UHGV-1341707 (vOTU-009575)

Viral Genome: UHGV-1341707

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1341707
vOTU ID	vOTU-009575
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_10013_NODE_162_length_36446_cov_4.809678
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.28 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9697
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.8
Jumbo phage	No

Genome content
Genome length (bp)	36,446
GC content	27.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	93%
Average CDS length (bps)	531.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-1341707_1	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1341707_2	phrog_18725	73.1	4.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1341707_2	1120746.CCNL01000014_gene2212	64.3	0.0000000000381	N/A	N/A
PHROG	UHGV-1341707_3	phrog_13879	219.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1341707_3	665956.HMPREF1032_03630	154.0	9.44e-37	N/A	N/A
structural_annotation	UHGV-1341707_3	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_4	phrog_1194	64.5	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1341707_4	742740.HMPREF9474_03515	51.2	0.00000242	N/A	N/A
KOfam	UHGV-1341707_5	K10421	45.5	0.00000000000046	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1341707_5	phrog_1535	113.7	1.2e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1341707_5	1280692.AUJL01000027_gene2150	79.0	0.00000000000644	phage tail tape measure protein	N/A
COG	UHGV-1341707_5	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341707_7	PF12363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341707_9	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341707_10	665956.HMPREF1032_03624	58.5	0.00000000378	N/A	N/A
structural_annotation	UHGV-1341707_10	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341707_11	665956.HMPREF1032_03623	83.2	1.4e-17	N/A	N/A
structural_annotation	UHGV-1341707_11	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341707_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341707_14	PF12949,PF18885	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341707_15	UniRef90_A0A3D1PN29	269.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1341707_15	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_16	phrog_172	96.7	3e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-1341707_16	UniRef90_A0A386PKZ2	77.8	0.000000000000062	N/A	N/A
eggNOG-mapper	UHGV-1341707_16	1499683.CCFF01000014_gene3909	75.1	0.000000000000127	N/A	N/A
Pfam	UHGV-1341707_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1341707_16	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341707_18	UniRef90_R5MSH4	432.0	0	Phage head morphogenesis protein SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1341707_18	139871.A9D9S7_9VIRU	66.6	0.00000000813	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-1341707_18	PF03496,PF04233,MF_04142,NF041404,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_19	phrog_64	184.6	0	portal protein	head and packaging
UniRef90	UHGV-1341707_19	UniRef90_R5MTF8	952.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1341707_19	665956.HMPREF1032_03614	263.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1341707_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1341707_19	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_20	phrog_30251	583.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1341707_20	UniRef90_R5M9P5	853.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1341707_20	1522092.A0A090EUA8_9CAUD	504.0	0	Pfam:Terminase_6C	N/A
Pfam	UHGV-1341707_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1341707_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1341707_20	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-1341707_20	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1341707_21	K07474	111.6	1.4e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1341707_21	phrog_51	120.7	1.1e-35	terminase small subunit	head and packaging
UniRef90	UHGV-1341707_21	UniRef90_R5MF68	254.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1341707_21	445335.CBN_2993	123.0	7.54e-33	Terminase small subunit	N/A
Pfam	UHGV-1341707_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1341707_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1341707_21	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_22	phrog_1233	87.0	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1341707_22	411490.ANACAC_00786	96.3	8.47e-23	N/A	N/A
PHROG	UHGV-1341707_26	phrog_36	60.4	4.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1341707_26	UniRef90_R6SME5	78.2	0.0000000000000103	DNA-directed RNA polymerase specialized sigma subunit sigma24	N/A
eggNOG-mapper	UHGV-1341707_26	1196322.A370_01361	75.9	0.0000000000000161	DNA-templated transcription, initiation	N/A
COG	UHGV-1341707_26	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1341707_26	PF06530,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_31	phrog_1891	219.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_31	UniRef90_A0A386PKY6	186.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1341707_31	696281.Desru_1079	153.0	3.22299e-44	HNH endonuclease	N/A
Pfam	UHGV-1341707_31	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1341707_31	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_32	phrog_2044	73.2	2.6e-21	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_32	UniRef90_E3DDU9	63.5	0.0000000000163	N/A	N/A
eggNOG-mapper	UHGV-1341707_32	634499.EpC_17520	63.9	0.00000000000192	N/A	N/A
structural_annotation	UHGV-1341707_32	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_35	phrog_24658	74.8	1.1e-21	N/A	unknown function
KOfam	UHGV-1341707_36	K14680	96.9	2.1e-28	E6.5.1.3; RNA ligase [EC:6.5.1.3]	N/A
PHROG	UHGV-1341707_36	phrog_8238	313.0	0	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_36	UniRef90_A0A417CDB6	290.0	0	Calcineurin	N/A
eggNOG-mapper	UHGV-1341707_36	657322.FPR_23120	265.0	0	PNKP adenylyltransferase domain, ligase domain	N/A
Pfam	UHGV-1341707_36	PF09511	N/A	N/A	RNA ligase	RNA_lig_T4_1
COG	UHGV-1341707_36	COG0639	N/A	N/A	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	N/A
KOfam	UHGV-1341707_37	K07313	68.5	9.5e-20	pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]	N/A
PHROG	UHGV-1341707_37	phrog_8238	319.3	0	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_37	UniRef90_UPI001CD287D6	272.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1341707_37	411474.COPEUT_00782	281.0	0	AAA domain	N/A
