UHGV-1351539 (vOTU-004507)

Viral Genome: UHGV-1351539

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1351539
vOTU ID	vOTU-004507
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0281545
Associated BioSample	SAMN05414935
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.53
Jumbo phage	No

Genome content
Genome length (bp)	42,402
GC content	53.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	94%
Average CDS length (bps)	512.62
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1351539_1	742738.HMPREF9460_02503	52.8	0.000000033	N/A	N/A
PHROG	UHGV-1351539_4	phrog_1770	59.3	7.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1351539_4	536233.CLO_1822	130.0	3.56e-36	N/A	N/A
structural_annotation	UHGV-1351539_4	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_7	phrog_22543	42.9	0.0000000000074	N/A	unknown function
eggNOG-mapper	UHGV-1351539_11	1232443.BAIA02000078_gene48	55.1	0.0000000753	N/A	N/A
PHROG	UHGV-1351539_12	phrog_3136	78.3	1.5e-32	N/A	unknown function
UniRef90	UHGV-1351539_12	UniRef90_A0A3D0HBD2	99.8	4.66e-24	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_12	553218.CAMRE0001_1930	50.1	0.00000392	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1351539_12	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1351539_12	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1351539_12	PF12961,NF002008,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-1351539_13	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1351539_14	phrog_5810	70.9	1.7e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351539_14	UniRef90_UPI00164D8A5B	90.5	1.65e-17	replisome organizer	N/A
eggNOG-mapper	UHGV-1351539_14	742740.HMPREF9474_03117	189.0	0	N/A	N/A
structural_annotation	UHGV-1351539_14	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_15	phrog_378	93.9	2e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351539_15	UniRef90_UPI001E43F9BA	71.2	0.00000000000111	N/A	N/A
eggNOG-mapper	UHGV-1351539_15	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-1351539_15	PF05037,NF004948	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351539_16	UniRef90_A0A2Z4QA33	241.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1351539_16	718252.FP2_01050	130.0	4.63e-35	N/A	N/A
structural_annotation	UHGV-1351539_16	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_17	phrog_124	116.1	2.8e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351539_17	UniRef90_A0A2Z4QBI4	394.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-1351539_17	445972.ANACOL_00146	227.0	0	AAA domain	N/A
Pfam	UHGV-1351539_17	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1351539_17	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1351539_17	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_18	K24213	48.0	0.00000000000013	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1351539_18	phrog_4433	85.2	5.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1351539_18	445970.ALIPUT_01221	90.1	3.53e-17	DNA-templated transcription, initiation	N/A
Pfam	UHGV-1351539_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1351539_18	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1351539_18	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_19	PF14634	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_23	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_24	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-1351539_24	PF09035,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_25	405948.SACE_5483	50.1	0.00000403	domain, Protein	N/A
Pfam	UHGV-1351539_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1351539_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1351539_25	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_26	1216932.CM240_0696	73.6	0.000000000000439	N/A	N/A
structural_annotation	UHGV-1351539_26	PF03965,MF_01819,NF012168,COG3682	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351539_27	UniRef90_A0A3D3Y0G5	138.0	1.75e-39	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1351539_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_28	476272.RUMHYD_03309	58.5	0.000000000916	N/A	N/A
structural_annotation	UHGV-1351539_28	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351539_31	UniRef90_A0A542AKK8	63.2	0.0000000308	Adhesin_P1_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_31	1298920.KI911353_gene413	140.0	8.74e-39	N/A	N/A
Pfam	UHGV-1351539_31	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-1351539_31	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1351539_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1351539_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1351539_33	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_34	K14059	132.9	3.9e-39	int; integrase	N/A
PHROG	UHGV-1351539_34	phrog_1	145.4	4.40008e-43	integrase	integration and excision
UniRef90	UHGV-1351539_34	UniRef90_UPI00195CC1EE	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1351539_34	1235835.C814_03141	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1351539_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1351539_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1351539_34	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_35	1226322.HMPREF1545_00079	111.0	2.42e-30	N/A	N/A
structural_annotation	UHGV-1351539_36	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_37	phrog_20016	195.2	0	N/A	unknown function
UniRef90	UHGV-1351539_37	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1351539_37	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1351539_37	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_38	phrog_16490	123.4	2.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1351539_38	1408437.JNJN01000043_gene803	96.7	2.4e-21	N/A	N/A
PHROG	UHGV-1351539_39	phrog_22984	66.2	7.9e-20	N/A	unknown function
PHROG	UHGV-1351539_40	phrog_21718	102.9	2.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1351539_40	397290.C810_05210	63.2	0.000000000299	N/A	N/A
PHROG	UHGV-1351539_41	phrog_3754	82.8	4.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1351539_41	476272.RUMHYD_01764	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351539_42	1384065.JAGS01000001_gene2489	52.4	0.0000000214	N/A	N/A
structural_annotation	UHGV-1351539_42	PF10723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_46	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_47	phrog_14030	145.2	3.69943e-43	N/A	unknown function
UniRef90	UHGV-1351539_47	UniRef90_R6LL81	248.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_47	1121866.AUGK01000003_gene1444	94.0	2.74e-19	amidase activity	N/A
