UHGV-1350873 (vOTU-083419)

Viral Genome: UHGV-1350873

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1350873
vOTU ID	vOTU-083419
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677796_NODE_31_length_39276_cov_279.900538
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.73 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.59
Jumbo phage	No

Genome content
Genome length (bp)	39,276
GC content	50.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	92%
Average CDS length (bps)	509.37
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1350873_1	UniRef90_A0A4D7ANR2	78.2	1.05e-16	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1350873_1	1226322.HMPREF1545_00021	51.6	0.00000058	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1350873_1	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_3	phrog_10714	71.1	1.2e-20	N/A	unknown function
UniRef90	UHGV-1350873_3	UniRef90_UPI001C3A10B1	60.1	0.0000000039	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_3	1226322.HMPREF1545_00023	179.0	0	N/A	N/A
PHROG	UHGV-1350873_5	phrog_25732	67.5	1.6e-19	N/A	unknown function
structural_annotation	UHGV-1350873_5	NF011227	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1350873_6	189425.PGRAT_18935	112.0	6.82e-31	N/A	N/A
eggNOG-mapper	UHGV-1350873_7	665956.HMPREF1032_03084	48.5	0.00000443	N/A	N/A
PHROG	UHGV-1350873_13	phrog_22543	54.4	0.0000000000000021	N/A	unknown function
PHROG	UHGV-1350873_15	phrog_8684	89.9	8.7e-28	N/A	unknown function
UniRef90	UHGV-1350873_15	UniRef90_UPI00164C829D	240.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1350873_15	1226322.HMPREF1545_00036	90.9	8.28e-22	YopX protein	N/A
Pfam	UHGV-1350873_15	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1350873_15	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_16	UniRef90_A0A1C5WAG7	155.0	0	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1350873_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1350873_16	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_18	UniRef90_UPI0018A8F249	254.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1350873_18	1235790.C805_00037	134.0	2.55e-38	N/A	N/A
structural_annotation	UHGV-1350873_18	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1350873_19	K06909	124.9	7.9e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1350873_19	phrog_10250	152.2	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1350873_19	UniRef90_UPI0018AC3323	768.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1350873_19	476272.RUMHYD_01756	457.0	0	N/A	N/A
Pfam	UHGV-1350873_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1350873_19	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1350873_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1350873_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1350873_19	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_20	phrog_533	424.5	0	portal protein	head and packaging
UniRef90	UHGV-1350873_20	UniRef90_U2R2D2	908.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1350873_20	1226322.HMPREF1545_00044	908.0	0	N/A	N/A
Pfam	UHGV-1350873_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1350873_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_21	phrog_581	310.9	0	minor head protein	head and packaging
UniRef90	UHGV-1350873_21	UniRef90_U2SBR7	662.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_21	1226322.HMPREF1545_00046	662.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1350873_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1350873_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350873_21	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350873_22	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_23	phrog_2303	55.6	0.000000000000001	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1350873_23	1226322.HMPREF1545_00049	265.0	0	N/A	N/A
AcrCatalog	UHGV-1350873_23	cluster_74817	48.5	0.00000000237	NA	N/A
PHROG	UHGV-1350873_24	phrog_10	172.7	0	major head protein	head and packaging
UniRef90	UHGV-1350873_24	UniRef90_A0A2U1BEF2	686.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1350873_24	1226322.HMPREF1545_00050	570.0	0	Phage capsid family	N/A
Pfam	UHGV-1350873_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1350873_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1350873_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1350873_24	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_25	phrog_541	120.4	8.1e-36	head-tail adaptor	connector
eggNOG-mapper	UHGV-1350873_25	1120998.AUFC01000030_gene2237	69.7	0.000000000000221	N/A	N/A
PHROG	UHGV-1350873_26	phrog_3366	119.3	2.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1350873_26	1226322.HMPREF1545_00053	292.0	0	N/A	N/A
structural_annotation	UHGV-1350873_26	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_27	phrog_556	71.2	1.3e-20	minor head protein	head and packaging
