UHGV-1347739 (vOTU-033016)

Viral Genome: UHGV-1347739

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1347739
vOTU ID	vOTU-033016
Representative Genome?	Yes
Source	GVD
Original genome ID	Monaco_MBA1267_NODE_36_length_28702_cov_7.348239
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.39
Jumbo phage	No

Genome content
Genome length (bp)	28,702
GC content	53.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	90%
Average CDS length (bps)	515.22
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1347739_1	phrog_544	82.0	8.9e-24	major head protein	head and packaging
eggNOG-mapper	UHGV-1347739_1	476272.RUMHYD_01776	162.0	0	N/A	N/A
structural_annotation	UHGV-1347739_2	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_3	phrog_5	42.1	0.000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-1347739_3	UniRef90_A0A6N7TNP6	234.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1347739_3	929506.CbC4_1219	89.7	8.18e-21	N/A	N/A
structural_annotation	UHGV-1347739_3	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_4	phrog_478	124.3	5.5e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1347739_4	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1347739_4	1111121.HMPREF1247_0834	90.1	2.12e-21	N/A	N/A
PHROG	UHGV-1347739_7	phrog_595	83.8	2.7e-24	head maturation protease	head and packaging
UniRef90	UHGV-1347739_7	UniRef90_A0A844DBI4	550.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1347739_7	1280673.AUJJ01000006_gene3192	68.6	0.000000000202	N/A	N/A
Pfam	UHGV-1347739_7	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
PHROG	UHGV-1347739_8	phrog_64	115.5	1.7e-34	portal protein	head and packaging
UniRef90	UHGV-1347739_8	UniRef90_A0A6N7TNT3	484.0	0	Phage portal protein	N/A
Pfam	UHGV-1347739_8	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1347739_8	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1347739_9	K06909	340.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1347739_9	phrog_3717	130.6	9.9e-39	terminase large subunit	head and packaging
UniRef90	UHGV-1347739_9	UniRef90_A0A1Y4ES07	510.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1347739_9	411471.SUBVAR_06507	467.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1347739_9	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1347739_9	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1347739_9	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1347739_9	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1347739_10	phrog_887	146.5	1.79366e-43	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1347739_10	UniRef90_A0A6N7S662	236.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1347739_10	445970.ALIPUT_02667	118.0	3.97e-27	N/A	N/A
Pfam	UHGV-1347739_10	PF06177	N/A	N/A	QueT transporter	QueT
PHROG	UHGV-1347739_11	phrog_620	135.7	2e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347739_11	UniRef90_A0A3F3JUE2	345.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1347739_11	748224.HMPREF9436_03344	234.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-1347739_11	MTase_II_00015	56.1	9.1e-16	Type II methyltransferase	RM
Pfam	UHGV-1347739_11	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1347739_11	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1347739_12	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347739_13	PF14354	N/A	N/A	N/A	N/A
KOfam	UHGV-1347739_14	K01160	57.0	6.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1347739_14	phrog_34	57.4	3.5e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347739_14	UniRef90_UPI0012DF3C2B	177.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1347739_14	525919.Apre_0813	117.0	2.64e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1347739_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1347739_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1347739_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347739_20	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1347739_21	K02086	58.0	9.6e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-1347739_21	phrog_6251	196.9	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347739_21	UniRef90_UPI001CBE9731	197.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1347739_21	634956.Geoth_0760	154.0	2.39062e-42	dnaD_dom DnaD domain protein	N/A
Pfam	UHGV-1347739_21	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1347739_21	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1347739_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1347739_21	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
Pfam	UHGV-1347739_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1347739_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1347739_22	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_23	phrog_2760	180.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1347739_23	UniRef90_A0A3E2UDI4	412.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1347739_23	1235794.C811_01355	147.0	1.09e-39	RecT family	N/A
Pfam	UHGV-1347739_23	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1347739_23	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1347739_23	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1347739_23	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_24	phrog_674	142.8	2.59941e-42	N/A	unknown function
UniRef90	UHGV-1347739_24	UniRef90_A0A3E2UDL3	362.0	0	N/A	N/A
eggNOG-mapper	UHGV-1347739_24	742722.HMPREF9463_00201	84.0	0.00000000000000136	N/A	N/A
Pfam	UHGV-1347739_24	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1347739_24	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1347739_25	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347739_26	UniRef90_UPI00130EBC54	142.0	8.60397e-43	N/A	N/A
eggNOG-mapper	UHGV-1347739_26	445972.ANACOL_01800	48.1	0.00000285	N/A	N/A
COG	UHGV-1347739_26	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1347739_26	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347739_27	UniRef90_E2ZNT7	131.0	1.17e-38	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1347739_27	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1347739_27	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_28	phrog_37083	226.7	0	N/A	unknown function
PHROG	UHGV-1347739_29	phrog_7711	114.8	4.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1347739_29	1304866.K413DRAFT_1204	113.0	3.4e-30	N/A	N/A
PHROG	UHGV-1347739_31	phrog_1221	275.5	0	N/A	unknown function
UniRef90	UHGV-1347739_31	UniRef90_E2ZNU3	595.0	0	Phage/plasmid-related protein TIGR03299	N/A
eggNOG-mapper	UHGV-1347739_31	748224.HMPREF9436_03374	595.0	0	N/A	N/A
Pfam	UHGV-1347739_31	PF06067	N/A	N/A	N/A	DUF932
NCBIFam	UHGV-1347739_31	TIGR03299.1	N/A	N/A	phage/plasmid-like protein TIGR03299	N/A
structural_annotation	UHGV-1347739_31	PF06067,TIGR03299	N/A	N/A	N/A	N/A
UniRef90	UHGV-1347739_34	UniRef90_A0A3E2UZE6	191.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1347739_34	1378168.N510_01712	79.0	0.00000000000000412	N/A	N/A
eggNOG-mapper	UHGV-1347739_37	1280696.ATVY01000034_gene3237	100.0	2.6e-23	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-1347739_37	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
PHROG	UHGV-1347739_40	phrog_2328	41.3	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1347739_40	UniRef90_A0A6N7TLT0	349.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1347739_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1347739_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1347739_40	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1347739_41	K14059	122.0	8.6e-36	int; integrase	N/A
PHROG	UHGV-1347739_41	phrog_1	102.7	6.3e-30	integrase	integration and excision
UniRef90	UHGV-1347739_41	UniRef90_E2ZNV1	738.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1347739_41	748224.HMPREF9436_03382	738.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1347739_41	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1347739_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1347739_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1347739_41	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1347739_43	476272.RUMHYD_01772	54.3	0.000000357	N/A	N/A
structural_annotation	UHGV-1347739_43	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_44	phrog_20016	202.5	0	N/A	unknown function
UniRef90	UHGV-1347739_44	UniRef90_A0A285PT46	219.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1347739_44	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-1347739_44	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1347739_46	phrog_16490	150.6	9.80909e-45	N/A	unknown function
eggNOG-mapper	UHGV-1347739_46	1408437.JNJN01000043_gene803	125.0	4.24e-32	N/A	N/A
PHROG	UHGV-1347739_47	phrog_22984	81.2	7.1e-24	N/A	unknown function
PHROG	UHGV-1347739_48	phrog_21718	117.7	8.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1347739_48	397290.C810_05210	103.0	4.26e-26	N/A	N/A
PHROG	UHGV-1347739_49	phrog_3754	91.1	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1347739_49	1235790.C805_00054	108.0	1.06e-28	N/A	N/A
structural_annotation	UHGV-1347739_50	PF16509,TIGR03209,COG2739	N/A	N/A	N/A	N/A