UHGV-1344311 (vOTU-006910)

Viral Genome: UHGV-1344311

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1344311
vOTU ID	vOTU-006910
Representative Genome?	Yes
Source	GVD
Original genome ID	Monaco_MBA4028_NODE_5_length_43424_cov_61.498351
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9829
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.24
Jumbo phage	No

Genome content
Genome length (bp)	43,369
GC content	56.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	92%
Average CDS length (bps)	587.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1344311_1	1519439.JPJG01000011_gene53	179.0	3.38974e-42	N/A	N/A
eggNOG-mapper	UHGV-1344311_2	1410650.JHWL01000003_gene2815	57.0	0.00000315	N/A	N/A
UniRef90	UHGV-1344311_3	UniRef90_A0A8D9UGT1	94.7	1.5e-22	Sigma C capsid protein	N/A
PHROG	UHGV-1344311_4	phrog_511	217.6	0	internal virion protein	head and packaging
UniRef90	UHGV-1344311_4	UniRef90_A0A8D9UH72	803.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1344311_4	1226322.HMPREF1545_00785	322.0	0	N/A	N/A
structural_annotation	UHGV-1344311_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_5	phrog_12105	91.1	4.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1344311_5	1519439.JPJG01000060_gene1891	58.9	0.00000000154	N/A	N/A
KOfam	UHGV-1344311_6	K22519	42.2	0.000000000011	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-1344311_6	phrog_9589	80.4	1.8e-29	endolysin	lysis
UniRef90	UHGV-1344311_6	UniRef90_UPI000A02B331	155.0	1.97023e-42	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1344311_6	476272.RUMHYD_02876	164.0	1.13505e-43	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1344311_6	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1344311_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1344311_6	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1344311_6	PF01471,PF06940,TIGR02594,NF038080,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_7	phrog_881	92.4	2.1e-27	holin	lysis
UniRef90	UHGV-1344311_7	UniRef90_UPI00189D3A4F	88.6	9.68e-22	phage holin	N/A
eggNOG-mapper	UHGV-1344311_7	742740.HMPREF9474_02251	83.6	1.73e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-1344311_7	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1344311_7	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_8	phrog_4105	100.6	9.5e-30	N/A	unknown function
UniRef90	UHGV-1344311_8	UniRef90_A0A8D9UHA9	142.0	3.89981e-42	Holin protein	N/A
eggNOG-mapper	UHGV-1344311_8	742740.HMPREF9474_02252	120.0	5.79e-34	N/A	N/A
eggNOG-mapper	UHGV-1344311_9	1408437.JNJN01000002_gene1389	65.1	0.0000000113	N/A	N/A
Pfam	UHGV-1344311_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1344311_9	PF04862,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_10	phrog_366	42.1	0.000000000011	tail fiber protein	tail
Pfam	UHGV-1344311_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1344311_10	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_11	phrog_15239	88.3	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1344311_11	1449126.JQKL01000003_gene1694	51.6	0.00000193	N/A	N/A
PHROG	UHGV-1344311_12	phrog_1357	260.3	0	major head protein	head and packaging
UniRef90	UHGV-1344311_12	UniRef90_A0A8D9UH64	730.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1344311_12	1449126.JQKL01000003_gene1695	441.0	0	N/A	N/A
Pfam	UHGV-1344311_12	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1344311_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1344311_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_13	phrog_13908	300.3	0	N/A	unknown function
UniRef90	UHGV-1344311_13	UniRef90_A0A844DRV7	114.0	6e-25	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1344311_13	1410650.JHWL01000003_gene2831	118.0	3.83e-28	N/A	N/A
UniRef90	UHGV-1344311_14	UniRef90_A0A8D9PDR6	164.0	0	YsxB-like protein	N/A
Pfam	UHGV-1344311_14	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1344311_14	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_15	phrog_156	332.9	0	portal protein	head and packaging
UniRef90	UHGV-1344311_15	UniRef90_A0A8D9UH10	1132.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1344311_15	748224.HMPREF9436_01396	531.0	0	N/A	N/A
structural_annotation	UHGV-1344311_15	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1344311_16	K06909	121.2	1.1e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1344311_16	phrog_979	197.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1344311_16	UniRef90_A0A8D9PDR5	945.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1344311_16	657322.FPR_02290	607.0	0	Terminase-like family	N/A
Pfam	UHGV-1344311_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1344311_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1344311_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_17	UniRef90_A0A8D9PDT2	177.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1344311_17	1226322.HMPREF1545_00042	141.0	1.51999e-41	N/A	N/A
structural_annotation	UHGV-1344311_17	PF04218,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-1344311_20	K07726	40.4	0.000000000052	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-1344311_20	phrog_25567	59.3	5.5e-17	N/A	unknown function
UniRef90	UHGV-1344311_20	UniRef90_UPI00164AED9E	132.0	9.08e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1344311_20	1235798.C817_04600	94.0	3.17e-23	N/A	N/A
Pfam	UHGV-1344311_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1344311_20	NF040522,COG2944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344311_21	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344311_22	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_25	UniRef90_A0A098GES5	89.0	4.8e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-1344311_25	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-1344311_29	K05925	63.0	3.7e-18	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1344311_29	phrog_359	215.5	0	DNA methyltransferase	other
UniRef90	UHGV-1344311_29	UniRef90_A0A3D1PJR7	293.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1344311_29	400682.PAC_15710341	205.0	0	primary miRNA methylation	N/A
PADLOC	UHGV-1344311_29	MTase_II_00048	214.2	0	Type II methyltransferase	RM
Pfam	UHGV-1344311_29	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1344311_29	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1344311_29	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_30	UniRef90_A0A8D9PDK1	89.4	1.49e-20	Anti-repressor	N/A
PHROG	UHGV-1344311_32	phrog_954	201.8	0	DNA methyltransferase	other
UniRef90	UHGV-1344311_32	UniRef90_A0A810Q0N4	356.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1344311_32	1280698.AUJS01000007_gene1028	276.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1344311_32	MTase_II_00074	202.8	0	Type II methyltransferase	RM