UniRef90	UHGV-1350873_27	UniRef90_UPI00189F11C5	172.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1350873_27	1226322.HMPREF1545_00054	271.0	0	Minor capsid protein	N/A
Pfam	UHGV-1350873_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1350873_27	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_28	phrog_3266	50.2	0.00000000000004	tail completion	connector
eggNOG-mapper	UHGV-1350873_28	1226322.HMPREF1545_00055	280.0	0	N/A	N/A
structural_annotation	UHGV-1350873_28	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_29	phrog_3099	107.5	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-1350873_29	1226322.HMPREF1545_00056	343.0	0	N/A	N/A
structural_annotation	UHGV-1350873_29	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_30	phrog_11299	160.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1350873_30	1226322.HMPREF1545_00057	259.0	0	N/A	N/A
structural_annotation	UHGV-1350873_30	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_31	phrog_706	127.5	8.9e-38	N/A	unknown function
UniRef90	UHGV-1350873_31	UniRef90_UPI0018A0FACA	218.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1350873_31	1226322.HMPREF1545_00058	368.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1350873_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1350873_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_32	phrog_1535	267.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1350873_32	UniRef90_R6TDK7	368.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1350873_32	1226322.HMPREF1545_00059	1176.0	0	tape measure	N/A
COG	UHGV-1350873_32	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1350873_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_33	phrog_1194	71.1	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1350873_33	1226322.HMPREF1545_00060	265.0	0	N/A	N/A
structural_annotation	UHGV-1350873_33	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_34	phrog_13879	432.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1350873_34	1226322.HMPREF1545_00061	942.0	0	N/A	N/A
structural_annotation	UHGV-1350873_34	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_35	phrog_18725	87.1	1.09301e-43	N/A	unknown function
eggNOG-mapper	UHGV-1350873_35	1226322.HMPREF1545_00062	184.0	0	N/A	N/A
structural_annotation	UHGV-1350873_35	PF00354	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_37	phrog_10993	325.3	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1350873_37	UniRef90_A0A4D7AM78	931.0	0	N/A	N/A
eggNOG-mapper	UHGV-1350873_37	1226322.HMPREF1545_00064	509.0	0	N/A	N/A
Pfam	UHGV-1350873_37	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1350873_37	PF19789,PF19081,PF12733,PF18463,MF_04116,NF032891,COG3401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1350873_38	1226322.HMPREF1545_00128	93.6	2.63e-23	N/A	N/A
PHROG	UHGV-1350873_39	phrog_2310	56.5	2.7e-16	N/A	unknown function
PHROG	UHGV-1350873_40	phrog_937	49.9	0.000000000000033	hemolysin	other
eggNOG-mapper	UHGV-1350873_40	445972.ANACOL_03381	118.0	3.72e-33	N/A	N/A
PHROG	UHGV-1350873_42	phrog_1129	71.5	8.3e-21	holin	lysis
UniRef90	UHGV-1350873_42	UniRef90_A0A1C7FPV3	130.0	9.68e-38	Enolase	N/A
eggNOG-mapper	UHGV-1350873_42	1226322.HMPREF1545_00069	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1350873_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1350873_42	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1350873_43	K01447	112.4	6e-33	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1350873_43	phrog_670	157.7	0	endolysin	lysis
UniRef90	UHGV-1350873_43	UniRef90_U2SBT6	429.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1350873_43	1226322.HMPREF1545_00070	429.0	0	Ami_2	N/A
Pfam	UHGV-1350873_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1350873_43	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1350873_43	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_44	UniRef90_U2R3E6	135.0	5.27e-40	KORA domain-containing protein	N/A
structural_annotation	UHGV-1350873_44	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_45	phrog_3754	123.2	8.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1350873_45	1226322.HMPREF1545_00073	261.0	0	N/A	N/A
PHROG	UHGV-1350873_46	phrog_21718	174.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1350873_46	397290.C810_05210	56.2	0.0000000716	N/A	N/A
PHROG	UHGV-1350873_47	phrog_22984	123.5	6.5e-37	N/A	unknown function
PHROG	UHGV-1350873_48	phrog_3377	188.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1350873_48	1507.HMPREF0262_01169	132.0	2.2e-36	N/A	N/A
PHROG	UHGV-1350873_49	phrog_16490	282.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1350873_49	1226322.HMPREF1545_00076	273.0	0	N/A	N/A
PHROG	UHGV-1350873_50	phrog_20016	193.0	0	N/A	unknown function
