UHGV-1354101 (vOTU-080505)

Viral Genome: UHGV-1354101

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1354101
vOTU ID	vOTU-080505
Representative Genome?	Yes
Source	GVD
Original genome ID	Shkoporov_2018_SRR6128101_NODE_56_length_41241_cov_59.582965
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.34 (High-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.59
Jumbo phage	No

Genome content
Genome length (bp)	41,241
GC content	58.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	651.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1354101_1	K10062	42.8	0.0000000000036	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-1354101_1	phrog_6320	41.8	0.000000000011	tail fiber protein	tail
eggNOG-mapper	UHGV-1354101_1	1519439.JPJG01000060_gene1892	60.1	0.000000219	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1354101_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1354101_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1354101_2	phrog_37900	44.1	0.0000000000018	N/A	unknown function
UniRef90	UHGV-1354101_2	UniRef90_R5IRZ6	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-1354101_2	1519439.JPJG01000060_gene1894	234.0	0	N/A	N/A
Pfam	UHGV-1354101_2	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1354101_2	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1354101_2	PF19789,PF13620,NF033708	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_3	phrog_937	62.9	6e-18	hemolysin	other
eggNOG-mapper	UHGV-1354101_3	1519439.JPJG01000023_gene533	79.7	3.1e-18	N/A	N/A
PHROG	UHGV-1354101_5	phrog_918	128.1	2e-38	N/A	unknown function
UniRef90	UHGV-1354101_5	UniRef90_UPI000F79A1D5	129.0	2.71e-37	N/A	N/A
eggNOG-mapper	UHGV-1354101_5	632112.C1KFI4_9CAUD	131.0	2.49e-38	N/A	N/A
Pfam	UHGV-1354101_5	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1354101_5	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_6	phrog_13256	63.0	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1354101_6	1226322.HMPREF1545_00166	67.4	0.0000000000000797	N/A	N/A
PHROG	UHGV-1354101_7	phrog_14030	144.2	7.80523e-43	N/A	unknown function
UniRef90	UHGV-1354101_7	UniRef90_R6LL81	243.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1354101_7	1121866.AUGK01000003_gene1444	95.1	1.08e-19	amidase activity	N/A
COG	UHGV-1354101_7	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1354101_8	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_10	phrog_16490	61.7	1.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-1354101_10	641112.ACOK01000103_gene525	55.5	0.000000835	N/A	N/A
structural_annotation	UHGV-1354101_11	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354101_12	UniRef90_A0A7M1RTM1	75.9	0.0000000000000446	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1354101_12	1378168.N510_03079	67.4	0.0000000000278	N/A	N/A
KOfam	UHGV-1354101_13	K14059	208.2	0	int; integrase	N/A
PHROG	UHGV-1354101_13	phrog_1	198.6	0	integrase	integration and excision
UniRef90	UHGV-1354101_13	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1354101_13	1507.HMPREF0262_00307	200.0	0	Phage integrase family	N/A
Pfam	UHGV-1354101_13	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1354101_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1354101_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1354101_13	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1354101_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354101_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1354101_14	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_16	phrog_5783	280.7	0	N/A	unknown function
UniRef90	UHGV-1354101_16	UniRef90_A0A1C7FL48	337.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-1354101_16	445971.ANASTE_00686	261.0	0	NYN domain	N/A
Pfam	UHGV-1354101_16	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-1354101_16	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-1354101_16	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-1354101_18	K22300	56.0	8.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1354101_18	phrog_8	48.3	0.00000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-1354101_18	UniRef90_E2ZIF0	115.0	1.16e-30	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1354101_18	748224.HMPREF9436_01444	115.0	1.94e-31	N/A	N/A
Pfam	UHGV-1354101_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354101_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1354101_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354101_21	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354101_24	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354101_25	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_29	phrog_424	77.0	2.3e-22	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1354101_29	445972.ANACOL_01819	498.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1354101_29	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1354101_29	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354101_30	UniRef90_UPI000E2F27AF	52.8	0.00000226	N/A	N/A
