UHGV-1343960 (vOTU-012474)

Viral Genome: UHGV-1343960

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1343960
vOTU ID	vOTU-012474
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR413562_NODE_814_length_26063_cov_3.540103
Associated BioSample	SAMN00791907
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.29
Jumbo phage	No

Genome content
Genome length (bp)	26,063
GC content	38.74%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	94%
Average CDS length (bps)	680.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1343960_2	UniRef90_A0A374N9Y2	319.0	0	N/A	N/A
Pfam	UHGV-1343960_2	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1343960_2	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_3	phrog_1067	140.4	1.10002e-41	minor head protein	head and packaging
UniRef90	UHGV-1343960_3	UniRef90_A0A348ZBV6	178.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1343960_3	1160721.RBI_I01574	125.0	3e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1343960_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1343960_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1343960_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1343960_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_4	UniRef90_A0A1G5CPA2	122.0	2.54e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-1343960_4	1246.JMEA01000006_gene51	69.7	0.000000000024	phage tail	N/A
COG	UHGV-1343960_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1343960_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_5	phrog_23464	256.5	0	N/A	unknown function
UniRef90	UHGV-1343960_5	UniRef90_A0A1C6JGQ9	181.0	1.4013e-45	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1343960_5	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1343960_5	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1343960_5	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_7	phrog_1021	43.7	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-1343960_7	1321778.HMPREF1982_03556	52.4	0.000000521	N/A	N/A
PHROG	UHGV-1343960_8	phrog_885	135.2	4.3e-40	major tail protein	tail
UniRef90	UHGV-1343960_8	UniRef90_Q894J4	163.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-1343960_8	1321814.HMPREF9089_00935	175.0	0	N/A	N/A
structural_annotation	UHGV-1343960_8	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1343960_9	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_10	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1343960_10	642492.Clole_0747	134.0	2.5e-38	N/A	N/A
structural_annotation	UHGV-1343960_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_11	phrog_1951	96.3	2e-28	head-tail adaptor	connector
UniRef90	UHGV-1343960_11	UniRef90_A0A373XMG4	218.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1343960_11	1536769.P40081_01090	67.8	0.000000000000282	head-tail adaptor	N/A
COG	UHGV-1343960_11	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1343960_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_12	phrog_5223	55.1	0.0000000000000011	neck protein	connector
UniRef90	UHGV-1343960_12	UniRef90_A0A174XIL0	94.7	2.44e-23	N/A	N/A
eggNOG-mapper	UHGV-1343960_12	411468.CLOSCI_00547	92.0	4.74e-23	N/A	N/A
PHROG	UHGV-1343960_13	phrog_10	129.1	4.7e-38	major head protein	head and packaging
UniRef90	UHGV-1343960_13	UniRef90_A0A373XLR3	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1343960_13	411468.CLOSCI_00548	376.0	0	Phage capsid family	N/A
Pfam	UHGV-1343960_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1343960_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1343960_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1343960_14	K01358	150.8	1.26117e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1343960_14	phrog_94	239.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1343960_14	UniRef90_A0A373XPG0	462.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1343960_14	1382358.JHVN01000024_gene1706	251.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-1343960_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1343960_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1343960_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_15	phrog_12	43.1	0.0000000000043	portal protein	head and packaging
UniRef90	UHGV-1343960_15	UniRef90_UPI00189D1C0C	61.2	0.000000000527	phage portal protein	N/A
eggNOG-mapper	UHGV-1343960_15	411468.CLOSCI_00550	120.0	3.83e-31	Phage portal protein	N/A
COG	UHGV-1343960_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-1343960_16	phrog_12	115.2	4.9e-34	portal protein	head and packaging
UniRef90	UHGV-1343960_16	UniRef90_A0A373XNZ6	580.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1343960_16	411468.CLOSCI_00550	278.0	0	Phage portal protein	N/A
Pfam	UHGV-1343960_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1343960_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1343960_16	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_17	phrog_9	312.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1343960_17	UniRef90_A0A373XNY0	1053.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1343960_17	411468.CLOSCI_00551	681.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1343960_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1343960_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1343960_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1343960_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_19	phrog_119	72.2	8.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1343960_19	UniRef90_A0A373XNZ9	234.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1343960_19	500633.CLOHIR_00362	119.0	8.27e-34	HNH endonuclease	N/A
Pfam	UHGV-1343960_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1343960_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1343960_20	394503.Ccel_3053	55.5	0.0000000703	N/A	N/A
structural_annotation	UHGV-1343960_20	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_21	phrog_3584	146.0	2.70451e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1343960_21	1235800.C819_00515	68.9	0.0000000000476	N/A	N/A
structural_annotation	UHGV-1343960_21	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_25	phrog_15609	98.2	9.3e-29	N/A	unknown function
UniRef90	UHGV-1343960_25	UniRef90_A0A373SLQ6	155.0	3.72003e-41	N/A	N/A
eggNOG-mapper	UHGV-1343960_25	641112.ACOK01000073_gene2872	111.0	5.96e-26	N/A	N/A
structural_annotation	UHGV-1343960_25	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_26	phrog_8470	211.9	0	N/A	unknown function
UniRef90	UHGV-1343960_26	UniRef90_UPI0018E45158	132.0	1.03e-29	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1343960_26	641112.ACOK01000073_gene2870	110.0	2.95e-23	PcfJ-like protein	N/A
Pfam	UHGV-1343960_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1343960_26	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_29	UniRef90_A0A2N0ULT9	136.0	5.99994e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-1343960_29	1283300.ATXB01000001_gene1737	45.8	0.0000097	DNA excision	N/A
Pfam	UHGV-1343960_29	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1343960_29	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1343960_29	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-1343960_29	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_30	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1343960_30	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1343960_30	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_31	UniRef90_A0A373XLN2	275.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1343960_31	1235793.C809_00679	98.6	8.26e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1343960_31	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1343960_31	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1343960_32	phrog_1914	146.8	1.30321e-43	N/A	unknown function
UniRef90	UHGV-1343960_32	UniRef90_A0A374NDM7	350.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1343960_32	1160721.RBI_I01604	165.0	0	N/A	N/A
Pfam	UHGV-1343960_32	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1343960_32	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1343960_32	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_33	UniRef90_A0A374DTF3	103.0	2.88e-25	N/A	N/A
KOfam	UHGV-1343960_34	K14059	218.1	0	int; integrase	N/A
PHROG	UHGV-1343960_34	phrog_1	207.2	0	integrase	integration and excision
UniRef90	UHGV-1343960_34	UniRef90_A0A373XME4	772.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1343960_34	428125.CLOLEP_02743	301.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1343960_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1343960_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1343960_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1343960_35	UniRef90_A0A373KYN1	1590.0	0	SIR2_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1343960_35	1158608.I583_02503	609.0	0	SIR2-like domain	N/A
PADLOC	UHGV-1343960_35	Avs5_00001	200.0	0	NA	AVAST
Pfam	UHGV-1343960_35	PF13289	N/A	N/A	SIR2-like domain	SIR2_2