UHGV-1340328 (vOTU-078520)

Viral Genome: UHGV-1340328

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1340328
vOTU ID	vOTU-078520
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR413565_NODE_117_length_72356_cov_9.624376
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9567
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.04
Jumbo phage	No

Genome content
Genome length (bp)	50,388
GC content	55.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	805.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1340328_3	K18640	143.2	2.20004e-42	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-1340328_3	phrog_691	117.9	7.3e-35	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1340328_3	UniRef90_A0A1T4Y208	497.0	0	Plasmid segregation protein ParM (Fragment)	N/A
eggNOG-mapper	UHGV-1340328_3	610130.Closa_1117	380.0	0	cell division	N/A
Pfam	UHGV-1340328_3	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
Pfam	UHGV-1340328_3	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-1340328_3	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-1340328_3	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1340328_4	411467.BACCAP_03414	66.2	0.00000000000255	N/A	N/A
eggNOG-mapper	UHGV-1340328_5	742738.HMPREF9460_01916	75.9	4.28e-16	N/A	N/A
UniRef90	UHGV-1340328_6	UniRef90_A0A1T4Y8P4	2211.0	0	Cna protein B-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1340328_6	97139.C824_03632	460.0	0	domain protein	N/A
Pfam	UHGV-1340328_6	PF11974	N/A	N/A	Bacterial alpha-2-macroglobulin MG3 domain	bMG3
Pfam	UHGV-1340328_6	PF17802	N/A	N/A	Prealbumin-like fold domain	SpaA
COG	UHGV-1340328_6	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
KOfam	UHGV-1340328_7	K08600	181.1	0	srtB; sortase B [EC:3.4.22.71]	N/A
UniRef90	UHGV-1340328_7	UniRef90_UPI0011C9F87A	365.0	0	class B sortase	N/A
eggNOG-mapper	UHGV-1340328_7	411471.SUBVAR_07399	152.0	5.22684e-43	Sortase family	N/A
Pfam	UHGV-1340328_7	PF04203	N/A	N/A	Sortase domain	Sortase
COG	UHGV-1340328_7	COG4509	N/A	N/A	N/A	N/A
KOfam	UHGV-1340328_8	K06223	221.8	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1340328_8	phrog_56	184.7	0	DNA methyltransferase	other
UniRef90	UHGV-1340328_8	UniRef90_UPI001C3B62EA	357.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1340328_8	411471.SUBVAR_06973	328.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1340328_8	MTase_II_00039	133.3	3.7e-39	Type II methyltransferase	RM
Pfam	UHGV-1340328_8	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1340328_8	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1340328_8	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_9	phrog_13256	63.8	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1340328_9	1226322.HMPREF1545_00132	48.5	0.00000109	N/A	N/A
KOfam	UHGV-1340328_10	K21472	64.6	2e-18	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-1340328_10	phrog_14988	42.0	0.0000000000095	peptidase	other
UniRef90	UHGV-1340328_10	UniRef90_A0A2V2FF85	257.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-1340328_10	411471.SUBVAR_05145	234.0	0	heme binding	N/A
Pfam	UHGV-1340328_10	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1340328_10	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1340328_10	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
KOfam	UHGV-1340328_12	K00986	62.8	4.6e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1340328_12	phrog_1423	109.9	2.4e-32	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1340328_12	UniRef90_A0A348T010	703.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-1340328_12	657322.FPR_27160	383.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1340328_12	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1340328_12	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_13	phrog_17147	329.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1340328_13	657322.FPR_27150	669.0	0	N/A	N/A
eggNOG-mapper	UHGV-1340328_14	411462.DORLON_00771	93.6	3.67e-18	N/A	N/A
structural_annotation	UHGV-1340328_14	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1340328_15	1469948.JPNB01000001_gene535	56.6	0.00000504	domain, Protein	N/A
COG	UHGV-1340328_15	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1340328_15	PF18463	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_16	phrog_18725	44.2	0.0000000000028	N/A	unknown function
eggNOG-mapper	UHGV-1340328_16	1120746.CCNL01000014_gene2212	99.4	5.26e-25	N/A	N/A
PHROG	UHGV-1340328_17	phrog_13879	278.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1340328_17	1120746.CCNL01000014_gene2107	330.0	0	N/A	N/A
