UHGV-1353236 (vOTU-006682)

Viral Genome: UHGV-1353236

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1353236
vOTU ID	vOTU-006682
Representative Genome?	Yes
Source	GVD
Original genome ID	SRR7892482_NODE_2_length_42735_cov_131.220642
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.7
Jumbo phage	No

Genome content
Genome length (bp)	42,680
GC content	52.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	95%
Average CDS length (bps)	708.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1353236_2	1235792.C808_01244	177.0	0	N/A	N/A
Pfam	UHGV-1353236_2	PF04448	N/A	N/A	N/A	DUF551
Pfam	UHGV-1353236_6	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
COG	UHGV-1353236_6	COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353236_6	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_10	phrog_1206	47.0	0.00000000000046	terminase small subunit	head and packaging
KOfam	UHGV-1353236_11	K06909	128.5	6.7e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1353236_11	phrog_979	130.7	1.50001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-1353236_11	UniRef90_A0A810Q5R0	608.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1353236_11	1410650.JHWL01000003_gene2834	595.0	0	N/A	N/A
Pfam	UHGV-1353236_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1353236_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1353236_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_12	phrog_156	313.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1353236_12	1410650.JHWL01000003_gene2833	568.0	0	N/A	N/A
structural_annotation	UHGV-1353236_12	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1353236_13	K07584	59.7	6e-17	N/A	N/A
PHROG	UHGV-1353236_13	phrog_4478	65.2	8.9e-19	peptidase	other
UniRef90	UHGV-1353236_13	UniRef90_UPI001C027204	65.5	0.0000000000159	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1353236_13	718252.FP2_29210	57.4	0.0000000357	Cysteine protease Prp	N/A
Pfam	UHGV-1353236_13	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1353236_13	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353236_13	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_14	phrog_13908	111.8	4.7e-33	N/A	unknown function
PHROG	UHGV-1353236_15	phrog_1357	197.5	0	major head protein	head and packaging
UniRef90	UHGV-1353236_15	UniRef90_A0A2V2CFL5	507.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1353236_15	1410650.JHWL01000003_gene2830	198.0	0	N/A	N/A
NCBIFam	UHGV-1353236_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1353236_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_17	phrog_12105	133.6	8.20001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1353236_17	1519439.JPJG01000060_gene1891	56.6	0.0000000157	N/A	N/A
PHROG	UHGV-1353236_18	phrog_511	245.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1353236_18	1410650.JHWL01000003_gene2827	347.0	0	N/A	N/A
structural_annotation	UHGV-1353236_18	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353236_20	1410650.JHWL01000003_gene2815	114.0	1.37e-25	N/A	N/A
PHROG	UHGV-1353236_21	phrog_22978	620.8	0	N/A	unknown function
UniRef90	UHGV-1353236_21	UniRef90_A0A2V2FDI6	316.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1353236_21	1226322.HMPREF1545_00787	109.0	2.28e-20	N/A	N/A
Pfam	UHGV-1353236_21	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1353236_21	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-1353236_26	phrog_17147	418.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1353236_26	411459.RUMOBE_01720	598.0	0	N/A	N/A
KOfam	UHGV-1353236_27	K08640	99.5	6e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1353236_27	phrog_894	53.8	0.0000000000000031	endolysin	lysis
UniRef90	UHGV-1353236_27	UniRef90_R5EEL2	173.0	0	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-1353236_27	931626.Awo_c26840	124.0	7.05e-33	Peptidase M15	N/A
Pfam	UHGV-1353236_27	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-1353236_27	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1353236_27	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353236_27	PF05951,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_28	phrog_4105	102.5	2.5e-30	N/A	unknown function
UniRef90	UHGV-1353236_28	UniRef90_A0A8D9UHA9	129.0	4.13e-37	Holin protein	N/A
eggNOG-mapper	UHGV-1353236_28	742733.HMPREF9469_05011	139.0	8.80996e-42	N/A	N/A
PHROG	UHGV-1353236_29	phrog_881	90.8	7.5e-27	holin	lysis
UniRef90	UHGV-1353236_29	UniRef90_A0A4Q7P349	93.6	8.78e-24	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-1353236_29	742740.HMPREF9474_02251	94.7	5.56e-25	Putative phage holin Dp-1	N/A
