UHGV-1351562 (vOTU-024749)

Viral Genome: UHGV-1351562

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1351562
vOTU ID	vOTU-024749
Representative Genome?	Yes
Source	GVD
Original genome ID	Shkoporov_2019_SRR9161509_NODE_338_length_37091_cov_24.206934
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.74
Jumbo phage	No

Genome content
Genome length (bp)	37,091
GC content	54.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	94%
Average CDS length (bps)	648.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1351562_1	phrog_5763	66.4	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1351562_1	1345592.CBOM010000021_gene1331	63.9	0.00000000258	N/A	N/A
PHROG	UHGV-1351562_3	phrog_1281	110.4	8.5e-33	N/A	unknown function
UniRef90	UHGV-1351562_3	UniRef90_A0A291T9N2	114.0	1.62e-29	N/A	N/A
eggNOG-mapper	UHGV-1351562_3	1127692.HMPREF9075_01262	94.7	1.93e-22	N/A	N/A
Pfam	UHGV-1351562_3	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1351562_3	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351562_3	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_5	phrog_22543	48.6	0.00000000000013	N/A	unknown function
PHROG	UHGV-1351562_9	phrog_478	118.2	3.5e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1351562_9	UniRef90_R6E548	168.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1351562_9	272623.L62008	79.3	5.44e-17	N/A	N/A
KOfam	UHGV-1351562_10	K01520	138.3	5.79997e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1351562_10	phrog_135	127.0	1e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351562_10	UniRef90_UPI00164A78A3	186.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1351562_10	1282887.AUJG01000016_gene1113	158.0	0	N/A	N/A
Pfam	UHGV-1351562_10	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1351562_10	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1351562_10	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1351562_10	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351562_12	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_13	K00558	204.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1351562_13	phrog_116	258.7	0	DNA methyltransferase	other
UniRef90	UHGV-1351562_13	UniRef90_A0A0U1L2E6	592.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1351562_13	1123288.SOV_2c03860	592.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1351562_13	MTase_II_00164	81.4	1.1e-27	Type II methyltransferase	RM
Pfam	UHGV-1351562_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1351562_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1351562_13	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_14	phrog_256	315.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351562_14	UniRef90_A0A1V5XFC1	475.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1351562_14	1235793.C809_02292	232.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1351562_14	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1351562_14	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1351562_14	PF05272,MF_00016,NF005477,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_15	K02316	64.8	1.4e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1351562_15	phrog_11992	109.4	3.5e-32	N/A	unknown function
UniRef90	UHGV-1351562_15	UniRef90_R8W667	78.6	0.0000000000000101	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1351562_15	1203606.HMPREF1526_01688	78.6	0.0000000000000017	CHC2 zinc finger	N/A
PADLOC	UHGV-1351562_15	drt-UG29	50.8	0.000000000000013	DRT	DRT
Pfam	UHGV-1351562_15	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1351562_15	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1351562_15	PF01807	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_17	K03111	96.3	5.2e-28	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1351562_17	phrog_44	107.1	1.9e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351562_17	UniRef90_A0A3D0X741	109.0	4.01e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1351562_17	1392491.JIAE01000001_gene2290	98.2	3.4e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1351562_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1351562_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1351562_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1351562_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_18	phrog_1227	220.3	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351562_18	UniRef90_A0A3C0NN37	294.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351562_18	1120998.AUFC01000030_gene2216	201.0	0	N/A	N/A
Pfam	UHGV-1351562_18	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1351562_18	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1351562_18	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_19	K22299	48.7	0.000000000000077	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1351562_19	phrog_21613	83.7	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1351562_19	1007096.BAGW01000023_gene153	219.0	0	N/A	N/A
Pfam	UHGV-1351562_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1351562_21	K18959	167.0	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-1351562_21	phrog_16	176.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351562_21	UniRef90_H1CET1	527.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1351562_21	1449050.JNLE01000003_gene3908	502.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-1351562_21	mREase_IV_00005	63.0	3.8e-18	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1351562_21	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1351562_21	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1351562_21	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1351562_21	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_22	K03552	40.2	0.000000000052	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	N/A
UniRef90	UHGV-1351562_22	UniRef90_D7GXC2	134.0	3.57e-38	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-1351562_22	1232453.BAIF02000010_gene3342	97.4	4.04e-24	Recombination protein U	N/A
Pfam	UHGV-1351562_22	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-1351562_22	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351562_26	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_27	phrog_4433	84.1	5.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-1351562_27	886882.PPSC2_p0048	121.0	1.41e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1351562_27	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-1351562_28	K00390	98.9	6.7e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1351562_28	phrog_424	104.6	3.5e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1351562_28	UniRef90_UPI001D091C0C	592.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1351562_28	1291050.JAGE01000002_gene3264	317.0	0	sulfate reduction	N/A
