UHGV-1344727 (vOTU-121246)

Viral Genome: UHGV-1344727

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1344727
vOTU ID	vOTU-121246
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_10010_NODE_461_length_33300_cov_3.990796
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.97
Jumbo phage	No

Genome content
Genome length (bp)	33,300
GC content	47.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	90%
Average CDS length (bps)	553.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1344727_4	phrog_10091	110.7	9.4e-33	holin	lysis
UniRef90	UHGV-1344727_4	UniRef90_A0A1Y4RHF4	130.0	7.54e-38	Phage holin	N/A
eggNOG-mapper	UHGV-1344727_4	445975.COLSTE_02144	114.0	2.25e-32	Bacteriophage holin	N/A
Pfam	UHGV-1344727_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1344727_4	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1344727_4	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344727_4	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_5	phrog_1863	66.8	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1344727_5	748224.HMPREF9436_01412	93.2	4.35e-24	N/A	N/A
PHROG	UHGV-1344727_6	phrog_21357	55.7	5.2e-16	endolysin	lysis
UniRef90	UHGV-1344727_6	UniRef90_A0A417S7C3	77.0	0.000000000000248	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1344727_6	1256908.HMPREF0373_02175	70.1	0.0000000000512	CHAP domain	N/A
Pfam	UHGV-1344727_6	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1344727_6	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1344727_6	TIGR02594,COG3738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344727_7	UniRef90_R6I1X1	189.0	0	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-1344727_7	552398.HMPREF0866_01159	105.0	1.08e-26	N/A	N/A
PHROG	UHGV-1344727_9	phrog_29409	170.4	0	N/A	unknown function
UniRef90	UHGV-1344727_9	UniRef90_UPI001C128253	162.0	0	isoaspartyl peptidase	N/A
PHROG	UHGV-1344727_10	phrog_37900	80.1	3e-34	N/A	unknown function
UniRef90	UHGV-1344727_10	UniRef90_A0A1Y4A3Q6	79.0	0.000000000000723	N/A	N/A
eggNOG-mapper	UHGV-1344727_10	552398.HMPREF0866_03098	114.0	6.29e-25	N/A	N/A
COG	UHGV-1344727_10	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1344727_10	PF19789,PF00041,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_12	phrog_18725	53.0	7.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1344727_12	1226322.HMPREF1545_00062	107.0	7.93e-27	N/A	N/A
PHROG	UHGV-1344727_13	phrog_13879	269.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1344727_13	665956.HMPREF1032_03630	211.0	0	N/A	N/A
structural_annotation	UHGV-1344727_13	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_14	phrog_1194	94.9	6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1344727_14	742740.HMPREF9474_03515	137.0	3.59e-40	N/A	N/A
structural_annotation	UHGV-1344727_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344727_15	428127.EUBDOL_01563	76.3	0.00000000000015	homoserine transmembrane transporter activity	N/A
COG	UHGV-1344727_15	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1344727_16	phrog_1535	163.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1344727_16	1121866.AUGK01000003_gene1437	275.0	0	phage tail tape measure protein	N/A
COG	UHGV-1344727_16	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-1344727_16	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344727_18	1121333.JMLH01000047_gene1011	75.9	0.00000000000000128	N/A	N/A
UniRef90	UHGV-1344727_19	UniRef90_UPI00164D364F	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-1344727_19	469596.HMPREF9488_01311	92.0	1.07e-22	N/A	N/A
Pfam	UHGV-1344727_19	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1344727_19	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_20	phrog_158	57.0	3.7e-16	major tail protein	tail
UniRef90	UHGV-1344727_20	UniRef90_UPI00164D954A	252.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1344727_20	1232453.BAIF02000058_gene1634	101.0	1.57e-25	N/A	N/A
Pfam	UHGV-1344727_20	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1344727_20	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344727_21	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_24	phrog_132	43.5	0.0000000000045	head-tail adaptor	connector
UniRef90	UHGV-1344727_24	UniRef90_UPI00164E20D5	153.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1344727_24	1298920.KI911353_gene2658	64.7	0.0000000000044	N/A	N/A
Pfam	UHGV-1344727_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1344727_24	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_25	phrog_1328	126.7	1.4e-37	major head protein	head and packaging
UniRef90	UHGV-1344727_25	UniRef90_UPI00164DD2D5	598.0	0	N/A	N/A
eggNOG-mapper	UHGV-1344727_25	665956.HMPREF1032_03619	238.0	0	N/A	N/A
Pfam	UHGV-1344727_25	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1344727_25	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_27	phrog_64	211.6	0	portal protein	head and packaging