Pfam	UHGV-1353236_29	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1353236_29	PF16938	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353236_30	PF01047,MF_00620,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_31	phrog_3754	85.7	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1353236_31	476272.RUMHYD_01764	138.0	9.60002e-41	N/A	N/A
PHROG	UHGV-1353236_32	phrog_21718	80.7	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1353236_32	397290.C810_05210	79.0	6.68e-17	N/A	N/A
PHROG	UHGV-1353236_33	phrog_22984	56.5	4.6e-16	N/A	unknown function
PHROG	UHGV-1353236_34	phrog_16490	75.2	4e-22	N/A	unknown function
UniRef90	UHGV-1353236_34	UniRef90_A0A7M1RZU0	88.2	4.51e-17	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-1353236_34	476272.RUMHYD_01770	102.0	5.83e-24	N/A	N/A
PHROG	UHGV-1353236_35	phrog_20016	159.6	0	N/A	unknown function
UniRef90	UHGV-1353236_35	UniRef90_A0A2Z4QB67	143.0	2.45998e-41	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1353236_35	1226322.HMPREF1545_00077	139.0	1.44e-40	N/A	N/A
structural_annotation	UHGV-1353236_35	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353236_36	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1353236_37	K14059	127.8	1.1e-37	int; integrase	N/A
PHROG	UHGV-1353236_37	phrog_1	133.1	2.7e-39	integrase	integration and excision
UniRef90	UHGV-1353236_37	UniRef90_A0A3D3Y5E0	299.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1353236_37	693746.OBV_41260	222.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1353236_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1353236_37	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1353236_37	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1353236_38	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1353236_38	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353236_39	471855.Shel_04260	60.5	0.0000000378	dextransucrase activity	N/A
COG	UHGV-1353236_39	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-1353236_41	K22300	45.6	0.0000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1353236_41	UniRef90_A0A354UTE4	120.0	9.11e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1353236_41	1095750.HMPREF9970_1686	76.6	3.34e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1353236_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353236_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353236_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_47	phrog_4292	69.7	2.4e-20	N/A	unknown function
UniRef90	UHGV-1353236_47	UniRef90_I7J4K2	53.9	0.0000000205	Phage related protein	N/A
eggNOG-mapper	UHGV-1353236_47	1118063.I7J6R1_9CAUD	53.9	0.00000000344	N/A	N/A
structural_annotation	UHGV-1353236_48	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
KOfam	UHGV-1353236_50	K19171	98.2	7.1e-29	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1353236_50	phrog_77	239.4	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353236_50	UniRef90_A0A3A9HXV3	433.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1353236_50	1382358.JHVN01000024_gene1691	339.0	0	N/A	N/A
Pfam	UHGV-1353236_50	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1353236_50	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1353236_50	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_51	phrog_862	58.0	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1353236_51	1203606.HMPREF1526_00310	143.0	2.07e-40	N/A	N/A
structural_annotation	UHGV-1353236_51	PF05037,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-1353236_52	K06167	61.4	1.4e-17	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1353236_52	phrog_392	184.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-1353236_52	UniRef90_UPI00195A5026	265.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1353236_52	1118054.CAGW01000106_gene3694	185.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1353236_52	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1353236_52	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1353236_52	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_53	phrog_15768	57.1	4.3e-16	N/A	unknown function
Pfam	UHGV-1353236_53	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1353236_53	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1353236_53	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1353236_56	phrog_9298	66.4	3e-19	radical SAM domain protein	other
UniRef90	UHGV-1353236_56	UniRef90_A0A841L4D7	283.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-1353236_56	742817.HMPREF9449_01796	275.0	0	radical SAM domain protein	N/A
COG	UHGV-1353236_56	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1353236_56	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A