Pfam	UHGV-1351562_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1351562_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1351562_28	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351562_29	UniRef90_UPI000845BCEE	65.5	0.00000000001	N/A	N/A
eggNOG-mapper	UHGV-1351562_29	1229751.R9QLK3_9CAUD	55.8	0.00000000894	N/A	N/A
Pfam	UHGV-1351562_29	PF05339	N/A	N/A	N/A	DUF739
KOfam	UHGV-1351562_30	K01356	136.3	3.3e-40	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1351562_30	phrog_4	133.4	1.9e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-1351562_30	UniRef90_UPI0018984762	195.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1351562_30	411473.RUMCAL_03095	167.0	0	N/A	N/A
PADLOC	UHGV-1351562_30	retron_type_VI_hth_cluster2_1	43.8	0.0000000000045	N/A	Retron
Pfam	UHGV-1351562_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1351562_30	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1351562_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1351562_30	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
Pfam	UHGV-1351562_31	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
KOfam	UHGV-1351562_32	K14059	248.5	0	int; integrase	N/A
PHROG	UHGV-1351562_32	phrog_1	217.2	0	integrase	integration and excision
UniRef90	UHGV-1351562_32	UniRef90_A0A6N9L4Z3	196.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1351562_32	1123263.AUKY01000086_gene1008	172.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1351562_32	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1351562_32	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1351562_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1351562_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1351562_32	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351562_33	UniRef90_UPI001D07B715	122.0	9.25e-32	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1351562_33	1235793.C809_00539	58.5	0.0000000391	N/A	N/A
Pfam	UHGV-1351562_33	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1351562_33	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1351562_34	K03466	147.2	9.3887e-44	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1351562_34	phrog_1358	141.6	2.79979e-42	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1351562_34	UniRef90_A0A1C5UE43	169.0	0	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-1351562_34	926569.ANT_12840	109.0	2.56e-24	PFAM cell divisionFtsK SpoIIIE	N/A
PADLOC	UHGV-1351562_34	SspH_00004	54.9	5.3e-16	SspH	SSP
Pfam	UHGV-1351562_34	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1351562_34	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1351562_34	PF01580,MF_00350,TIGR03925,COG4128	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351562_35	1519439.JPJG01000053_gene1369	59.3	0.000000277	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1351562_35	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1351562_38	K06400	199.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1351562_38	phrog_95	186.9	0	integrase	integration and excision
UniRef90	UHGV-1351562_38	UniRef90_E6UJR7	429.0	0	Resolvase domain	N/A
eggNOG-mapper	UHGV-1351562_38	697329.Rumal_3466	429.0	0	resolvase	N/A
Pfam	UHGV-1351562_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1351562_38	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1351562_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1351562_38	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_39	phrog_38	203.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1351562_39	UniRef90_A0A318EQM2	443.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1351562_39	1123263.AUKY01000015_gene1608	492.0	0	chromosome segregation	N/A
NCBIFam	UHGV-1351562_39	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1351562_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351562_39	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_40	phrog_64	197.1	0	portal protein	head and packaging
UniRef90	UHGV-1351562_40	UniRef90_R6P563	445.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1351562_40	1121866.AUGK01000003_gene1429	374.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1351562_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1351562_40	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351562_41	UniRef90_A0A3D3Y4T2	87.8	5.25e-18	Phage_Mu_F domain-containing protein	N/A
structural_annotation	UHGV-1351562_41	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_44	phrog_544	61.3	1.1e-17	major head protein	head and packaging
UniRef90	UHGV-1351562_44	UniRef90_A0A6N3FT63	125.0	1.07e-30	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1351562_44	428127.EUBDOL_01555	239.0	0	N/A	N/A
structural_annotation	UHGV-1351562_44	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351562_45	UniRef90_D7GNV9	117.0	8.2e-32	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-1351562_45	1298920.KI911353_gene2658	54.7	0.0000000431	N/A	N/A
Pfam	UHGV-1351562_45	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1351562_45	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351562_46	1298920.KI911353_gene2656	58.5	0.00000000395	N/A	N/A
structural_annotation	UHGV-1351562_48	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_49	phrog_158	63.1	5.5e-18	major tail protein	tail
UniRef90	UHGV-1351562_49	UniRef90_A0A1C6L0H9	174.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1351562_49	1232453.BAIF02000058_gene1634	90.1	3.55e-21	N/A	N/A
structural_annotation	UHGV-1351562_49	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351562_50	UniRef90_A0A847YX95	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1351562_50	469596.HMPREF9488_01311	98.2	3.45e-25	N/A	N/A
Pfam	UHGV-1351562_50	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1351562_50	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1351562_51	1121333.JMLH01000047_gene1011	61.2	0.000000000708	N/A	N/A
PHROG	UHGV-1351562_52	phrog_1535	65.2	1.6e-36	tail length tape measure protein	tail
UniRef90	UHGV-1351562_52	UniRef90_A0A173WM72	140.0	1.99e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-1351562_52	445971.ANASTE_00086	112.0	4.75e-23	phage tail tape measure protein	N/A
COG	UHGV-1351562_52	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1351562_53	phrog_1194	101.4	5.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-1351562_53	1121866.AUGK01000003_gene1438	87.4	2.3e-20	N/A	N/A
Pfam	UHGV-1351562_53	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1351562_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1351562_54	phrog_6616	211.2	0	tail protein	tail
UniRef90	UHGV-1351562_54	UniRef90_UPI00085BC306	106.0	4.1e-21	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1351562_54	946235.CAER01000065_gene2433	87.0	0.00000000000000144	N/A	N/A