UHGV-1346986 (vOTU-054121)

Viral Genome: UHGV-1346986

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1346986
vOTU ID	vOTU-054121
Representative Genome?	Yes
Source	GVD
Original genome ID	Nadia_combined_trimmed_NODE_28_length_48566_cov_261.756694
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.58
Jumbo phage	No

Genome content
Genome length (bp)	48,511
GC content	48.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	93%
Average CDS length (bps)	683.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1346986_1	K05521	213.8	0	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	N/A
PHROG	UHGV-1346986_1	phrog_6572	121.7	2.6e-37	ADP-ribosylglycohydrolase	other
UniRef90	UHGV-1346986_1	UniRef90_A8SL27	250.0	0	Putative ADP-ribosyl-[dinitrogen reductase] hydrolase	N/A
eggNOG-mapper	UHGV-1346986_1	411465.PEPMIC_00852	250.0	0	ADP-ribosylglycohydrolase	N/A
Pfam	UHGV-1346986_1	PF03747	N/A	N/A	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
COG	UHGV-1346986_1	COG1397	N/A	N/A	ADP-ribosylglycohydrolase	N/A
structural_annotation	UHGV-1346986_1	PF03747,NF041672,COG1397	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_3	phrog_1657	137.9	9.79998e-41	head morphogenesis	head and packaging
eggNOG-mapper	UHGV-1346986_3	1121342.AUCO01000012_gene1699	141.0	2.97e-34	N/A	N/A
Pfam	UHGV-1346986_3	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1346986_3	PF03496,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_4	phrog_64	113.8	1.1e-33	portal protein	head and packaging
UniRef90	UHGV-1346986_4	UniRef90_A0A843GSM3	399.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1346986_4	1121342.AUCO01000012_gene1700	143.0	2.25e-34	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1346986_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1346986_4	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_5	phrog_21825	182.8	0	endolysin	lysis
UniRef90	UHGV-1346986_5	UniRef90_A0A286TCG0	215.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1346986_5	702459.BBPR_0931	211.0	0	NLP P60 protein	N/A
Pfam	UHGV-1346986_5	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1346986_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1346986_5	PF00877,TIGR02594,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_6	phrog_881	70.1	2e-20	holin	lysis
UniRef90	UHGV-1346986_6	UniRef90_UPI001C57C615	100.0	3.43e-26	phage holin	N/A
eggNOG-mapper	UHGV-1346986_6	78345.BMERY_0861	94.4	1.58e-24	Putative phage holin Dp-1	N/A
Pfam	UHGV-1346986_6	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1346986_6	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_8	K06909	297.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1346986_8	phrog_3717	130.6	1.70006e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1346986_8	UniRef90_A0A349YI29	602.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1346986_8	1443122.Z958_p0035	430.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1346986_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1346986_8	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1346986_8	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1346986_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1346986_8	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_9	phrog_309	108.3	2.3e-32	terminase small subunit	head and packaging
UniRef90	UHGV-1346986_9	UniRef90_A0A843GSL4	120.0	3.11e-30	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1346986_9	525919.Apre_0833	111.0	7.01e-28	transposase activity	N/A
COG	UHGV-1346986_9	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1346986_9	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_17	K03469	158.5	0	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1346986_17	phrog_531	148.8	2.24208e-44	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_17	UniRef90_A0A1M5KFY9	119.0	1.8e-31	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1346986_17	643648.Slip_0653	119.0	5.08e-32	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1346986_17	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1346986_17	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1346986_17	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_21	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_22	phrog_2002	56.3	3.4e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1346986_22	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_29	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_30	phrog_1990	64.9	1.2e-18	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_30	UniRef90_A0A7C5DUU7	58.2	0.00000258	Dna2/Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1346986_30	1499968.TCA2_4616	65.9	0.00000000137	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-1346986_30	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-1346986_30	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1346986_31	UniRef90_UPI0019173E4D	58.2	0.00000299	DNA-3-methyladenine glycosylase 2 family protein	N/A
Pfam	UHGV-1346986_31	PF07934	N/A	N/A	8-oxoguanine DNA glycosylase, N-terminal domain	OGG_N
COG	UHGV-1346986_31	COG0122	N/A	N/A	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	N/A
structural_annotation	UHGV-1346986_31	PF07934,PF00730,MF_00942,TIGR00588,COG0122	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_32	K01493	85.5	7.4e-25	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-1346986_32	phrog_174	106.1	1.8e-31	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_32	UniRef90_D3E3M5	169.0	0	CMP/dCMP deaminase	N/A
eggNOG-mapper	UHGV-1346986_32	634498.mru_1286	169.0	0	deaminase	N/A
Pfam	UHGV-1346986_32	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-1346986_32	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-1346986_32	PF00383,TIGR02571,COG2131	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_33	K03553	177.3	0	recA; recombination protein RecA	N/A
PHROG	UHGV-1346986_33	phrog_97	164.9	0	UvsX-like recombinase	other
UniRef90	UHGV-1346986_33	UniRef90_A0A843GSV7	375.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1346986_33	1123500.ATUU01000001_gene371	145.0	1.31e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-1346986_33	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-1346986_33	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
