UHGV-1348509 (vOTU-009818)

Viral Genome: UHGV-1348509

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1348509
vOTU ID	vOTU-009818
Representative Genome?	Yes
Source	GVD
Original genome ID	Rampelli_SM_02_NODE_314_length_51816_cov_87.112942
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.24
Jumbo phage	No

Genome content
Genome length (bp)	51,816
GC content	46.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	88
CDS density	90%
Average CDS length (bps)	532.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1348509_1	1408437.JNJN01000043_gene805	68.9	0.000000000000305	N/A	N/A
PHROG	UHGV-1348509_4	phrog_16490	77.0	2.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-1348509_4	1408437.JNJN01000043_gene803	103.0	8.91e-24	N/A	N/A
eggNOG-mapper	UHGV-1348509_5	1408437.JNJN01000043_gene802	153.0	0	N/A	N/A
eggNOG-mapper	UHGV-1348509_6	1378168.N510_03079	95.9	2.36e-21	N/A	N/A
PHROG	UHGV-1348509_7	phrog_4402	156.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_7	UniRef90_A0A3A9E5A5	190.0	0	RepB family plasmid replication initiator protein	N/A
eggNOG-mapper	UHGV-1348509_7	1395513.P343_18240	168.0	0	Protein involved in initiation of plasmid replication	N/A
Pfam	UHGV-1348509_7	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1348509_7	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1348509_7	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1348509_7	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_8	PF20063,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_12	K03111	129.8	3.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1348509_12	phrog_44	125.3	5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_12	UniRef90_A0A7C6GL00	151.0	1.82169e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1348509_12	1232443.BAIA02000073_gene513	119.0	1.48e-32	Single-strand binding protein family	N/A
Pfam	UHGV-1348509_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1348509_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1348509_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1348509_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1348509_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_14	phrog_474	83.0	5.9e-24	phosphofructokinase	other
UniRef90	UHGV-1348509_14	UniRef90_UPI00195F5FF7	96.3	9.95e-24	N/A	N/A
eggNOG-mapper	UHGV-1348509_14	1095750.HMPREF9970_1026	75.9	1.66e-16	N/A	N/A
Pfam	UHGV-1348509_14	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1348509_14	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_15	K01160	48.3	0.00000000000029	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1348509_15	phrog_4632	49.1	0.0000000000000098	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_15	UniRef90_A0A7X8IB41	115.0	9.24e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1348509_15	556263.FSEG_00477	67.4	0.00000000000119	N/A	N/A
structural_annotation	UHGV-1348509_15	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_24	PF06289,COG1582	N/A	N/A	N/A	N/A
UniRef90	UHGV-1348509_25	UniRef90_UPI001E4B013D	66.2	0.00000000203	N/A	N/A
structural_annotation	UHGV-1348509_27	PF17384	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_28	phrog_757	192.2	0	DNA methyltransferase	other
UniRef90	UHGV-1348509_28	UniRef90_A0A417JTT5	241.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1348509_28	1095750.HMPREF9970_0173	210.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1348509_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1348509_28	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_29	PF18129,NF000331	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_30	K01520	134.6	8.1e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1348509_30	phrog_135	114.0	1.1e-33	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_30	UniRef90_R6ILQ3	146.0	1.34945e-42	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1348509_30	1282887.AUJG01000016_gene1113	140.0	5.93e-40	N/A	N/A
Pfam	UHGV-1348509_30	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1348509_30	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1348509_30	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1348509_30	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_36	K02315	161.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1348509_36	phrog_50	148.4	5.04467e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_36	UniRef90_R6WX70	201.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1348509_36	1321784.HMPREF1987_01633	173.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1348509_36	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1348509_36	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1348509_36	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1348509_36	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_37	phrog_270	90.5	2.4e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1348509_37	945021.TEH_18370	94.4	3.05e-20	Helix-turn-helix domain	N/A
COG	UHGV-1348509_37	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-1348509_37	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_38	PF13744,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_40	phrog_392	121.2	1e-35	metal-dependent hydrolase	other
UniRef90	UHGV-1348509_40	UniRef90_A0A7X8XIL0	220.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1348509_40	1423755.BAML01000007_gene625	58.2	0.000000236	domain protein	N/A
Pfam	UHGV-1348509_40	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1348509_40	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1348509_40	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_41	K07455	179.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1348509_41	phrog_148	196.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1348509_41	UniRef90_A0A355KWE4	348.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1348509_41	1408437.JNJN01000039_gene372	305.0	0	RecT family	N/A
Pfam	UHGV-1348509_41	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1348509_41	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1348509_41	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1348509_41	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_42	phrog_674	135.4	4.1e-40	N/A	unknown function
UniRef90	UHGV-1348509_42	UniRef90_UPI001AC97819	119.0	2.73e-28	N/A	N/A
eggNOG-mapper	UHGV-1348509_42	1127692.HMPREF9075_00081	75.9	0.000000000000596	N/A	N/A