structural_annotation	UHGV-1340328_17	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_18	phrog_1194	68.1	1.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1340328_18	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-1340328_18	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_19	phrog_1535	238.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1340328_19	665956.HMPREF1032_03628	191.0	0	domain protein	N/A
COG	UHGV-1340328_19	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_20	phrog_706	107.5	1.1e-31	N/A	unknown function
UniRef90	UHGV-1340328_20	UniRef90_UPI0013141117	233.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1340328_20	665956.HMPREF1032_03058	214.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1340328_20	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1340328_20	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_21	phrog_11299	91.0	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1340328_21	665956.HMPREF1032_03059	118.0	3.69e-32	N/A	N/A
structural_annotation	UHGV-1340328_21	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_22	phrog_3099	152.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1340328_22	411471.SUBVAR_06936	257.0	0	N/A	N/A
structural_annotation	UHGV-1340328_22	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_23	phrog_3266	44.3	0.0000000000024	tail completion	connector
eggNOG-mapper	UHGV-1340328_23	693746.OBV_18140	186.0	0	N/A	N/A
structural_annotation	UHGV-1340328_23	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_24	phrog_556	45.0	0.0000000000018	minor head protein	head and packaging
UniRef90	UHGV-1340328_24	UniRef90_UPI001967B4B3	157.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1340328_24	999411.HMPREF1092_03318	50.8	0.0000021	Minor capsid protein	N/A
Pfam	UHGV-1340328_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1340328_24	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1340328_25	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_26	phrog_541	41.4	0.000000000021	head-tail adaptor	connector
eggNOG-mapper	UHGV-1340328_26	693746.OBV_18110	79.3	1.49e-17	N/A	N/A
PHROG	UHGV-1340328_28	phrog_422	213.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1340328_28	693746.OBV_18090	337.0	0	N/A	N/A
structural_annotation	UHGV-1340328_28	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_29	phrog_194	82.6	5.9e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1340328_29	UniRef90_A0A4R1QTK7	194.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1340328_29	411471.SUBVAR_06994	216.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1340328_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1340328_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_32	phrog_581	189.6	0	minor head protein	head and packaging
UniRef90	UHGV-1340328_32	UniRef90_UPI00196795ED	352.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1340328_32	411471.SUBVAR_06995	542.0	0	N/A	N/A
Pfam	UHGV-1340328_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1340328_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1340328_32	PF06152,PF14220	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_33	phrog_533	176.6	0	portal protein	head and packaging
UniRef90	UHGV-1340328_33	UniRef90_D1PRG7	595.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1340328_33	411471.SUBVAR_06996	595.0	0	N/A	N/A
structural_annotation	UHGV-1340328_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1340328_35	K06909	377.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1340328_35	phrog_3717	150.7	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1340328_35	UniRef90_A0A6N8H4Y1	805.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1340328_35	411471.SUBVAR_06998	713.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1340328_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1340328_35	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1340328_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1340328_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1340328_35	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1340328_37	K02601	61.1	1.8e-17	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-1340328_37	phrog_6386	93.9	1.4e-27	transcription antiterminator	transcription regulation
UniRef90	UHGV-1340328_37	UniRef90_A0A6N8H0F4	321.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-1340328_37	411471.SUBVAR_07000	207.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-1340328_37	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-1340328_37	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-1340328_37	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_38	phrog_426	95.5	6.6e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1340328_38	UniRef90_A0A6N8H2N8	363.0	0	N/A	N/A
eggNOG-mapper	UHGV-1340328_38	411471.SUBVAR_07001	316.0	0	N/A	N/A
Pfam	UHGV-1340328_38	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-1340328_38	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_39	phrog_25462	97.8	7.1e-29	N/A	unknown function
