UHGV-1351336 (vOTU-102232)

Viral Genome: UHGV-1351336

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1351336
vOTU ID	vOTU-102232
Representative Genome?	Yes
Source	GVD
Original genome ID	Reyes_2015_F95_Sibling_NODE_1_length_24621_cov_4.184494
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.5
Jumbo phage	No

Genome content
Genome length (bp)	24,621
GC content	53.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	91%
Average CDS length (bps)	477.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1351336_2	phrog_374	60.2	9.5e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_2	UniRef90_UPI0006891852	88.6	9.48e-19	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1351336_2	887929.HMP0721_2097	101.0	9.91e-24	AP2 domain protein	N/A
PHROG	UHGV-1351336_3	phrog_1770	83.4	3e-24	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_3	UniRef90_A0A7W1N8Z0	96.7	5.17e-23	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1351336_3	329726.AM1_4255	97.1	8.12e-24	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1351336_3	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
PHROG	UHGV-1351336_4	phrog_757	177.3	0	DNA methyltransferase	other
UniRef90	UHGV-1351336_4	UniRef90_UPI001C00B13F	399.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1351336_4	748224.HMPREF9436_03069	306.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1351336_4	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1351336_4	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1351336_5	K02315	139.5	2.50006e-41	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1351336_5	phrog_50	124.9	6.7e-37	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_5	UniRef90_A0A3A9ED12	151.0	1.04e-40	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1351336_5	1232447.BAHW02000027_gene2105	150.0	1.85994e-41	N/A	N/A
Pfam	UHGV-1351336_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1351336_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1351336_5	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_6	phrog_20437	160.4	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_6	UniRef90_UPI00137AD09D	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351336_6	445971.ANASTE_00700	161.0	0	N/A	N/A
Pfam	UHGV-1351336_6	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1351336_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1351336_6	PF14297,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_7	phrog_18107	101.1	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1351336_7	476272.RUMHYD_02831	157.0	0	N/A	N/A
structural_annotation	UHGV-1351336_7	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_8	phrog_2872	221.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_8	UniRef90_A0A843H8D6	294.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1351336_8	1415774.U728_1119	290.0	0	AAA domain	N/A
Pfam	UHGV-1351336_8	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1351336_8	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_10	phrog_253	101.3	7.5e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351336_10	UniRef90_A0A1C5N4H2	140.0	8.87e-40	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1351336_10	1226322.HMPREF1545_04074	90.5	6.47e-21	Siphovirus Gp157	N/A
Pfam	UHGV-1351336_10	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1351336_10	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_12	phrog_5781	81.1	1.3e-23	N/A	unknown function
UniRef90	UHGV-1351336_12	UniRef90_A0A2V2FSM6	103.0	9.25e-27	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-1351336_12	573061.Clocel_3558	89.0	1.19e-21	N/A	N/A
Pfam	UHGV-1351336_12	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1351336_12	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1351336_12	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
Pfam	UHGV-1351336_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1351336_16	PF12802	N/A	N/A	MarR family	MarR_2
PHROG	UHGV-1351336_19	phrog_8	46.4	0.00000000000083	transcriptional regulator	transcription regulation
UniRef90	UHGV-1351336_19	UniRef90_A0A374HKJ0	82.4	2.8e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1351336_19	97138.C820_00203	72.4	0.0000000000000112	Transcriptional	N/A
Pfam	UHGV-1351336_19	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1351336_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1351336_19	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351336_21	877415.JNJQ01000019_gene1779	68.6	0.0000000000943	N/A	N/A
structural_annotation	UHGV-1351336_21	PF09624,PF12690,NF038353,COG5633	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351336_22	428127.EUBDOL_00130	53.1	0.00000131	sequence-specific DNA binding	N/A
COG	UHGV-1351336_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1351336_22	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1351336_23	K06400	291.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1351336_23	phrog_95	301.7	0	integrase	integration and excision
UniRef90	UHGV-1351336_23	UniRef90_A0A3A9I9T1	356.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1351336_23	1378168.N510_03180	263.0	0	resolvase	N/A
Pfam	UHGV-1351336_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1351336_23	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1351336_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1351336_23	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351336_25	UniRef90_A0A847E3M6	53.5	0.0000000166	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-1351336_25	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1351336_25	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351336_26	1378168.N510_03079	100.0	3.66e-23	N/A	N/A
eggNOG-mapper	UHGV-1351336_27	1408437.JNJN01000043_gene802	159.0	0	N/A	N/A
PHROG	UHGV-1351336_28	phrog_16490	137.7	1.70006e-41	N/A	unknown function
eggNOG-mapper	UHGV-1351336_28	1408437.JNJN01000043_gene803	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351336_30	445972.ANACOL_01878	66.2	0.0000000000052	N/A	N/A
UniRef90	UHGV-1351336_31	UniRef90_A0A8D9PDT6	69.7	0.0000000000000829	Transcriptional regulatory protein	N/A
PHROG	UHGV-1351336_32	phrog_1129	80.2	1.5e-23	holin	lysis
UniRef90	UHGV-1351336_32	UniRef90_A0A1H3XEH1	110.0	1.14e-29	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-1351336_32	1226322.HMPREF1545_00069	98.6	7.3e-26	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1351336_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1351336_32	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351336_33	33035.JPJF01000090_gene94	53.9	0.0000000547	N/A	N/A
KOfam	UHGV-1351336_34	K07273	138.8	5.70006e-41	acm; lysozyme	N/A
PHROG	UHGV-1351336_34	phrog_291	117.1	1.9e-34	endolysin	lysis
UniRef90	UHGV-1351336_34	UniRef90_A0A3D2G0D9	410.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-1351336_34	877415.JNJQ01000013_gene314	166.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1351336_34	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1351336_34	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1351336_34	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1351336_34	PF01183,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351336_38	UniRef90_A0A8D9PDX6	65.1	0.00000000000746	Zinc-finger double domain protein	N/A
structural_annotation	UHGV-1351336_38	PF07238	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351336_39	1235797.C816_04179	85.9	0.00000000000000197	Chaperone of endosialidase	N/A
structural_annotation	UHGV-1351336_39	NF041249,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351336_40	UniRef90_A0A2Z4QA17	101.0	2.34e-22	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1351336_40	1235797.C816_04180	100.0	5.5e-23	N/A	N/A
structural_annotation	UHGV-1351336_40	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_41	phrog_1194	65.1	1e-18	N/A	unknown function
structural_annotation	UHGV-1351336_41	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_42	phrog_1535	72.2	4.6e-23	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1351336_42	1415775.U729_2614	80.1	0.000000000000413	phage tail tape measure protein	N/A
COG	UHGV-1351336_42	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_45	phrog_706	86.4	3.2e-25	N/A	unknown function
UniRef90	UHGV-1351336_45	UniRef90_A0A2U1BEN4	166.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1351336_45	693746.OBV_18170	154.0	1.4013e-45	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1351336_45	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1351336_45	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_46	phrog_11299	40.0	0.000000000061	N/A	unknown function
eggNOG-mapper	UHGV-1351336_46	693746.OBV_18160	130.0	4.72e-37	N/A	N/A
structural_annotation	UHGV-1351336_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1351336_47	phrog_3099	78.4	1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1351336_47	1235797.C816_04186	210.0	0	N/A	N/A
structural_annotation	UHGV-1351336_47	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A