UHGV-1344782 (vOTU-076074)

Viral Genome: UHGV-1344782

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1344782
vOTU ID	vOTU-076074
Representative Genome?	Yes
Source	GVD
Original genome ID	Ma_2019_SRR413724_NODE_479_length_37242_cov_5.281550
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.33
Jumbo phage	No

Genome content
Genome length (bp)	37,242
GC content	55.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	93%
Average CDS length (bps)	518.10
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1344782_1	phrog_1066	128.3	2.9e-38	N/A	unknown function
eggNOG-mapper	UHGV-1344782_1	1382358.JHVN01000024_gene1703	127.0	2.05e-36	N/A	N/A
structural_annotation	UHGV-1344782_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_2	phrog_9	373.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1344782_2	UniRef90_A0A1Y3W5R1	780.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1344782_2	1203606.HMPREF1526_00981	725.0	0	Terminase	N/A
Pfam	UHGV-1344782_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1344782_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1344782_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1344782_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_3	phrog_12	171.6	0	portal protein	head and packaging
UniRef90	UHGV-1344782_3	UniRef90_UPI001898FCCE	501.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1344782_3	626523.GCWU000342_01027	498.0	0	Portal protein	N/A
Pfam	UHGV-1344782_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1344782_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1344782_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1344782_4	K01358	128.0	1.2e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1344782_4	phrog_94	200.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1344782_4	UniRef90_A0A355BJ21	209.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1344782_4	1280689.AUJC01000011_gene1520	192.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1344782_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1344782_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1344782_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_5	phrog_10	184.3	0	major head protein	head and packaging
UniRef90	UHGV-1344782_5	UniRef90_UPI00189AE5FE	419.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1344782_5	1280689.AUJC01000011_gene1521	390.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1344782_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1344782_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1344782_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1344782_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_6	phrog_5223	44.3	0.0000000000024	neck protein	connector
UniRef90	UHGV-1344782_6	UniRef90_A0A6N8H2B4	53.9	0.000000241	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1344782_6	931626.Awo_c31020	50.4	0.000000924	N/A	N/A
PHROG	UHGV-1344782_7	phrog_1951	76.5	2.5e-22	head-tail adaptor	connector
UniRef90	UHGV-1344782_7	UniRef90_A0A1F8UNT5	64.7	0.0000000000174	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1344782_7	1094508.Tsac_2422	53.9	0.0000000568	Phage head-tail joining protein	N/A
Pfam	UHGV-1344782_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1344782_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1344782_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1344782_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344782_8	1487921.DP68_11350	58.9	0.000000000787	N/A	N/A
structural_annotation	UHGV-1344782_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_9	phrog_5	40.8	0.000000000052	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1344782_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_10	phrog_88	82.5	5.2e-24	major tail protein	tail
UniRef90	UHGV-1344782_10	UniRef90_S0FUN2	109.0	8.29e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1344782_10	1195236.CTER_5106	109.0	1.39e-27	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1344782_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1344782_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_12	phrog_33680	111.0	8.9e-33	N/A	unknown function
UniRef90	UHGV-1344782_12	UniRef90_A0A1F8V6X7	197.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1344782_12	498761.HM1_2969	180.0	7.00649e-45	nuclear chromosome segregation	N/A
Pfam	UHGV-1344782_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1344782_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1344782_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_13	phrog_37549	43.8	0.00000000000025	virion structural protein	head and packaging
UniRef90	UHGV-1344782_13	UniRef90_A0A3D0W045	220.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1344782_13	1195236.CTER_5103	111.0	1.13e-22	N/A	N/A
structural_annotation	UHGV-1344782_13	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_14	phrog_26795	89.2	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1344782_14	997296.PB1_16154	132.0	8.68e-33	N/A	N/A
structural_annotation	UHGV-1344782_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_15	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_16	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_18	phrog_19111	44.9	0.00000000000083	N/A	unknown function
eggNOG-mapper	UHGV-1344782_18	1232428.CAVO010000002_gene2342	66.2	0.000000000572	ATPase involved in DNA repair	N/A
COG	UHGV-1344782_18	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
UniRef90	UHGV-1344782_19	UniRef90_A0A411ZUM8	183.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-1344782_19	471875.RUMLAC_02240	140.0	5.29e-34	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-1344782_19	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1344782_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_19	PF13306,NF041351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344782_21	411471.SUBVAR_06976	52.4	0.00000126	N/A	N/A