UniRef90	UHGV-1340328_39	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-1340328_39	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-1340328_39	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_40	phrog_462	44.7	4.5e-16	lipoprotein	other
eggNOG-mapper	UHGV-1340328_40	411471.SUBVAR_07003	102.0	2.81e-26	N/A	N/A
PHROG	UHGV-1340328_41	phrog_836	56.0	4.6e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-1340328_41	UniRef90_A0A6N8H2N1	196.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1340328_41	411471.SUBVAR_07004	137.0	1.15999e-40	Mor transcription activator	N/A
Pfam	UHGV-1340328_41	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-1340328_41	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-1340328_41	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_42	phrog_286	72.1	9.3e-21	N/A	unknown function
UniRef90	UHGV-1340328_42	UniRef90_A0A6N8H086	259.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-1340328_42	411471.SUBVAR_07005	226.0	0	N/A	N/A
Pfam	UHGV-1340328_42	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-1340328_42	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_44	phrog_491	99.1	4.1e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1340328_44	UniRef90_A0A6N3F7T2	224.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-1340328_44	411471.SUBVAR_07006	224.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-1340328_44	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-1340328_44	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-1340328_44	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-1340328_45	phrog_5671	95.6	4.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1340328_45	552398.HMPREF0866_03130	106.0	7.1e-28	N/A	N/A
KOfam	UHGV-1340328_47	K07132	117.6	1.1e-34	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-1340328_47	phrog_296	151.0	8.40779e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-1340328_47	UniRef90_A0A6N8H4X2	541.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1340328_47	411471.SUBVAR_07009	521.0	0	AAA domain	N/A
Pfam	UHGV-1340328_47	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-1340328_47	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-1340328_48	phrog_310	353.6	0	transposase	integration and excision
UniRef90	UHGV-1340328_48	UniRef90_A0A6N8H399	1111.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1340328_48	411471.SUBVAR_07010	1012.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-1340328_48	TnsB_0_V-K	47.9	0.00000000000015	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-1340328_48	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-1340328_48	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-1340328_48	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1340328_52	UniRef90_UPI000AE5279C	81.3	1.15e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1340328_52	1232446.BAIE02000002_gene796	55.1	0.00000000419	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1340328_52	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1340328_52	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1340328_53	K22300	59.7	6.8e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1340328_53	phrog_2439	51.2	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1340328_53	UniRef90_A0A3E3E453	92.0	1.79e-20	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1340328_53	1235798.C817_02945	77.0	3.6e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1340328_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1340328_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1340328_54	UniRef90_UPI00164EBCA8	266.0	0	recombinase family protein	N/A
Pfam	UHGV-1340328_54	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
KOfam	UHGV-1340328_57	K12063	523.6	0	traC; conjugal transfer ATP-binding protein TraC	N/A
PHROG	UHGV-1340328_57	phrog_2666	64.0	4.4e-28	terminase large subunit	head and packaging
UniRef90	UHGV-1340328_57	UniRef90_UPI0011CB4431	1851.0	0	PrgI family protein	N/A
eggNOG-mapper	UHGV-1340328_57	1235835.C814_02585	1131.0	0	AAA-like domain	N/A
Pfam	UHGV-1340328_57	PF19044	N/A	N/A	TraG P-loop domain	P-loop_TraG
COG	UHGV-1340328_57	COG3451	N/A	N/A	Type IV secretory pathway, VirB4 component	N/A
KOfam	UHGV-1340328_58	K07473	62.0	1.4e-17	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-1340328_58	phrog_2737	52.3	0.0000000000000063	N/A	unknown function
UniRef90	UHGV-1340328_58	UniRef90_A0A1Q6KN69	195.0	0	Phosphatase	N/A
eggNOG-mapper	UHGV-1340328_58	665956.HMPREF1032_03532	154.0	0	RelB antitoxin	N/A
Pfam	UHGV-1340328_58	PF04221	N/A	N/A	RelB antitoxin	RelB
COG	UHGV-1340328_58	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-1340328_58	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A