UniRef90	UHGV-1344727_27	UniRef90_UPI001C02F349	768.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1344727_27	1123263.AUKY01000015_gene1609	426.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1344727_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1344727_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_28	phrog_38	180.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1344727_28	UniRef90_A0A810QA10	649.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1344727_28	1298920.KI911353_gene2682	461.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1344727_28	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1344727_28	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344727_28	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_29	phrog_1233	58.5	1.4e-16	N/A	unknown function
UniRef90	UHGV-1344727_29	UniRef90_UPI001C39EFB9	95.9	2.06e-23	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1344727_29	1232453.BAIF02000011_gene3355	87.4	7.62e-21	N/A	N/A
KOfam	UHGV-1344727_30	K06400	207.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1344727_30	phrog_95	204.9	0	integrase	integration and excision
UniRef90	UHGV-1344727_30	UniRef90_A0A3D4G6V8	272.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1344727_30	697329.Rumal_3466	234.0	0	resolvase	N/A
Pfam	UHGV-1344727_30	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1344727_30	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1344727_30	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1344727_30	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_33	phrog_606	47.2	0.00000000000017	terminase small subunit	head and packaging
UniRef90	UHGV-1344727_33	UniRef90_UPI001D08D6B6	264.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1344727_33	1280663.ATVR01000009_gene2143	70.5	0.00000000000132	N/A	N/A
Pfam	UHGV-1344727_33	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1344727_33	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_35	phrog_256	328.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344727_35	UniRef90_A0A1V5XFC1	570.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1344727_35	1235793.C809_02292	245.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1344727_35	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1344727_35	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1344727_35	PF05272,MF_00016,NF005477,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1344727_36	K02316	67.8	1.7e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1344727_36	phrog_11992	107.7	1.3e-31	N/A	unknown function
UniRef90	UHGV-1344727_36	UniRef90_G9RN79	99.8	6.68e-23	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1344727_36	665956.HMPREF1032_01698	99.8	1.12e-23	CHC2 zinc finger	N/A
PADLOC	UHGV-1344727_36	drt-cluster192	46.1	0.0000000000011	DRT	DRT
Pfam	UHGV-1344727_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1344727_36	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1344727_36	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_37	phrog_3490	113.3	1.9e-33	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344727_37	UniRef90_R6N0P8	216.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1344727_37	1304866.K413DRAFT_0825	167.0	0	resolution of meiotic recombination intermediates	N/A
Pfam	UHGV-1344727_37	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1344727_37	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1344727_37	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_38	phrog_18107	67.0	3.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1344727_38	476272.RUMHYD_02831	169.0	0	N/A	N/A
structural_annotation	UHGV-1344727_38	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_40	phrog_2872	220.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344727_40	UniRef90_A0A8J6P193	270.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1344727_40	1449050.JNLE01000005_gene3946	220.0	0	AAA domain	N/A
Pfam	UHGV-1344727_40	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1344727_40	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344727_41	PF14634	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_43	phrog_18716	139.4	9.4994e-42	N/A	unknown function
UniRef90	UHGV-1344727_43	UniRef90_A0A7X9BQA3	139.0	1.95e-40	N/A	N/A
eggNOG-mapper	UHGV-1344727_43	665959.HMPREF1013_00856	111.0	2.25e-30	N/A	N/A
Pfam	UHGV-1344727_43	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1344727_43	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_44	phrog_59	124.5	5.2e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344727_44	UniRef90_A0A1E5TU95	117.0	5.32e-30	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1344727_44	69328.PVLB_09320	106.0	4.46e-26	HNH endonuclease domain protein	N/A
PADLOC	UHGV-1344727_44	HEase_00016	95.4	1.1e-27	homing endonuclease	RM
Pfam	UHGV-1344727_44	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1344727_44	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1344727_44	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
Pfam	UHGV-1344727_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1344727_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1344727_48	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1344727_50	phrog_10714	47.6	0.0000000000003	N/A	unknown function
UniRef90	UHGV-1344727_53	UniRef90_A0A8D9PDT5	72.0	0.0000000000000665	Hydrogenase/urease nickel incorporation protein	N/A