UHGV-1343310 (vOTU-083106)

Viral Genome: UHGV-1343310

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1343310
vOTU ID	vOTU-083106
Representative Genome?	Yes
Source	GVD
Original genome ID	Minot_Diet_SRR5088935_NODE_42_length_40849_cov_17.886601
Associated BioSample	SAMN06117589
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9669
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.59
Jumbo phage	No

Genome content
Genome length (bp)	40,849
GC content	41.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	89%
Average CDS length (bps)	683.15
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1343310_1	phrog_83	105.7	3.9e-31	terminase small subunit	head and packaging
UniRef90	UHGV-1343310_1	UniRef90_A0A1C6IV70	268.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1343310_1	411459.RUMOBE_00939	223.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1343310_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1343310_1	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-1343310_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1343310_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_2	phrog_9	368.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1343310_2	UniRef90_A0A1C6IVJ8	1202.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-1343310_2	411459.RUMOBE_00938	989.0	0	N/A	N/A
Pfam	UHGV-1343310_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1343310_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1343310_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1343310_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_3	phrog_12	270.1	0	portal protein	head and packaging
UniRef90	UHGV-1343310_3	UniRef90_A0A1C6IVH0	811.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1343310_3	411459.RUMOBE_00937	580.0	0	N/A	N/A
Pfam	UHGV-1343310_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1343310_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1343310_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1343310_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_4	K01358	131.8	6.6e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1343310_4	phrog_94	214.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1343310_4	UniRef90_A0A1C6IV57	538.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1343310_4	536232.CLM_1658	274.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1343310_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1343310_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1343310_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_5	phrog_10	192.3	0	major head protein	head and packaging
UniRef90	UHGV-1343310_5	UniRef90_A0A1C6IV65	750.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-1343310_5	97139.C824_05970	443.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1343310_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1343310_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1343310_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1343310_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_6	phrog_5223	60.6	2e-17	neck protein	connector
eggNOG-mapper	UHGV-1343310_6	1235792.C808_03062	88.6	4.4e-22	N/A	N/A
structural_annotation	UHGV-1343310_6	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_7	phrog_1951	50.8	0.000000000000025	head-tail adaptor	connector
UniRef90	UHGV-1343310_7	UniRef90_A5ZPL6	102.0	3.67e-26	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-1343310_7	1235792.C808_03061	107.0	9.26e-29	N/A	N/A
structural_annotation	UHGV-1343310_7	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_8	phrog_5	51.2	0.000000000000032	tail completion or Neck1 protein	connector
UniRef90	UHGV-1343310_8	UniRef90_A0A1C6IVB7	270.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1343310_8	411459.RUMOBE_00932	65.1	0.000000000017	Phage protein, HK97 gp10 family	N/A
UniRef90	UHGV-1343310_9	UniRef90_A0A3D4X921	146.0	3.13891e-43	Phage tail protein	N/A
eggNOG-mapper	UHGV-1343310_9	97139.C824_05966	104.0	1.75e-27	N/A	N/A
structural_annotation	UHGV-1343310_9	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_10	phrog_88	82.9	1.4e-24	major tail protein	tail
UniRef90	UHGV-1343310_10	UniRef90_A0A1C6IVD8	382.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1343310_10	411459.RUMOBE_00930	105.0	5.15e-26	N/A	N/A
NCBIFam	UHGV-1343310_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1343310_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1343310_11	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_13	K20478	93.0	2.2e-28	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1343310_13	phrog_1533	322.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1343310_13	UniRef90_UPI0018AB1AB9	2845.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1343310_13	1235794.C811_01380	333.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1343310_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1343310_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1343310_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1343310_14	phrog_33	62.7	8.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-1343310_14	UniRef90_A0A1C6IW65	452.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1343310_14	457396.CSBG_01058	146.0	1.4e-40	phage tail	N/A
COG	UHGV-1343310_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1343310_14	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1343310_15	PF07761	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_16	K16628	85.6	1.5e-25	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1343310_16	phrog_18110	343.6	0	N/A	unknown function
UniRef90	UHGV-1343310_16	UniRef90_A0A1C6KA93	1945.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1343310_16	411459.RUMOBE_00923	330.0	0	N/A	N/A
Pfam	UHGV-1343310_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1343310_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-1343310_16	PF04917	N/A	N/A	Bacterial shufflon protein, N-terminal constant region	Shufflon_N
Pfam	UHGV-1343310_16	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1343310_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1343310_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1343310_16	PF06605,PF20086,PF18099,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_17	phrog_2566	70.4	2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1343310_17	1139219.I569_00244	57.0	0.0000000014	N/A	N/A
PHROG	UHGV-1343310_18	phrog_199	69.7	3.4e-20	holin	lysis
UniRef90	UHGV-1343310_18	UniRef90_A0A417CRV5	283.0	0	Holin	N/A
eggNOG-mapper	UHGV-1343310_18	411460.RUMTOR_02100	224.0	0	N/A	N/A
