UHGV-1341351 (vOTU-059694)

Viral Genome: UHGV-1341351

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1341351
vOTU ID	vOTU-059694
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_SM_29_NODE_210_length_37566_cov_26.899736
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.33
Jumbo phage	No

Genome content
Genome length (bp)	37,566
GC content	29.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	518.50
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1341351_1	K14059	202.9	0	int; integrase	N/A
PHROG	UHGV-1341351_1	phrog_1	185.5	0	integrase	integration and excision
UniRef90	UHGV-1341351_1	UniRef90_UPI0015C5C81A	223.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1341351_1	1235799.C818_03513	154.0	1.06e-40	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1341351_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1341351_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1341351_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1341351_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_3	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_4	K22299	43.0	0.0000000000099	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1341351_4	phrog_8	61.1	2.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1341351_4	UniRef90_H2JIU8	91.3	1.08e-21	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-1341351_4	755731.Clo1100_0530	91.3	1.81e-22	transcriptional regulator	N/A
Pfam	UHGV-1341351_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1341351_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1341351_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_5	K07729	57.6	3.2e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1341351_5	phrog_3	47.7	0.00000000000067	transcriptional repressor	transcription regulation
UniRef90	UHGV-1341351_5	UniRef90_UPI000471D82B	57.8	0.00000000264	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1341351_5	494416.AYXN01000040_gene2433	57.8	0.000000000442	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-1341351_5	retron_type_VI_hth_cluster2_1	48.0	0.00000000000036	N/A	Retron
Pfam	UHGV-1341351_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1341351_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1341351_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_6	PF09035,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_10	phrog_124	132.8	2.2e-39	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341351_10	UniRef90_UPI0018C46309	320.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1341351_10	445972.ANACOL_00146	295.0	0	AAA domain	N/A
Pfam	UHGV-1341351_10	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1341351_10	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1341351_10	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341351_11	UniRef90_A0A7X5DCB3	144.0	1.47e-40	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1341351_11	718252.FP2_01050	75.1	0.0000000000000287	N/A	N/A
KOfam	UHGV-1341351_12	K03111	107.2	2.7e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1341351_12	phrog_44	111.5	9.3e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341351_12	UniRef90_R6XT61	157.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1341351_12	398512.JQKC01000002_gene1869	131.0	4.67e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1341351_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1341351_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1341351_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1341351_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1341351_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_13	phrog_72	70.3	3.1e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341351_13	UniRef90_A0A8D9PDS2	143.0	3.75e-40	NinB protein	N/A
eggNOG-mapper	UHGV-1341351_13	1399942.U3PCT8_9CAUD	135.0	9.87e-38	N/A	N/A
Pfam	UHGV-1341351_13	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1341351_13	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_14	phrog_7566	51.7	0.0000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-1341351_14	1118057.CAGX01000020_gene1648	63.5	0.0000000000166	N/A	N/A
PHROG	UHGV-1341351_15	phrog_2514	70.4	2.7e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341351_15	UniRef90_A0A345AQ26	101.0	1.61e-25	Replication initiation protein	N/A
eggNOG-mapper	UHGV-1341351_15	1168613.I1W658_9CAUD	101.0	8.19e-25	calcium ion binding	N/A
PHROG	UHGV-1341351_16	phrog_678	54.7	0.0000000000000022	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1341351_16	1120998.AUFC01000013_gene2941	76.6	0.00000000000000729	N/A	N/A
PHROG	UHGV-1341351_17	phrog_1123	52.1	0.0000000000000099	N/A	unknown function
UniRef90	UHGV-1341351_17	UniRef90_A0A7X6P6Q9	67.0	0.0000000000026	DNA gyrase	N/A
eggNOG-mapper	UHGV-1341351_17	445972.ANACOL_03346	64.7	0.00000000000333	N/A	N/A
structural_annotation	UHGV-1341351_17	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_18	1304866.K413DRAFT_4602	59.7	0.000000000109	N/A	N/A
KOfam	UHGV-1341351_21	K00571	109.3	4.6e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1341351_21	phrog_67	102.0	4.3e-31	DNA methyltransferase	other
UniRef90	UHGV-1341351_21	UniRef90_UPI001BA5F7AD	389.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1341351_21	1123315.AUIP01000014_gene1936	381.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-1341351_21	MTase_II_00157	90.9	2.8e-27	Type II methyltransferase	RM
Pfam	UHGV-1341351_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1341351_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1341351_21	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_22	1121335.Clst_0378	75.9	5.43e-17	N/A	N/A
PHROG	UHGV-1341351_25	phrog_625	70.6	1.7e-20	N/A	unknown function
UniRef90	UHGV-1341351_25	UniRef90_A0A3A8X7G1	112.0	6.8e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1341351_25	1235800.C819_02245	108.0	5.34e-29	N/A	N/A
structural_annotation	UHGV-1341351_25	PF12961	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_28	phrog_7880	72.9	4.1e-21	N/A	unknown function
PHROG	UHGV-1341351_29	phrog_757	43.2	0.0000000000044	DNA methyltransferase	other
eggNOG-mapper	UHGV-1341351_29	658655.HMPREF0988_00884	212.0	0	N/A	N/A
AcrCatalog	UHGV-1341351_29	cluster_47493	134.0	7.45e-41	NA	N/A
structural_annotation	UHGV-1341351_29	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_32	phrog_59	160.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341351_32	UniRef90_UPI001E4F9478	150.0	6.51604e-43	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1341351_32	1229751.R9QM99_9CAUD	139.0	2.12e-39	HNH endonuclease	N/A