structural_annotation	UHGV-1344782_21	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_24	phrog_1454	42.6	0.0000000000094	N/A	unknown function
PHROG	UHGV-1344782_25	phrog_13256	65.1	6.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1344782_25	1226322.HMPREF1545_00166	68.2	0.0000000000000396	N/A	N/A
UniRef90	UHGV-1344782_26	UniRef90_H1CEM5	216.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1344782_26	525254.HMPREF0072_1273	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-1344782_26	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1344782_26	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_27	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344782_28	1160721.RBI_I00206	52.0	0.000000518	N/A	N/A
PHROG	UHGV-1344782_31	phrog_16490	53.5	0.0000000000000051	N/A	unknown function
eggNOG-mapper	UHGV-1344782_31	641112.ACOK01000103_gene525	55.5	0.000000804	N/A	N/A
structural_annotation	UHGV-1344782_32	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1344782_33	UniRef90_A0A8F0WD75	79.7	9.03e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1344782_33	1408437.JNJN01000043_gene801	75.5	0.00000000000000681	N/A	N/A
KOfam	UHGV-1344782_34	K06400	372.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1344782_34	phrog_95	362.5	0	integrase	integration and excision
UniRef90	UHGV-1344782_34	UniRef90_UPI0019572FB3	519.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1344782_34	1235835.C814_00825	430.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1344782_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1344782_34	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1344782_34	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1344782_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1344782_34	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1344782_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1344782_35	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344782_36	1121924.ATWH01000011_gene257	94.4	1.46e-18	TM2 domain	N/A
COG	UHGV-1344782_36	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1344782_38	K22300	64.1	2.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1344782_38	phrog_8	58.3	1.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1344782_38	UniRef90_A0A1Y4H5B2	121.0	3.36e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1344782_38	748224.HMPREF9436_01444	119.0	1.07e-32	N/A	N/A
PADLOC	UHGV-1344782_38	retron_type_VI_hth_cluster2_1	49.8	0.000000000000075	N/A	Retron
Pfam	UHGV-1344782_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1344782_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1344782_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_43	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1344782_44	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_46	phrog_9298	61.0	1.5e-17	radical SAM domain protein	other
UniRef90	UHGV-1344782_46	UniRef90_D4C6F1	311.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1344782_46	742738.HMPREF9460_03770	297.0	0	radical SAM domain protein	N/A
COG	UHGV-1344782_46	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1344782_46	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_51	phrog_38832	61.0	5.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1344782_51	665956.HMPREF1032_03087	79.3	1.02e-16	N/A	N/A
structural_annotation	UHGV-1344782_51	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_52	phrog_2470	57.7	1.9e-16	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1344782_52	UniRef90_A0A414ZRJ4	127.0	3.25e-36	N/A	N/A
eggNOG-mapper	UHGV-1344782_52	649747.HMPREF0083_06229	55.5	0.0000000202	N/A	N/A
Pfam	UHGV-1344782_52	PF11750	N/A	N/A	N/A	DUF3307
structural_annotation	UHGV-1344782_52	PF11750	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_57	phrog_190	105.7	4.1e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344782_57	UniRef90_UPI0006C2AC63	121.0	1.72e-32	N/A	N/A
eggNOG-mapper	UHGV-1344782_57	693746.OBV_25250	115.0	5.65e-31	N/A	N/A
Pfam	UHGV-1344782_57	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1344782_57	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1344782_64	K00571	86.2	4e-25	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1344782_64	phrog_23224	79.9	2e-25	DNA methyltransferase	other
UniRef90	UHGV-1344782_64	UniRef90_A0A7X6XB28	278.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1344782_64	718252.FP2_06750	182.0	0	DNA methylase	N/A
PADLOC	UHGV-1344782_64	MTase_II_00172	109.0	6.2e-32	Type II methyltransferase	RM
Pfam	UHGV-1344782_64	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1344782_64	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1344782_64	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_65	phrog_3584	117.5	9.9e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1344782_65	537013.CLOSTMETH_02141	78.6	0.0000000000000047	N/A	N/A
structural_annotation	UHGV-1344782_65	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1344782_66	1007096.BAGW01000031_gene129	77.4	1.63e-16	N/A	N/A
structural_annotation	UHGV-1344782_66	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1344782_67	phrog_119	54.3	0.000000000000002	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1344782_67	UniRef90_R6M5E4	120.0	2.57e-33	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-1344782_67	1235793.C809_01915	121.0	5.2e-34	HNH endonuclease	N/A
Pfam	UHGV-1344782_67	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1344782_67	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A