-17	transposase activity	N/A
COG	UHGV-1338087_14	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1338087_16	PF07374,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1338087_18	K02314	379.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1338087_18	phrog_19	284.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1338087_18	UniRef90_R5AEW4	877.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1338087_18	293826.Amet_4768	272.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1338087_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1338087_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1338087_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1338087_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_19	phrog_6251	83.7	2.7e-24	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1338087_19	UniRef90_R5AB02	543.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1338087_19	1231057.AMGD01000018_gene3636	103.0	2.17e-23	Conserved phage C-terminus (Phg_2220_C)	N/A
COG	UHGV-1338087_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1338087_19	PF09681,TIGR01714,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1338087_22	760568.Desku_0919	93.6	7.38e-21	N/A	N/A
structural_annotation	UHGV-1338087_22	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_24	phrog_24386	270.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1338087_24	411460.RUMTOR_01374	228.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-1338087_24	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
KOfam	UHGV-1338087_27	K22300	59.0	1.7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1338087_27	phrog_8	56.5	1.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1338087_27	UniRef90_A0A401LG78	285.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1338087_27	935948.KE386495_gene1700	53.9	0.000000499	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1338087_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1338087_27	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-1338087_29	phrog_774	54.7	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1338087_29	397290.C810_05225	68.9	0.000000000000526	N/A	N/A
KOfam	UHGV-1338087_30	K03111	140.9	1.40004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1338087_30	phrog_44	141.2	6.09985e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1338087_30	UniRef90_R5AMA1	242.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1338087_30	97138.C820_02339	204.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1338087_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1338087_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1338087_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1338087_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1338087_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_31	phrog_1029	282.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1338087_31	1510440.A0A068EPX8_9CAUD	216.0	0	N/A	N/A
structural_annotation	UHGV-1338087_31	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1338087_32	phrog_997	105.6	3.9e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1338087_32	UniRef90_A0A350U067	239.0	0	Replication terminator protein	N/A
eggNOG-mapper	UHGV-1338087_32	1499683.CCFF01000017_gene2598	75.1	0.0000000000000015	replication terminator protein, phage associated	N/A
structural_annotation	UHGV-1338087_34	PF06257,TIGR02728,COG4466	N/A	N/A	N/A	N/A
KOfam	UHGV-1338087_43	K18830	45.9	0.00000000000099	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1338087_43	phrog_4	42.3	0.000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-1338087_43	UniRef90_R5AEY7	244.0	0	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1338087_43	1235797.C816_03553	109.0	1.95e-28	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1338087_43	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1338087_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1338087_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1338087_45	UniRef90_A0A4U7JFZ1	72.8	0.000000000000196	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1338087_45	1163671.JAGI01000002_gene1685	85.9	5.65e-19	Flagellar rod assembly protein muramidase FlgJ	N/A
COG	UHGV-1338087_45	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-1338087_46	K06400	280.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1338087_46	phrog_95	293.2	0	integrase	integration and excision
UniRef90	UHGV-1338087_46	UniRef90_R5AMB7	1011.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1338087_46	697281.Mahau_2563	483.0	0	resolvase	N/A
Pfam	UHGV-1338087_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1338087_46	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1338087_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1338087_46	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1338087_48	K21405	240.4	0	acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR	N/A
PHROG	UHGV-1338087_48	phrog_7998	124.4	9.7e-37	N/A	unknown function
UniRef90	UHGV-1338087_48	UniRef90_A0A401LG66	493.0	0	Sigma-54 factor interaction domain-containing protein	N/A
eggNOG-mapper	UHGV-1338087_48	350688.Clos_0171	309.0	0	PFAM sigma-54 factor interaction domain-containing protein	N/A
PADLOC	UHGV-1338087_48	RtcR_PspF2--CARF_AAA_HTH_MK_CARF_00012586	188.5	0	N/A	CRISPR-CAS
Pfam	UHGV-1338087_48	PF00158	N/A	N/A	Sigma-54 interaction domain	Sigma54_activat
COG	UHGV-1338087_48	COG3829	N/A	N/A	RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains	N/A