PADLOC	UHGV-1341351_32	HEase_00016	102.8	3.4e-30	homing endonuclease	RM
Pfam	UHGV-1341351_32	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1341351_32	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-1341351_32	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-1341351_32	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_35	PF15188	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_36	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_40	K07474	109.7	5.6e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1341351_40	phrog_51	125.5	3e-37	terminase small subunit	head and packaging
UniRef90	UHGV-1341351_40	UniRef90_R6HDV5	199.0	0	Prophage LambdaCh01 terminase small subunit	N/A
eggNOG-mapper	UHGV-1341351_40	1235800.C819_00494	142.0	8.01963e-42	Terminase small subunit	N/A
Pfam	UHGV-1341351_40	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1341351_40	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1341351_40	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_41	K06909	163.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1341351_41	phrog_3717	142.4	2.7003e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1341351_41	UniRef90_R6H5U4	337.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1341351_41	526218.Sterm_1426	238.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1341351_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1341351_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1341351_41	PF04466,MF_04145,NF002340,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_42	K06909	246.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1341351_42	phrog_5653	198.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1341351_42	UniRef90_R6HF73	466.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1341351_42	1408823.AXUS01000024_gene2712	392.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1341351_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1341351_42	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1341351_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1341351_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1341351_42	PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_43	phrog_64	191.9	0	portal protein	head and packaging
UniRef90	UHGV-1341351_43	UniRef90_R6I230	920.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1341351_43	665956.HMPREF1032_03614	261.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1341351_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1341351_43	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341351_45	UniRef90_R7IWF4	414.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1341351_45	665956.HMPREF1032_03615	65.9	0.0000000161	cell adhesion	N/A
COG	UHGV-1341351_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_45	TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_48	phrog_172	81.1	2e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-1341351_48	UniRef90_R6HDW5	243.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1341351_48	1235800.C819_00486	65.9	0.000000000241	N/A	N/A
Pfam	UHGV-1341351_48	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1341351_48	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_49	phrog_422	216.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1341351_49	1123263.AUKY01000051_gene1080	241.0	0	N/A	N/A
structural_annotation	UHGV-1341351_49	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_51	PF05135,TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_52	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_53	445972.ANACOL_01849	67.4	0.0000000000146	N/A	N/A
structural_annotation	UHGV-1341351_53	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_54	665956.HMPREF1032_03624	51.6	0.00000168	N/A	N/A
structural_annotation	UHGV-1341351_54	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_55	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-1341351_56	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-1341351_56	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_58	phrog_10292	53.7	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-1341351_58	UniRef90_R7IWE1	171.0	0	TM2 domain protein	N/A
eggNOG-mapper	UHGV-1341351_58	1322246.BN4_11117	100.0	1.67e-26	TM2 domain	N/A
Pfam	UHGV-1341351_58	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1341351_58	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341351_58	PF05154,COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1341351_59	K06240	40.4	1.1e-16	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-1341351_59	phrog_1535	263.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1341351_59	1304866.K413DRAFT_3046	140.0	4.6e-31	N/A	N/A
COG	UHGV-1341351_59	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1341351_59	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_60	phrog_1194	113.9	8.4e-34	N/A	unknown function
structural_annotation	UHGV-1341351_60	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_61	1294142.CINTURNW_1706	63.9	0.00000000115	Phage minor structural protein	N/A
COG	UHGV-1341351_61	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1341351_61	PF21683,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341351_62	428127.EUBDOL_01565	73.2	0.000000000369	cellulase activity	N/A
COG	UHGV-1341351_62	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-1341351_63	phrog_372	243.4	0	tail protein	tail
UniRef90	UHGV-1341351_63	UniRef90_R7FHU8	197.0	0	Tail protein	N/A
eggNOG-mapper	UHGV-1341351_63	1235799.C818_01005	111.0	3.25e-23	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1341351_63	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1341351_63	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1341351_63	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-1341351_64	phrog_937	46.4	0.00000000000074	hemolysin	other
KOfam	UHGV-1341351_66	K11062	56.3	3.2e-16	entD; probable enterotoxin D	N/A
PHROG	UHGV-1341351_66	phrog_18955	44.3	5.9e-18	N/A	unknown function
UniRef90	UHGV-1341351_66	UniRef90_R7LPC2	166.0	1.30321e-43	Peptidoglycan-binding domain 1 protein	N/A
eggNOG-mapper	UHGV-1341351_66	1304880.JAGB01000002_gene2417	80.5	0.0000000000000925	Spoiid lytb domain protein	N/A
Pfam	UHGV-1341351_66	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-1341351_66	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1341351_66	COG2385	N/A	N/A	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	N/A
structural_annotation	UHGV-1341351_66	PF03412,PF18342,PF06347,NF040670,NF033920,COG3807,COG3271	N/A	N/A	N/A	N/A