KOfam	UHGV-1346986_35	K02337	711.7	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-1346986_35	phrog_405	658.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_35	UniRef90_A0A843GPT9	1060.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1346986_35	436114.SYO3AOP1_0632	419.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-1346986_35	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-1346986_35	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-1346986_35	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-1346986_35	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-1346986_35	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-1346986_35	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-1346986_35	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_36	K00560	134.1	1.1e-39	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-1346986_36	phrog_5131	171.9	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_36	UniRef90_A0A1X1L757	158.0	2.45227e-43	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-1346986_36	1408254.T458_24480	140.0	3.87e-37	Thymidylate synthase	N/A
Pfam	UHGV-1346986_36	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-1346986_36	COG0207	N/A	N/A	Thymidylate synthase	N/A
structural_annotation	UHGV-1346986_36	PF00303,MF_01686,NF002497,COG0207	N/A	N/A	N/A	N/A
UniRef90	UHGV-1346986_37	UniRef90_UPI0012B74A44	110.0	2.55e-23	glycosyltransferase	N/A
eggNOG-mapper	UHGV-1346986_37	1089546.AQUI01000002_gene3203	115.0	6.85e-26	N/A	N/A
structural_annotation	UHGV-1346986_37	PF20706,MF_01695,NF041010,COG0438	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_38	PF07429,MF_01002,NF002752,COG1819	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_39	phrog_761	62.5	9.6e-18	thymidylate kinase	other
UniRef90	UHGV-1346986_39	UniRef90_A0A218KBZ0	55.8	0.00000177	Deoxynucleoside kinase	N/A
Pfam	UHGV-1346986_39	PF02223	N/A	N/A	Thymidylate kinase	Thymidylate_kin
structural_annotation	UHGV-1346986_39	PF01591,MF_00165,NF005250,COG0125	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_40	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_41	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-1346986_42	K02316	131.7	5.5e-39	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1346986_42	phrog_47	129.2	3.5e-38	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1346986_42	UniRef90_A0A843GN62	302.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-1346986_42	941824.TCEL_01968	97.1	2.58e-19	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-1346986_42	drt-UG29	72.5	3.4e-23	DRT	DRT
Pfam	UHGV-1346986_42	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-1346986_42	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-1346986_42	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1346986_42	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_49	phrog_15594	68.3	9.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1346986_49	1118055.CAGU01000013_gene763	48.9	0.00000537	N/A	N/A
structural_annotation	UHGV-1346986_49	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_51	phrog_11393	50.8	7.8e-34	tail fiber protein	tail
eggNOG-mapper	UHGV-1346986_51	411464.DESPIG_00760	64.7	0.0000000128	tail collar domain protein	N/A
COG	UHGV-1346986_51	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1346986_53	phrog_18110	139.7	1.40004e-41	N/A	unknown function
UniRef90	UHGV-1346986_53	UniRef90_UPI001EE851DD	342.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1346986_53	999413.HMPREF1094_00205	160.0	6.82e-39	N/A	N/A
Pfam	UHGV-1346986_53	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1346986_53	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1346986_53	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-1346986_54	457396.CSBG_01058	57.0	0.000000697	phage tail	N/A
COG	UHGV-1346986_54	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1346986_54	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_55	phrog_58	217.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1346986_55	1111121.HMPREF1247_0787	294.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1346986_55	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1346986_56	phrog_6280	127.1	6.1e-38	N/A	unknown function
UniRef90	UHGV-1346986_56	UniRef90_UPI001E3BEC7F	108.0	4.23e-27	esterase	N/A
eggNOG-mapper	UHGV-1346986_56	445335.CBN_3078	102.0	6.2e-26	N/A	N/A
PHROG	UHGV-1346986_57	phrog_6686	136.7	1.2e-40	tail tube protein	tail
UniRef90	UHGV-1346986_57	UniRef90_A0A1C6KI12	155.0	1.24716e-43	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1346986_57	871584.D9ZNE2_9CAUD	110.0	1.1e-27	N/A	N/A
structural_annotation	UHGV-1346986_57	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_58	phrog_7585	88.0	9.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1346986_58	1121342.AUCO01000012_gene1689	68.6	0.000000000000631	N/A	N/A
structural_annotation	UHGV-1346986_58	PF05657,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1346986_59	580331.Thit_1383	75.1	6.4e-16	N/A	N/A
structural_annotation	UHGV-1346986_59	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1346986_60	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_61	phrog_4020	56.2	5.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1346986_61	748727.CLJU_c31290	47.8	0.00000636	N/A	N/A
PHROG	UHGV-1346986_63	phrog_29	257.5	0	major head protein	head and packaging
UniRef90	UHGV-1346986_63	UniRef90_UPI00082C04A5	397.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1346986_63	1158612.I580_01912	322.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1346986_63	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1346986_63	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_64	phrog_909	51.7	0.000000000000015	major head protein	head and packaging
UniRef90	UHGV-1346986_64	UniRef90_A0A512PLH0	52.0	0.00000567	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-1346986_64	1158612.I580_01911	80.9	6.18e-18	N/A	N/A
structural_annotation	UHGV-1346986_64	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1346986_65	phrog_2303	71.2	4.9e-21	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1346986_65	1121871.AUAT01000035_gene1288	53.9	0.00000467	N/A	N/A
structural_annotation	UHGV-1346986_65	PF10788,MF_02110	N/A	N/A	N/A	N/A