UHGV-1352117 (vOTU-100282)

Viral Genome: UHGV-1352117

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1352117
vOTU ID	vOTU-100282
Representative Genome?	Yes
Source	GVD
Original genome ID	Reyes_2015_F93_T1_NODE_11_length_22531_cov_48.909213
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.48 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.42
Jumbo phage	No

Genome content
Genome length (bp)	22,531
GC content	52.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	94%
Average CDS length (bps)	782.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1352117_2	K14059	176.4	0	int; integrase	N/A
PHROG	UHGV-1352117_2	phrog_1	158.8	0	integrase	integration and excision
UniRef90	UHGV-1352117_2	UniRef90_A0A367GI93	219.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1352117_2	1507.HMPREF0262_00307	158.0	3.71064e-42	Phage integrase family	N/A
Pfam	UHGV-1352117_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1352117_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1352117_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1352117_3	1408437.JNJN01000043_gene801	97.8	1.62e-22	N/A	N/A
eggNOG-mapper	UHGV-1352117_4	1408437.JNJN01000043_gene802	121.0	6.41e-34	N/A	N/A
PHROG	UHGV-1352117_5	phrog_16490	105.9	6.2e-40	N/A	unknown function
eggNOG-mapper	UHGV-1352117_5	1408437.JNJN01000043_gene803	173.0	0	N/A	N/A
PHROG	UHGV-1352117_10	phrog_15303	74.0	1.7e-21	N/A	unknown function
KOfam	UHGV-1352117_12	K07273	166.7	0	acm; lysozyme	N/A
PHROG	UHGV-1352117_12	phrog_291	134.1	1.2e-39	endolysin	lysis
UniRef90	UHGV-1352117_12	UniRef90_UPI001D0EE7D8	252.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1352117_12	748224.HMPREF9436_00154	239.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1352117_12	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1352117_12	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1352117_12	PF01183,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-1352117_13	K10804	46.1	2e-26	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-1352117_13	PF00657	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
Pfam	UHGV-1352117_13	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-1352117_14	phrog_1067	170.1	0	minor head protein	head and packaging
UniRef90	UHGV-1352117_14	UniRef90_A0A2A7AM44	704.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1352117_14	1123263.AUKY01000068_gene489	192.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1352117_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1352117_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1352117_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1352117_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_15	phrog_33	78.0	2e-22	distal tail protein Dit	tail
UniRef90	UHGV-1352117_15	UniRef90_A0A173Z1X4	143.0	1.38e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-1352117_15	908340.HMPREF9406_2569	96.3	2.36e-21	phage tail	N/A
NCBIFam	UHGV-1352117_15	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1352117_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1352117_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_16	phrog_9959	84.5	6.6e-25	tail length tape measure protein	tail
UniRef90	UHGV-1352117_16	UniRef90_A0A2A7ALS3	811.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1352117_16	1492737.FEM08_12070	154.0	1.81e-36	tape measure	N/A
Pfam	UHGV-1352117_16	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1352117_16	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1352117_16	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1352117_16	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_19	phrog_88	93.9	1.6e-27	major tail protein	tail
UniRef90	UHGV-1352117_19	UniRef90_G9YSC5	110.0	1.14e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1352117_19	349161.Dred_2600	65.5	0.000000000387	N/A	N/A
NCBIFam	UHGV-1352117_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1352117_19	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_20	phrog_5	50.2	0.000000000000045	tail completion or Neck1 protein	connector
UniRef90	UHGV-1352117_20	UniRef90_A0A1C6FG30	131.0	1.04e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1352117_20	908340.HMPREF9406_2573	110.0	2.01e-28	N/A	N/A
structural_annotation	UHGV-1352117_20	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1352117_21	999413.HMPREF1094_02005	68.6	0.000000000000142	N/A	N/A
structural_annotation	UHGV-1352117_21	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_22	phrog_19734	95.7	4.2e-28	N/A	unknown function
UniRef90	UHGV-1352117_22	UniRef90_A0A0D8I708	79.7	1.33e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-1352117_22	349161.Dred_2602	73.9	0.00000000000000388	N/A	N/A
structural_annotation	UHGV-1352117_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_23	phrog_749	54.0	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-1352117_23	UniRef90_UPI00099504CB	52.0	0.00000205	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1352117_23	1211817.CCAT010000053_gene2133	68.9	0.0000000000000869	N/A	N/A
PHROG	UHGV-1352117_24	phrog_10	120.8	9.5e-36	major head protein	head and packaging
UniRef90	UHGV-1352117_24	UniRef90_A0A2A7B712	705.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1352117_24	1235792.C808_00086	438.0	0	Phage capsid family	N/A
Pfam	UHGV-1352117_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1352117_24	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1352117_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1352117_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1352117_24	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1352117_25	K01358	73.3	4.2e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1352117_25	phrog_94	124.9	9e-37	head maturation protease	head and packaging
UniRef90	UHGV-1352117_25	UniRef90_UPI001C0ECD60	134.0	7.85e-35	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1352117_25	1232452.BAIB02000007_gene1626	127.0	4.84e-33	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1352117_25	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1352117_25	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1352117_25	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_26	phrog_12	128.4	5e-38	portal protein	head and packaging
UniRef90	UHGV-1352117_26	UniRef90_A0A2A7B6S8	551.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1352117_26	349161.Dred_2606	262.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1352117_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1352117_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1352117_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1352117_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1352117_27	phrog_9	207.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1352117_27	UniRef90_A0A2A7ALT4	827.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1352117_27	610130.Closa_0741	513.0	0	Phage Terminase	N/A
Pfam	UHGV-1352117_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1352117_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1352117_27	PF20441,MF_04147,TIGR01547,COG4626	N/A	N/A	N/A	N/A