Pfam	UHGV-1344311_32	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1344311_32	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1344311_32	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_35	phrog_190	110.1	1.8e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344311_35	UniRef90_A0A8D9PDD6	260.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1344311_35	1226322.HMPREF1545_00295	117.0	1.28e-31	N/A	N/A
Pfam	UHGV-1344311_35	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1344311_35	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_37	phrog_9804	64.2	2.1e-18	N/A	unknown function
UniRef90	UHGV-1344311_37	UniRef90_A0A8D9PDS1	178.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1344311_37	1121344.JHZO01000003_gene981	88.2	5.12e-20	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1344311_37	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1344311_37	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_38	phrog_15768	82.8	4e-25	N/A	unknown function
UniRef90	UHGV-1344311_38	UniRef90_A0A8D9PDU3	119.0	7.42e-30	N/A	N/A
eggNOG-mapper	UHGV-1344311_38	445970.ALIPUT_02689	83.2	1.55e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-1344311_38	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1344311_38	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1344311_38	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1344311_41	K03111	146.3	3.19496e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1344311_41	phrog_44	145.6	2.90069e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344311_41	UniRef90_A0A352RPR0	201.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1344311_41	1007096.BAGW01000023_gene151	198.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1344311_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1344311_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1344311_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1344311_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1344311_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_42	phrog_7566	95.5	3.4e-28	N/A	unknown function
UniRef90	UHGV-1344311_42	UniRef90_A0A8D9UHC0	182.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1344311_42	693746.OBV_24070	121.0	1.56e-34	N/A	N/A
PHROG	UHGV-1344311_43	phrog_72	42.5	0.0000000000051	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344311_43	UniRef90_A0A8D9PDS2	316.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1344311_43	445972.ANACOL_01825	130.0	5.71e-36	N/A	N/A
structural_annotation	UHGV-1344311_43	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_44	UniRef90_B0PAM4	157.0	1.4013e-45	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1344311_44	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_45	UniRef90_A0A845QLQ8	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-1344311_45	33035.JPJF01000135_gene5082	114.0	5.68e-29	N/A	N/A
Pfam	UHGV-1344311_45	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1344311_45	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_47	UniRef90_A0A8D9UH91	272.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1344311_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1344311_47	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_49	phrog_22529	47.2	0.00000000000029	N/A	unknown function
UniRef90	UHGV-1344311_49	UniRef90_A0A8D9UHA1	213.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-1344311_49	742733.HMPREF9469_00853	63.9	0.00000000025	3D domain	N/A
Pfam	UHGV-1344311_49	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1344311_49	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1344311_49	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_51	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
UniRef90	UHGV-1344311_53	UniRef90_A0A8D9PDN2	130.0	2.21e-38	DNA-binding protein	N/A
structural_annotation	UHGV-1344311_53	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_55	phrog_8	45.6	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1344311_55	UniRef90_A0A8D9UHB1	200.0	0	Repressor protein CI	N/A
eggNOG-mapper	UHGV-1344311_55	1297617.JPJD01000059_gene2644	58.9	0.00000000189	addiction module antidote protein HigA	N/A
Pfam	UHGV-1344311_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1344311_55	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1344311_55	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_57	UniRef90_A0A8D9UHA6	82.8	4.14e-17	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1344311_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1344311_57	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1344311_58	K14059	154.8	1.4013e-45	int; integrase	N/A
PHROG	UHGV-1344311_58	phrog_1	166.0	0	integrase	integration and excision
UniRef90	UHGV-1344311_58	UniRef90_A0A8D9UGU2	650.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1344311_58	693746.OBV_41260	295.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1344311_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1344311_58	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1344311_58	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344311_59	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_60	phrog_20016	204.9	0	N/A	unknown function
UniRef90	UHGV-1344311_60	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1344311_60	397290.C810_05214	171.0	0	N/A	N/A
structural_annotation	UHGV-1344311_60	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_61	phrog_16490	138.2	2.79993e-41	N/A	unknown function
eggNOG-mapper	UHGV-1344311_61	1408437.JNJN01000043_gene803	140.0	2.01e-38	N/A	N/A
PHROG	UHGV-1344311_62	phrog_22984	82.8	3.4e-24	N/A	unknown function
PHROG	UHGV-1344311_63	phrog_21718	84.8	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1344311_63	397290.C810_05210	68.9	0.0000000000013	N/A	N/A
PHROG	UHGV-1344311_64	phrog_3754	92.5	4.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1344311_64	476272.RUMHYD_01764	160.0	0	N/A	N/A
KOfam	UHGV-1344311_65	K07741	67.7	3.9e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-1344311_65	phrog_130	229.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1344311_65	UniRef90_A0A6N2R468	346.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1344311_65	1289596.M1PKL6_9CAUD	261.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1344311_65	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1344311_65	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1344311_65	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344311_67	UniRef90_UPI0013798457	65.5	0.000000000000601	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-1344311_67	1235793.C809_02220	70.5	0.00000000000000105	N/A	N/A
structural_annotation	UHGV-1344311_67	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1344311_68	phrog_22978	818.4	0	N/A	unknown function
UniRef90	UHGV-1344311_68	UniRef90_A0A352SFR2	127.0	6.29e-26	MuF_C domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1344311_68	1410650.JHWL01000003_gene2814	275.0	0	N/A	N/A