UHGV-1342924 (vOTU-061590)

Viral Genome: UHGV-1342924

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1342924
vOTU ID	vOTU-061590
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_10017_NODE_226_length_41843_cov_4.525845
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.72 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9673
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.24
Jumbo phage	No

Genome content
Genome length (bp)	41,843
GC content	47.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	96%
Average CDS length (bps)	839.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1342924_4	phrog_355	73.9	1.9e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_4	UniRef90_A0A2N2CA89	101.0	1.33e-25	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-1342924_4	255431.Q6UAS4_9CAUD	86.3	1.51e-20	N/A	N/A
Pfam	UHGV-1342924_4	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1342924_4	PF14359,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_7	phrog_434	300.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_7	UniRef90_A0A1Y3S9B9	332.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1342924_7	1121344.JHZO01000003_gene985	229.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1342924_7	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1342924_7	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1342924_7	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1342924_7	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1342924_8	K07455	280.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1342924_8	phrog_148	271.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_8	UniRef90_A0A3D3Y007	360.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1342924_8	1226322.HMPREF1545_00015	337.0	0	RecT family	N/A
Pfam	UHGV-1342924_8	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1342924_8	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1342924_8	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1342924_8	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_9	phrog_4973	56.0	6.5e-16	N/A	unknown function
UniRef90	UHGV-1342924_9	UniRef90_A0A1W1YSW9	75.9	2.37e-16	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1342924_9	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1342924_9	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1342924_10	K03111	129.1	5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1342924_10	phrog_44	139.6	1.90002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_10	UniRef90_A0A373B679	135.0	5.15e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1342924_10	1391647.AVSV01000039_gene1087	134.0	1.24e-38	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1342924_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1342924_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1342924_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1342924_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1342924_10	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1342924_11	K02315	43.1	0.0000000000025	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1342924_11	phrog_5968	150.9	5.60519e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_11	UniRef90_A0A1Q9J7D4	153.0	7.84727e-43	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1342924_11	469604.HMPREF0946_01101	135.0	1.03e-36	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1342924_11	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1342924_11	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1342924_11	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_14	phrog_190	102.2	4.9e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342924_14	UniRef90_UPI001934051C	123.0	3.9e-34	N/A	N/A
eggNOG-mapper	UHGV-1342924_14	563031.HMPREF0666_01122	111.0	4e-30	N/A	N/A
Pfam	UHGV-1342924_14	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1342924_14	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_16	phrog_3136	113.9	6.4e-34	N/A	unknown function
UniRef90	UHGV-1342924_16	UniRef90_A0A3D0HBD2	99.8	2.57e-23	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1342924_16	1007096.BAGW01000031_gene120	65.9	0.000000000122	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1342924_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1342924_16	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_20	phrog_10714	60.0	3.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1342924_20	1120998.AUFC01000030_gene2222	52.0	0.000000203	N/A	N/A
KOfam	UHGV-1342924_27	K06909	102.5	5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1342924_27	phrog_979	196.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1342924_27	UniRef90_UPI001D0245C4	675.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1342924_27	748224.HMPREF9436_01395	595.0	0	Terminase-like family	N/A
Pfam	UHGV-1342924_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1342924_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1342924_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_28	phrog_156	308.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1342924_28	1410650.JHWL01000003_gene2833	619.0	0	N/A	N/A
structural_annotation	UHGV-1342924_28	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1342924_29	K07584	43.3	0.0000000000068	N/A	N/A
PHROG	UHGV-1342924_29	phrog_4478	42.5	0.0000000000075	peptidase	other
Pfam	UHGV-1342924_29	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1342924_29	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342924_29	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_30	phrog_13908	290.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1342924_30	1410650.JHWL01000003_gene2831	155.0	2.3696e-42	N/A	N/A
PHROG	UHGV-1342924_31	phrog_1357	247.2	0	major head protein	head and packaging
UniRef90	UHGV-1342924_31	UniRef90_A0A2V2GQW4	347.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1342924_31	1449126.JQKL01000003_gene1695	316.0	0	N/A	N/A
NCBIFam	UHGV-1342924_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1342924_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_32	phrog_15239	48.1	0.00000000000018	N/A	unknown function
PHROG	UHGV-1342924_33	phrog_12105	127.0	8e-38	N/A	unknown function
eggNOG-mapper	UHGV-1342924_33	1519439.JPJG01000060_gene1891	77.8	1.32e-16	N/A	N/A
PHROG	UHGV-1342924_34	phrog_511	234.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1342924_34	1410650.JHWL01000003_gene2827	353.0	0	N/A	N/A
structural_annotation	UHGV-1342924_34	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342924_35	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_36	phrog_372	211.7	0	tail protein	tail
UniRef90	UHGV-1342924_36	UniRef90_UPI001EE154D9	85.9	0.0000000000000432	N/A	N/A
COG	UHGV-1342924_36	COG4675	N/A	N/A	Phage tail collar domain	N/A
eggNOG-mapper	UHGV-1342924_37	1410650.JHWL01000003_gene2815	130.0	5.62e-32	N/A	N/A
PHROG	UHGV-1342924_39	phrog_10089	504.6	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1342924_39	748224.HMPREF9436_02860	368.0	0	N/A	N/A
Pfam	UHGV-1342924_39	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1342924_39	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
PHROG	UHGV-1342924_40	phrog_10089	976.3	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1342924_40	UniRef90_A0A3D5IBL6	716.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1342924_40	1235797.C816_04246	719.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1342924_40	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1342924_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1342924_40	COG0249	N/A	N/A	DNA mismatch repair ATPase MutS	N/A
PHROG	UHGV-1342924_41	phrog_22978	428.6	0	N/A	unknown function
UniRef90	UHGV-1342924_41	UniRef90_A0A396QCY9	286.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1342924_41	1410650.JHWL01000003_gene2814	297.0	0	N/A	N/A
PHROG	UHGV-1342924_42	phrog_16573	60.2	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1342924_42	1160721.RBI_I01572	72.4	0.0000000000284	N/A	N/A
Pfam	UHGV-1342924_42	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1342924_45	phrog_443	61.1	3e-17	holin	lysis
UniRef90	UHGV-1342924_45	UniRef90_UPI0009B98E42	94.7	3.28e-24	holin	N/A
eggNOG-mapper	UHGV-1342924_45	1469948.JPNB01000002_gene3855	88.6	1.44e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1342924_45	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1342924_45	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1342924_46	phrog_9066	49.8	0.000000000000032	endolysin	lysis
UniRef90	UHGV-1342924_46	UniRef90_R7ID00	161.0	2.10195e-44	SH3 domain protein	N/A
structural_annotation	UHGV-1342924_46	PF01551,PF08460,NF040883,COG0739,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1342924_47	K14059	150.7	1.54143e-44	int; integrase	N/A
PHROG	UHGV-1342924_47	phrog_1	156.7	0	integrase	integration and excision
UniRef90	UHGV-1342924_47	UniRef90_UPI001C124E9B	125.0	1.61e-29	site-specific integrase	N/A
eggNOG-mapper	UHGV-1342924_47	1226322.HMPREF1545_00144	90.5	1.09e-17	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1342924_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1342924_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1342924_47	PF00589,PF14659,PF12286,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A