COG	UHGV-1351539_47	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1351539_48	phrog_6918	95.2	4.1e-28	holin	lysis
UniRef90	UHGV-1351539_48	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-1351539_48	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1351539_48	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1351539_48	PF09682,TIGR01673	N/A	N/A	N/A	N/A
Pfam	UHGV-1351539_51	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1351539_51	PF07484	N/A	N/A	N/A	N/A
Pfam	UHGV-1351539_52	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1351539_52	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_53	phrog_18725	94.9	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1351539_53	1226322.HMPREF1545_00062	129.0	1.02e-35	N/A	N/A
PHROG	UHGV-1351539_54	phrog_13879	176.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1351539_54	1122919.KB905559_gene1344	164.0	1.07003e-41	N/A	N/A
structural_annotation	UHGV-1351539_54	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_56	phrog_6900	267.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1351539_56	1123312.KB904569_gene357	323.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1351539_56	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1351539_56	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_58	phrog_18646	62.3	8.2e-18	N/A	unknown function
UniRef90	UHGV-1351539_58	UniRef90_B6CXF0	71.6	0.000000000000105	Peptidase-colicin	N/A
PHROG	UHGV-1351539_59	phrog_885	74.0	1.6e-21	major tail protein	tail
UniRef90	UHGV-1351539_59	UniRef90_A0A843J9F0	212.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_59	1504822.CCNO01000012_gene492	249.0	0	N/A	N/A
structural_annotation	UHGV-1351539_59	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351539_60	UniRef90_A0A415JI88	124.0	3.48e-34	N/A	N/A
structural_annotation	UHGV-1351539_60	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_61	phrog_17977	80.4	1.5e-23	N/A	unknown function
UniRef90	UHGV-1351539_61	UniRef90_UPI00141211AB	115.0	7.02e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-1351539_61	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_63	phrog_544	132.4	2.5e-39	major head protein	head and packaging
UniRef90	UHGV-1351539_63	UniRef90_A0A1C6B5R0	591.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_63	1232453.BAIF02000011_gene3359	366.0	0	N/A	N/A
Pfam	UHGV-1351539_63	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1351539_63	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_64	phrog_194	43.3	0.0000000000059	head scaffolding protein	head and packaging
UniRef90	UHGV-1351539_64	UniRef90_A0A6B9SU02	151.0	6.99248e-43	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-1351539_64	476272.RUMHYD_01775	59.3	0.0000000347	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-1351539_64	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_65	phrog_5	82.0	9.4e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-1351539_65	UniRef90_UPI0018AA0B5A	191.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1351539_65	929506.CbC4_1219	96.7	9.08e-24	N/A	N/A
Pfam	UHGV-1351539_65	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1351539_65	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1351539_65	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_67	K11044	47.1	0.0000000000000012	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-1351539_67	phrog_595	157.4	0	head maturation protease	head and packaging
UniRef90	UHGV-1351539_67	UniRef90_A0A810PSD3	448.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1351539_67	1504822.CCNO01000013_gene286	215.0	0	cell adhesion	N/A
Pfam	UHGV-1351539_67	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1351539_67	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
NCBIFam	UHGV-1351539_67	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1351539_67	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_67	PF03496,PF04233,MF_04142,NF040688,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_68	K18454	46.3	0.00000000000052	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1351539_68	phrog_30034	72.1	1e-20	N/A	unknown function
UniRef90	UHGV-1351539_68	UniRef90_A0A1C5VT90	147.0	3.92364e-43	Chitinase A1	N/A
eggNOG-mapper	UHGV-1351539_68	1235796.C815_00903	124.0	7.08e-34	N/A	N/A
Pfam	UHGV-1351539_68	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1351539_68	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_71	phrog_37900	314.1	0	N/A	unknown function
UniRef90	UHGV-1351539_71	UniRef90_UPI001C3EA4DF	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351539_71	552398.HMPREF0866_03098	244.0	0	N/A	N/A
Pfam	UHGV-1351539_71	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1351539_71	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1351539_71	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351539_72	411471.SUBVAR_06929	310.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1351539_72	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1351539_74	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1351539_75	phrog_64	155.8	0	portal protein	head and packaging
UniRef90	UHGV-1351539_75	UniRef90_UPI001AA0B7FF	504.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1351539_75	673376.F2VHW1_9CAUD	218.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1351539_75	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1351539_75	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_76	K06909	135.5	4.9e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1351539_76	phrog_10250	163.1	0	N/A	unknown function
UniRef90	UHGV-1351539_76	UniRef90_UPI0018A99FCF	612.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1351539_76	476272.RUMHYD_01756	455.0	0	N/A	N/A
Pfam	UHGV-1351539_76	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1351539_76	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1351539_76	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1351539_76	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1351539_76	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1351539_77	K07474	105.4	9.9e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1351539_77	phrog_51	113.5	1.4e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1351539_77	UniRef90_A0A396NMY4	130.0	1.98e-36	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1351539_77	476272.RUMHYD_01754	125.0	4.3e-35	Terminase small subunit	N/A
Pfam	UHGV-1351539_77	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1351539_77	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1351539_77	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351539_78	PF10922,MF_00839	N/A	N/A	N/A	N/A