UHGV-1352624 (vOTU-161317)

Viral Genome: UHGV-1352624

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1352624
vOTU ID	vOTU-161317
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677816_NODE_87_length_30131_cov_760.133096
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.98 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20
Jumbo phage	No

Genome content
Genome length (bp)	30,131
GC content	54.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	84%
Average CDS length (bps)	444.26
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1352624_2	phrog_11157	347.1	0	N/A	unknown function
UniRef90	UHGV-1352624_2	UniRef90_G9YSD2	758.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-1352624_2	1235797.C816_02657	250.0	0	N/A	N/A
Pfam	UHGV-1352624_2	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-1352624_2	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-1352624_2	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1352624_2	PF09136,PF13750,MF_04116,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_3	phrog_863	49.2	0.00000000000012	tail fiber assembly	tail
Pfam	UHGV-1352624_3	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1352624_3	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_4	phrog_22773	47.0	0.00000000000037	N/A	unknown function
PHROG	UHGV-1352624_5	phrog_2310	60.5	1.5e-17	N/A	unknown function
KOfam	UHGV-1352624_6	K01448	175.3	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1352624_6	phrog_18955	380.3	0	N/A	unknown function
UniRef90	UHGV-1352624_6	UniRef90_A0A1C7FQI4	761.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1352624_6	1226322.HMPREF1545_00782	263.0	0	N/A	N/A
Pfam	UHGV-1352624_6	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1352624_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1352624_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1352624_6	PF09992,PF01510,PF18342,NF008758,NF040678,COG5632,COG4632,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_7	phrog_1129	77.4	1.1e-22	holin	lysis
UniRef90	UHGV-1352624_7	UniRef90_A0A1C7FPV3	162.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1352624_7	1226322.HMPREF1545_00069	141.0	8.89825e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1352624_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1352624_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_8	phrog_4105	82.6	3.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1352624_8	537013.CLOSTMETH_01753	84.0	1.16e-19	N/A	N/A
UniRef90	UHGV-1352624_9	UniRef90_A0A1C6JAI6	71.2	0.0000000000000178	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1352624_9	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_12	phrog_3754	102.3	4.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1352624_12	476272.RUMHYD_01764	182.0	0	N/A	N/A
PHROG	UHGV-1352624_13	phrog_21718	115.8	3e-34	N/A	unknown function
eggNOG-mapper	UHGV-1352624_13	397290.C810_05210	72.8	0.0000000000000494	N/A	N/A
PHROG	UHGV-1352624_14	phrog_22984	106.1	1.7e-31	N/A	unknown function
PHROG	UHGV-1352624_15	phrog_16490	213.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1352624_15	658655.HMPREF0988_00917	186.0	0	N/A	N/A
PHROG	UHGV-1352624_16	phrog_20016	127.9	3.6e-38	N/A	unknown function
UniRef90	UHGV-1352624_16	UniRef90_A0A285PT46	113.0	1.53e-29	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1352624_16	1485543.JMME01000025_gene2458	103.0	6.07e-26	N/A	N/A
structural_annotation	UHGV-1352624_16	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1352624_17	476272.RUMHYD_01772	51.6	0.00000431	N/A	N/A
eggNOG-mapper	UHGV-1352624_18	1226322.HMPREF1545_00079	142.0	2.07953e-42	N/A	N/A
KOfam	UHGV-1352624_19	K14059	230.1	0	int; integrase	N/A
PHROG	UHGV-1352624_19	phrog_1	210.7	0	integrase	integration and excision
UniRef90	UHGV-1352624_19	UniRef90_UPI0019585560	565.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1352624_19	1321814.HMPREF9089_00905	200.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1352624_19	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1352624_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1352624_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1352624_19	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_20	phrog_33872	60.9	5.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-1352624_20	445972.ANACOL_01858	51.6	0.00000107	N/A	N/A
UniRef90	UHGV-1352624_21	UniRef90_UPI001956EF77	218.0	0	stalk domain-containing protein	N/A
eggNOG-mapper	UHGV-1352624_21	693746.OBV_27580	106.0	1.83e-26	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-1352624_21	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
KOfam	UHGV-1352624_23	K22300	66.4	5.8e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1352624_23	phrog_4	50.7	0.000000000000042	transcriptional repressor	transcription regulation
UniRef90	UHGV-1352624_23	UniRef90_UPI001A9C6895	255.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1352624_23	445972.ANACOL_03315	136.0	6.71001e-40	N/A	N/A
Pfam	UHGV-1352624_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1352624_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1352624_23	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1352624_27	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1352624_30	K21919	78.9	5.6e-23	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1352624_30	phrog_9562	116.8	3.8e-35	N/A	unknown function
UniRef90	UHGV-1352624_30	UniRef90_A0A6N3FDD3	244.0	0	Pentapeptide repeats (8 copies)	N/A
eggNOG-mapper	UHGV-1352624_30	1232443.BAIA02000078_gene49	164.0	0	Pentapeptide repeat protein	N/A
Pfam	UHGV-1352624_30	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1352624_30	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1352624_30	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1352624_30	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1352624_31	537013.CLOSTMETH_01718	47.4	0.00000163	N/A	N/A