Pfam	UHGV-1354101_30	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1354101_30	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_31	phrog_3136	136.3	9.99995e-41	N/A	unknown function
UniRef90	UHGV-1354101_31	UniRef90_A0A843H9M8	94.7	6.38e-21	ASCH domain-containing protein	N/A
COG	UHGV-1354101_31	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1354101_31	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_32	phrog_38832	70.8	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1354101_32	665956.HMPREF1032_03087	124.0	1.21e-34	N/A	N/A
PHROG	UHGV-1354101_33	phrog_38832	66.9	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1354101_33	665956.HMPREF1032_03087	64.7	0.0000000000435	N/A	N/A
structural_annotation	UHGV-1354101_33	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_38	phrog_190	104.9	7.7e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354101_38	UniRef90_UPI0006C2AC63	131.0	3.79e-36	N/A	N/A
eggNOG-mapper	UHGV-1354101_38	1226322.HMPREF1545_00295	119.0	3.34e-32	N/A	N/A
Pfam	UHGV-1354101_38	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1354101_38	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354101_40	PF10013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354101_43	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_44	phrog_3584	115.2	5e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1354101_44	537013.CLOSTMETH_02141	67.4	0.0000000000641	N/A	N/A
structural_annotation	UHGV-1354101_44	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_45	phrog_606	68.5	1.1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1354101_45	UniRef90_UPI001F487344	123.0	3.18e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1354101_45	397290.C810_05185	124.0	3.21e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-1354101_45	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1354101_45	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1354101_46	K06909	146.7	2.00386e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1354101_46	phrog_979	134.8	3.59994e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1354101_46	UniRef90_A0A810Q5R0	643.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1354101_46	1410650.JHWL01000003_gene2834	642.0	0	N/A	N/A
Pfam	UHGV-1354101_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1354101_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1354101_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_47	phrog_511	243.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1354101_47	1410650.JHWL01000003_gene2827	323.0	0	N/A	N/A
structural_annotation	UHGV-1354101_47	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1354101_48	537007.BLAHAN_05255	62.0	0.00000019	N/A	N/A
PHROG	UHGV-1354101_51	phrog_156	290.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1354101_51	1410650.JHWL01000003_gene2833	538.0	0	N/A	N/A
structural_annotation	UHGV-1354101_51	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_52	phrog_13908	149.6	1.96182e-44	N/A	unknown function
eggNOG-mapper	UHGV-1354101_52	1410650.JHWL01000003_gene2831	105.0	7.11e-24	N/A	N/A
PHROG	UHGV-1354101_53	phrog_1357	217.6	0	major head protein	head and packaging
UniRef90	UHGV-1354101_53	UniRef90_A0A2V2CFL5	398.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1354101_53	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
Pfam	UHGV-1354101_53	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1354101_53	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1354101_53	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1354101_55	phrog_12105	122.5	2.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-1354101_55	1519439.JPJG01000060_gene1891	70.1	0.0000000000000989	N/A	N/A
UniRef90	UHGV-1354101_56	UniRef90_R5DCX9	176.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1354101_56	1410650.JHWL01000003_gene2815	128.0	3.62e-30	N/A	N/A
PHROG	UHGV-1354101_57	phrog_22978	124.4	4.19997e-41	N/A	unknown function
eggNOG-mapper	UHGV-1354101_57	1408437.JNJN01000039_gene389	471.0	0	heme binding	N/A
Pfam	UHGV-1354101_57	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1354101_57	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-1354101_57	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1354101_58	PF01835,NF005176,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-1354101_59	K16628	122.8	1.2e-36	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1354101_59	phrog_819	115.9	0	tail protein	tail
eggNOG-mapper	UHGV-1354101_59	1232443.BAIA02000078_gene14	83.2	0.00000000000000673	nuclear chromosome segregation	N/A
Pfam	UHGV-1354101_59	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1354101_59	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A