Pfam	UHGV-1341707_37	PF13671	N/A	N/A	AAA domain	AAA_33
Pfam	UHGV-1341707_37	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1341707_37	COG0639	N/A	N/A	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	N/A
PHROG	UHGV-1341707_39	phrog_1934	141.2	3.39955e-42	N/A	unknown function
UniRef90	UHGV-1341707_39	UniRef90_UPI0005603695	147.0	9.09443e-43	zinc-finger-containing protein	N/A
eggNOG-mapper	UHGV-1341707_39	445972.ANACOL_00149	107.0	4.05e-28	COG NOG19595 non supervised orthologous group	N/A
Pfam	UHGV-1341707_39	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-1341707_39	PF11672	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_41	phrog_2245	79.5	4.9e-23	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1341707_41	428127.EUBDOL_01514	49.7	0.00000254	N/A	N/A
structural_annotation	UHGV-1341707_41	PF02185	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_42	phrog_4973	47.0	0.00000000000044	N/A	unknown function
Pfam	UHGV-1341707_42	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1341707_42	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_43	phrog_72	51.6	0.000000000000014	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1341707_43	428127.EUBDOL_01246	103.0	1.43e-25	N/A	N/A
Pfam	UHGV-1341707_43	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1341707_43	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-1341707_44	K03111	130.7	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1341707_44	phrog_44	141.4	5.70048e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_44	UniRef90_R5MS63	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1341707_44	1347087.CBYO010000020_gene2914	128.0	1.13e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1341707_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1341707_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1341707_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1341707_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1341707_44	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_47	phrog_298	57.5	1.3e-16	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_47	UniRef90_A0A3D5XTJ3	159.0	1.4013e-45	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1341707_47	1122981.AUME01000026_gene554	80.5	0.00000000000000263	YqaJ viral recombinase family	N/A
Pfam	UHGV-1341707_47	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-1341707_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1341707_47	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_48	phrog_6244	43.3	0.0000000000084	N/A	unknown function
structural_annotation	UHGV-1341707_48	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341707_51	UniRef90_A0A6A8SK39	60.8	0.00000000911	Inhibitor_G39P domain-containing protein	N/A
Pfam	UHGV-1341707_51	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-1341707_52	phrog_428	110.4	2.3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341707_52	UniRef90_UPI000B1808B0	109.0	1.85e-25	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1341707_52	469604.HMPREF0946_00822	111.0	6.89e-27	Transcriptional regulator	N/A
Pfam	UHGV-1341707_52	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1341707_52	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1341707_52	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1341707_52	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1341707_52	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341707_56	UniRef90_Q6R856	91.7	1.07e-22	77ORF077	N/A
eggNOG-mapper	UHGV-1341707_56	663241.C9E2M2_9CAUD	81.3	2.03e-19	N/A	N/A
Pfam	UHGV-1341707_56	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1341707_56	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1341707_57	K22300	45.0	0.0000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1341707_57	phrog_2967	56.2	7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1341707_57	UniRef90_A0A564SCK3	116.0	2.75e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1341707_57	1121947.AUHK01000002_gene902	101.0	1.11e-24	Peptidase S24-like	N/A
Pfam	UHGV-1341707_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1341707_57	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1341707_57	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1341707_58	K06400	299.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1341707_58	phrog_95	306.3	0	integrase	integration and excision
UniRef90	UHGV-1341707_58	UniRef90_A0A845R7H2	300.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1341707_58	411470.RUMGNA_02175	296.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1341707_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1341707_58	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1341707_58	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1341707_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1341707_58	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_59	phrog_7566	52.5	0.0000000000000095	N/A	unknown function
eggNOG-mapper	UHGV-1341707_59	1118057.CAGX01000020_gene1648	57.4	0.00000000739	N/A	N/A
KOfam	UHGV-1341707_60	K01447	71.1	2.2e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1341707_60	phrog_7698	180.7	0	endolysin	lysis
UniRef90	UHGV-1341707_60	UniRef90_A0A1T4Q4P7	183.0	0	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein	N/A
eggNOG-mapper	UHGV-1341707_60	936375.HMPREF1152_1092	132.0	1.68e-34	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-1341707_60	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1341707_60	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1341707_60	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1341707_60	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-1341707_62	phrog_199	105.7	4.6e-31	holin	lysis
UniRef90	UHGV-1341707_62	UniRef90_UPI000246B789	161.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1341707_62	1567013.A0A0A7RTU1_9CAUD	120.0	6.34e-33	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-1341707_62	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1341707_62	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1341707_62	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341707_63	PF00386,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1341707_64	1123075.AUDP01000020_gene1530	80.1	8.2e-16	Transposase	N/A
COG	UHGV-1341707_64	COG4372	N/A	N/A	N/A	N/A