Pfam	UHGV-1348509_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1348509_42	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_45	K07741	195.9	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1348509_45	phrog_63	167.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1348509_45	UniRef90_A0A1C6EMR2	321.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-1348509_45	386415.NT01CX_2199	303.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1348509_45	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1348509_45	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1348509_45	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1348509_45	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-1348509_47	K18830	48.5	0.00000000000017	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1348509_47	phrog_8	43.6	0.0000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-1348509_47	UniRef90_U2DIE4	103.0	6.05e-26	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1348509_47	1235797.C816_03553	92.4	9.47e-22	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1348509_47	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1348509_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1348509_47	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1348509_50	UniRef90_A0A1Y3X9H7	75.5	0.00000000000103	Peptidase	N/A
eggNOG-mapper	UHGV-1348509_50	411467.BACCAP_02394	79.0	0.00000000000000927	Peptidase propeptide and YPEB domain	N/A
Pfam	UHGV-1348509_50	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-1348509_50	COG3212	N/A	N/A	PepSY domain containing protein, regulator of zincin peptidase activity	N/A
structural_annotation	UHGV-1348509_50	PF07705,COG5633	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_52	phrog_25567	46.8	0.00000000000039	N/A	unknown function
eggNOG-mapper	UHGV-1348509_52	888727.HMPREF9092_1413	48.9	0.00000499	Helix-turn-helix	N/A
COG	UHGV-1348509_52	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1348509_52	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_54	PF19129,NF007348,COG5569	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_56	phrog_10415	43.7	0.0000000000035	N/A	unknown function
UniRef90	UHGV-1348509_56	UniRef90_A0A6H1ZT64	57.4	0.00000183	LPD29 domain-containing protein	N/A
COG	UHGV-1348509_56	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-1348509_59	phrog_13890	51.7	0.0000000000000077	N/A	unknown function
UniRef90	UHGV-1348509_59	UniRef90_A0A316SBZ9	55.8	0.0000000263	Antitoxin	N/A
structural_annotation	UHGV-1348509_59	COG4226	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1348509_60	1280663.ATVR01000009_gene2143	55.1	0.000000743	N/A	N/A
Pfam	UHGV-1348509_60	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
UniRef90	UHGV-1348509_61	UniRef90_A0A117MDL0	85.1	2.03e-18	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1348509_61	1123388.AQWU01000067_gene621	84.3	1.53e-18	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
COG	UHGV-1348509_61	COG0328	N/A	N/A	Ribonuclease HI	N/A
PHROG	UHGV-1348509_62	phrog_38	164.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1348509_62	UniRef90_A0A843GZU6	596.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1348509_62	476272.RUMHYD_01940	427.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1348509_62	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1348509_62	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1348509_62	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_64	phrog_64	199.2	0	portal protein	head and packaging
UniRef90	UHGV-1348509_64	UniRef90_A0A845RCM8	419.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1348509_64	1123263.AUKY01000015_gene1609	320.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1348509_64	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1348509_64	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_65	phrog_115	55.0	0.0000000000000017	minor head protein	head and packaging
eggNOG-mapper	UHGV-1348509_65	278197.PEPE_0506	64.3	0.000000000176	Phage Mu protein F like protein	N/A
Pfam	UHGV-1348509_65	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1348509_65	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-1348509_65	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_68	phrog_29	195.6	0	major head protein	head and packaging
UniRef90	UHGV-1348509_68	UniRef90_A0A2Z4QBB4	368.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1348509_68	1232453.BAIF02000058_gene1628	248.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1348509_68	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1348509_68	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1348509_70	UniRef90_UPI001D07B1DB	103.0	1.4e-26	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1348509_70	1298920.KI911353_gene2658	54.3	0.0000000407	N/A	N/A
structural_annotation	UHGV-1348509_70	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1348509_71	1298920.KI911353_gene2656	77.0	3.2e-16	N/A	N/A
eggNOG-mapper	UHGV-1348509_73	469596.HMPREF9488_01309	52.4	0.000000789	N/A	N/A
structural_annotation	UHGV-1348509_73	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1348509_74	UniRef90_UPI001A9B3C90	96.7	8.38e-23	phage tail protein	N/A
structural_annotation	UHGV-1348509_74	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1348509_75	UniRef90_UPI000F53F45B	52.8	0.00000176	N/A	N/A
eggNOG-mapper	UHGV-1348509_75	1211844.CBLM010000023_gene988	59.3	0.000000000775	N/A	N/A
Pfam	UHGV-1348509_75	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1348509_75	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1348509_76	1121333.JMLH01000047_gene1011	67.4	0.00000000000335	N/A	N/A
PHROG	UHGV-1348509_77	phrog_1535	69.5	2.1e-20	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1348509_77	1123263.AUKY01000015_gene1620	115.0	2.01e-23	Phage tail tape measure protein TP901	N/A
COG	UHGV-1348509_77	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1348509_78	phrog_1194	83.3	2.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1348509_78	1122919.KB905559_gene1345	54.3	0.000000105	N/A	N/A
Pfam	UHGV-1348509_78	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1348509_78	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_79	phrog_6616	99.6	2.6e-29	tail protein	tail
eggNOG-mapper	UHGV-1348509_79	1226322.HMPREF1545_00064	65.1	0.0000000992	N/A	N/A
structural_annotation	UHGV-1348509_81	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1348509_84	phrog_4105	98.8	3.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1348509_84	397288.C806_00056	98.6	2.6e-25	N/A	N/A
KOfam	UHGV-1348509_85	K19304	99.5	4.5e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1348509_85	phrog_7767	98.4	5.8e-29	metallo-endopeptidase	other
UniRef90	UHGV-1348509_85	UniRef90_A0A1E1VI95	85.9	0.0000000000000012	Muramidase	N/A
eggNOG-mapper	UHGV-1348509_85	1158601.I585_02846	93.6	1.02e-17	Peptidase family M23	N/A
Pfam	UHGV-1348509_85	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1348509_85	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-1348509_85	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1348509_85	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1348509_87	1121334.KB911071_gene1966	55.1	0.00000000628	N/A	N/A