Pfam	UHGV-1343310_18	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1343310_18	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1343310_18	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_19	K01448	59.3	1.4e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1343310_19	phrog_435	147.2	1.09301e-43	endolysin	lysis
UniRef90	UHGV-1343310_19	UniRef90_A0A1C6J814	413.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1343310_19	1204534.J9QE22_9CAUD	157.0	4.90454e-44	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1343310_19	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1343310_19	PF05036	N/A	N/A	SPOR domain	SPOR
structural_annotation	UHGV-1343310_19	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_20	K14059	150.1	2.66247e-44	int; integrase	N/A
PHROG	UHGV-1343310_20	phrog_1	170.2	0	integrase	integration and excision
UniRef90	UHGV-1343310_20	UniRef90_A0A1C6H8L7	716.0	0	Site-specific tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1343310_20	1235792.C808_01553	451.0	0	Phage integrase family	N/A
Pfam	UHGV-1343310_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1343310_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1343310_20	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_21	phrog_15412	74.4	1.3e-21	N/A	unknown function
UniRef90	UHGV-1343310_21	UniRef90_A0A416SJX2	320.0	0	YbjQ family protein	N/A
eggNOG-mapper	UHGV-1343310_21	658659.HMPREF0983_03993	103.0	1.06e-24	Putative heavy-metal-binding	N/A
Pfam	UHGV-1343310_21	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-1343310_21	COG0393	N/A	N/A	N/A	N/A
HAMAP	UHGV-1343310_21	MF_00338	N/A	N/A	UPF0145 protein YbjQ [ybjQ]	N/A
KOfam	UHGV-1343310_23	K22300	63.4	4.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1343310_23	phrog_4	49.5	0.000000000000098	transcriptional repressor	transcription regulation
UniRef90	UHGV-1343310_23	UniRef90_A0A417CPK6	206.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1343310_23	97139.C824_05937	88.2	1.21e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1343310_23	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1343310_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1343310_23	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_31	phrog_6058	64.0	1.6e-18	N/A	unknown function
UniRef90	UHGV-1343310_31	UniRef90_A0A0U9H7T0	63.9	0.0000000000062	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1343310_31	411468.CLOSCI_01465	103.0	1.64e-28	N/A	N/A
structural_annotation	UHGV-1343310_31	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_32	phrog_3584	147.6	7.14662e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1343310_32	1280698.AUJS01000007_gene1013	305.0	0	N/A	N/A
structural_annotation	UHGV-1343310_32	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343310_33	UniRef90_A0A1C6IUE3	221.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1343310_33	411461.DORFOR_01140	88.2	2.21e-20	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1343310_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1343310_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1343310_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_35	K03496	186.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1343310_35	phrog_164	150.8	8.40779e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1343310_35	UniRef90_UPI001C00DAF9	531.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1343310_35	97139.C824_00725	243.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1343310_35	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1343310_35	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1343310_35	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1343310_36	K03497	48.3	0.000000000000036	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1343310_36	phrog_15077	169.4	0	N/A	unknown function
UniRef90	UHGV-1343310_36	UniRef90_UPI0018AA1051	1576.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1343310_36	742765.HMPREF9457_02110	196.0	0	N/A	N/A
Pfam	UHGV-1343310_36	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-1343310_36	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343310_41	UniRef90_UPI001C00FD03	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1343310_41	1256908.HMPREF0373_00667	115.0	6.5e-32	N/A	N/A
Pfam	UHGV-1343310_41	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1343310_42	K03427	160.0	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1343310_42	phrog_6380	409.0	0	DNA methyltransferase	other
UniRef90	UHGV-1343310_42	UniRef90_A0A2V2D6Q6	975.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1343310_42	1444306.JFZC01000034_gene2643	402.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1343310_42	MTase_I_00005	113.4	1.2e-33	Type I methyltransferase	RM
Pfam	UHGV-1343310_42	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1343310_42	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1343310_42	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_43	phrog_20593	89.2	2.8e-26	N/A	unknown function
UniRef90	UHGV-1343310_43	UniRef90_UPI001C00A328	85.5	8.51e-19	N/A	N/A
eggNOG-mapper	UHGV-1343310_43	483218.BACPEC_01161	65.5	0.0000000000427	N/A	N/A
KOfam	UHGV-1343310_46	K03111	130.4	2.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1343310_46	phrog_44	135.8	2.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1343310_46	UniRef90_A0A1C6IVA5	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1343310_46	411459.RUMOBE_00993	209.0	0	N/A	N/A
Pfam	UHGV-1343310_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1343310_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1343310_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1343310_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1343310_46	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_51	phrog_19011	59.4	4e-17	N/A	unknown function
structural_annotation	UHGV-1343310_51	PF17516,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_52	phrog_36	60.7	2.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1343310_52	UniRef90_R6ZAS5	151.0	6.02558e-44	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-1343310_52	476272.RUMHYD_02841	192.0	0	N/A	N/A
structural_annotation	UHGV-1343310_52	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1343310_53	phrog_144	61.4	1.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1343310_53	UniRef90_A0A1C6IUY5	229.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1343310_53	411459.RUMOBE_00940	124.0	1.38e-34	HNH endonuclease	N/A
Pfam	UHGV-1343310_53	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1343310_53	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A