structural_annotation	UHGV-1352624_32	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_33	phrog_298	89.2	1.1e-26	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1352624_33	UniRef90_UPI001C97FE83	92.8	4.28e-20	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1352624_33	1218075.BAYA01000003_gene606	113.0	1.15e-28	N/A	N/A
structural_annotation	UHGV-1352624_33	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_34	phrog_561	162.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1352624_34	UniRef90_A0A174RC35	451.0	0	RecT family	N/A
eggNOG-mapper	UHGV-1352624_34	1215092.PA6_009_00610	172.0	0	N/A	N/A
Pfam	UHGV-1352624_34	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1352624_34	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1352624_35	K03111	154.0	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1352624_35	phrog_44	154.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1352624_35	UniRef90_A0A174RD30	262.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1352624_35	411467.BACCAP_02389	220.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1352624_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1352624_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1352624_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1352624_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1352624_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1352624_36	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_37	phrog_190	128.5	4.2e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1352624_37	UniRef90_A0A6A8VJ62	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-1352624_37	1226322.HMPREF1545_00295	147.0	7.9874e-44	N/A	N/A
Pfam	UHGV-1352624_37	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1352624_37	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_39	phrog_757	189.9	0	DNA methyltransferase	other
UniRef90	UHGV-1352624_39	UniRef90_UPI0018997BA1	434.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1352624_39	742733.HMPREF9469_01835	281.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1352624_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1352624_39	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_40	phrog_10714	44.3	0.0000000000025	N/A	unknown function
UniRef90	UHGV-1352624_40	UniRef90_UPI001C3A10B1	78.2	3.44e-16	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1352624_40	1226322.HMPREF1545_00023	61.2	0.000000000284	N/A	N/A
PHROG	UHGV-1352624_41	phrog_25732	60.7	1.7e-18	N/A	unknown function
UniRef90	UHGV-1352624_41	UniRef90_UPI001898061F	164.0	0	N/A	N/A
PHROG	UHGV-1352624_42	phrog_1384	128.2	5.3e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1352624_42	428125.CLOLEP_01816	295.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1352624_42	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1352624_43	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_44	phrog_37865	90.7	1.7e-29	N/A	unknown function
PHROG	UHGV-1352624_50	phrog_8	64.4	2.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1352624_50	UniRef90_UPI001899C2C3	145.0	2.10195e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1352624_50	1378168.N510_02302	64.7	0.000000000000509	Transcriptional	N/A
Pfam	UHGV-1352624_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1352624_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1352624_50	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1352624_51	K22300	50.1	0.00000000000005	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1352624_51	UniRef90_U2R0P8	291.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1352624_51	1226322.HMPREF1545_02890	291.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1352624_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1352624_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1352624_53	UniRef90_UPI0018A8F249	258.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1352624_53	1235790.C805_00037	133.0	5.13e-38	N/A	N/A
structural_annotation	UHGV-1352624_53	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1352624_54	K06909	125.1	6.7e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1352624_54	phrog_10250	167.8	0	N/A	unknown function
UniRef90	UHGV-1352624_54	UniRef90_UPI0018A99FCF	806.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1352624_54	476272.RUMHYD_01756	469.0	0	N/A	N/A
Pfam	UHGV-1352624_54	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1352624_54	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1352624_54	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1352624_54	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_55	phrog_64	163.9	0	portal protein	head and packaging
UniRef90	UHGV-1352624_55	UniRef90_UPI0018A8A301	828.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1352624_55	673376.F2VHW1_9CAUD	223.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1352624_55	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1352624_55	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_56	phrog_2468	117.8	3e-35	head morphogenesis	head and packaging
UniRef90	UHGV-1352624_56	UniRef90_UPI0018AAFC07	635.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1352624_56	1504822.CCNO01000013_gene286	166.0	7.70714e-44	cell adhesion	N/A
Pfam	UHGV-1352624_56	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1352624_56	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1352624_56	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1352624_56	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1352624_57	phrog_5	50.2	0.000000000000057	tail completion or Neck1 protein	connector
UniRef90	UHGV-1352624_57	UniRef90_UPI0018AA0B5A	187.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1352624_57	1158602.I590_02569	83.6	3.44e-19	N/A	N/A
Pfam	UHGV-1352624_57	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like