UniRef90	UHGV-1350873_50	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1350873_50	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1350873_50	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1350873_52	1226322.HMPREF1545_00079	218.0	0	N/A	N/A
KOfam	UHGV-1350873_53	K14059	211.1	0	int; integrase	N/A
PHROG	UHGV-1350873_53	phrog_1	182.8	0	integrase	integration and excision
UniRef90	UHGV-1350873_53	UniRef90_U2QJL8	625.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1350873_53	1226322.HMPREF1545_00144	625.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1350873_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1350873_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1350873_53	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_54	phrog_33872	49.5	0.000000000000039	N/A	unknown function
eggNOG-mapper	UHGV-1350873_55	1298920.KI911353_gene413	164.0	0	N/A	N/A
KOfam	UHGV-1350873_56	K19370	40.2	0.000000000031	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1350873_56	phrog_10292	64.9	9.2e-19	N/A	unknown function
UniRef90	UHGV-1350873_56	UniRef90_A0A1Q6KIC5	145.0	1.63952e-42	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_56	665956.HMPREF1032_00562	133.0	1.36e-38	TM2 domain	N/A
Pfam	UHGV-1350873_56	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1350873_56	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350873_56	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_57	UniRef90_A0A3A9F9H2	70.1	0.000000000000105	S24 family peptidase	N/A
eggNOG-mapper	UHGV-1350873_57	887929.HMP0721_0588	50.4	0.0000093	Cytoplasmic, score 8.87	N/A
Pfam	UHGV-1350873_57	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1350873_57	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
PHROG	UHGV-1350873_58	phrog_2546	40.8	0.000000000013	N/A	unknown function
UniRef90	UHGV-1350873_58	UniRef90_UPI001ADD7737	95.9	9.15e-22	ribosomal protein L7/L12	N/A
eggNOG-mapper	UHGV-1350873_58	1304866.K413DRAFT_4758	89.4	3.49e-20	N/A	N/A
Pfam	UHGV-1350873_58	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1350873_58	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_59	phrog_87	77.9	9.5e-23	metallo-protease	other
UniRef90	UHGV-1350873_59	UniRef90_UPI001D022F2C	204.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1350873_59	1007096.BAGW01000011_gene2354	186.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1350873_59	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1350873_59	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1350873_59	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_60	phrog_8	60.3	4.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1350873_60	UniRef90_UPI0018AA2C84	168.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_60	397291.C804_05804	79.3	2.23e-17	TRANSCRIPTIONal	N/A
COG	UHGV-1350873_60	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-1350873_62	UniRef90_UPI0012AC17D6	114.0	3e-32	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1350873_62	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_64	UniRef90_UPI001379F3AB	300.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_64	1042156.CXIVA_10290	191.0	0	N/A	N/A
Pfam	UHGV-1350873_64	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1350873_64	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1350873_64	MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350873_65	UniRef90_A0A1Y3TSJ8	124.0	2.13e-30	Toxin MazF	N/A
eggNOG-mapper	UHGV-1350873_65	1410624.JNKK01000001_gene664	134.0	3.13e-35	DNA binding	N/A
Pfam	UHGV-1350873_65	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-1350873_65	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1350873_65	PF20188,MF_02015,TIGR03233,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350873_66	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1350873_68	phrog_22529	88.1	6.5e-26	N/A	unknown function
UniRef90	UHGV-1350873_68	UniRef90_A0A7T7IG06	231.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1350873_68	1226322.HMPREF1545_00012	211.0	0	3D domain	N/A
Pfam	UHGV-1350873_68	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1350873_68	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1350873_68	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
COG	UHGV-1350873_69	COG0145	N/A	N/A	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	N/A
structural_annotation	UHGV-1350873_69	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-1350873_70	PF12773	N/A	N/A	Double zinc ribbon	DZR
PHROG	UHGV-1350873_71	phrog_155	52.2	0.000000000000013	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350873_71	UniRef90_UPI00137B63AB	63.2	0.00000000000653	ERF family protein	N/A
eggNOG-mapper	UHGV-1350873_71	748224.HMPREF9436_03360	67.0	0.000000000000517	ERF superfamily	N/A
Pfam	UHGV-1350873_71	PF04404	N/A	N/A	ERF superfamily	ERF