UHGV-1354543 (vOTU-054490)

Viral Genome: UHGV-1354543

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1354543
vOTU ID	vOTU-054490
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-4423844
Associated BioSample	SAMN02334041
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9785
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.16
Jumbo phage	No

Genome content
Genome length (bp)	48,236
GC content	45.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	88%
Average CDS length (bps)	630.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1354543_1	phrog_186	43.4	0.0000000000057	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
NCBIFam	UHGV-1354543_1	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1354543_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
eggNOG-mapper	UHGV-1354543_3	1540092.A0A0A0RSY9_9CAUD	51.6	0.00000521	transferase activity, transferring alkyl or aryl (other than methyl) groups	N/A
PHROG	UHGV-1354543_4	phrog_424	169.4	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1354543_4	UniRef90_UPI0004A0D626	315.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1354543_4	1610833.A0A0E3T7R2_9CAUD	261.0	0	methyltransferase activity	N/A
PADLOC	UHGV-1354543_4	SspD_00001	57.1	7.1e-16	SspD	SSP
structural_annotation	UHGV-1354543_4	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_5	phrog_12728	149.6	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-1354543_5	742765.HMPREF9457_02125	68.6	0.000000000000244	N/A	N/A
UniRef90	UHGV-1354543_7	UniRef90_A0A6N7WVF3	57.8	0.0000000601	Restriction endonuclease subunit S	N/A
KOfam	UHGV-1354543_15	K01160	59.1	1.3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1354543_15	phrog_140	133.7	9.39999e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354543_15	UniRef90_A0A316S9J1	145.0	6.13068e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1354543_15	743719.PaelaDRAFT_5642	125.0	3.12e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1354543_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1354543_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1354543_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1354543_16	K03111	55.7	0.0000000000000014	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1354543_16	phrog_44	59.1	1.3e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354543_16	UniRef90_R6WGR4	252.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1354543_16	546268.NEISUBOT_05135	65.9	0.00000000000549	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1354543_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1354543_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1354543_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1354543_16	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_21	phrog_3754	69.7	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1354543_21	397290.C810_05204	58.2	0.0000000113	N/A	N/A
structural_annotation	UHGV-1354543_22	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1354543_24	K06909	88.9	5.8e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1354543_24	phrog_2	160.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1354543_24	UniRef90_UPI001D00EC11	401.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1354543_24	585503.HMPREF7545_1731	412.0	0	Terminase-like family	N/A
Pfam	UHGV-1354543_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1354543_24	COG5323	N/A	N/A	Phage large terminase packaging protein	N/A
PHROG	UHGV-1354543_26	phrog_332	432.6	0	head-tail adaptor	connector
UniRef90	UHGV-1354543_26	UniRef90_UPI001F3F9DD9	547.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1354543_26	568816.Acin_1834	602.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1354543_26	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1354543_26	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_27	phrog_528	105.5	1.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-1354543_27	1401067.HMPREF0872_06805	94.7	1.69e-23	N/A	N/A
PHROG	UHGV-1354543_28	phrog_458	149.4	2.94273e-44	protease	other
eggNOG-mapper	UHGV-1354543_28	568816.Acin_1832	99.8	4.79e-23	N/A	N/A
PHROG	UHGV-1354543_29	phrog_212	205.6	0	major head protein	head and packaging
UniRef90	UHGV-1354543_29	UniRef90_A0A6J5KPX9	216.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1354543_29	568816.Acin_1831	350.0	0	N/A	N/A
Pfam	UHGV-1354543_29	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1354543_29	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_30	phrog_427	61.2	1.8e-17	N/A	unknown function
structural_annotation	UHGV-1354543_30	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_31	phrog_394	153.2	1.4013e-45	tail protein	tail
UniRef90	UHGV-1354543_31	UniRef90_A0A0U1KW64	124.0	2.58e-32	N/A	N/A
eggNOG-mapper	UHGV-1354543_31	1123288.SOV_1c10710	124.0	4.33e-33	N/A	N/A
structural_annotation	UHGV-1354543_31	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_32	phrog_376	602.6	0	tail protein	tail
UniRef90	UHGV-1354543_32	UniRef90_A0A0U1KV93	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-1354543_32	568816.Acin_1828	668.0	0	N/A	N/A
Pfam	UHGV-1354543_32	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1354543_32	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_33	phrog_308	106.6	2e-31	internal virion protein	head and packaging
structural_annotation	UHGV-1354543_33	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_34	phrog_418	130.8	3e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1354543_34	568816.Acin_1826	105.0	2.74e-25	N/A	N/A
structural_annotation	UHGV-1354543_34	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_35	phrog_10475	49.3	0.00000000000004	endolysin	lysis
UniRef90	UHGV-1354543_35	UniRef90_A0A1Q6RQM5	1091.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1354543_35	1123288.SOV_2c10740	150.0	3.09e-35	N/A	N/A
Pfam	UHGV-1354543_35	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-1354543_35	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_36	phrog_9880	536.8	0	N/A	unknown function
UniRef90	UHGV-1354543_36	UniRef90_A0A1Q6RQR6	4064.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1354543_36	1123288.SOV_1c10750	185.0	1.00893e-43	N/A	N/A
PHROG	UHGV-1354543_38	phrog_1640	54.2	8.2e-17	tail protein	tail
eggNOG-mapper	UHGV-1354543_38	1115515.EV102420_06_00490	67.8	0.00000000679	N/A	N/A
structural_annotation	UHGV-1354543_38	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354543_39	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_40	phrog_2837	54.4	0.0000000000000023	tail protein	tail
UniRef90	UHGV-1354543_40	UniRef90_A0A1Q6R2G9	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1354543_40	1286631.X805_38770	55.1	0.000000668	N/A	N/A
Pfam	UHGV-1354543_40	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1354543_40	PF14301,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_41	phrog_4105	84.9	6.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1354543_41	537013.CLOSTMETH_01753	79.3	1.04e-17	N/A	N/A
eggNOG-mapper	UHGV-1354543_43	1392502.JNIO01000008_gene1280	230.0	0	N/A	N/A
structural_annotation	UHGV-1354543_43	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354543_47	UniRef90_A0A316S6W0	102.0	4.35e-27	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1354543_47	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
COG	UHGV-1354543_47	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1354543_47	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354543_52	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354543_53	UniRef90_A0A7M1RS47	88.6	1.65e-19	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1354543_53	1378168.N510_03079	57.0	0.00000014	N/A	N/A
KOfam	UHGV-1354543_54	K14059	127.4	1.9e-37	int; integrase	N/A
PHROG	UHGV-1354543_54	phrog_1	138.8	5.19994e-41	integrase	integration and excision
UniRef90	UHGV-1354543_54	UniRef90_R6X1Y3	677.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1354543_54	1123250.KB908381_gene1631	332.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1354543_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1354543_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1354543_54	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1354543_56	K18830	68.3	1.6e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1354543_56	phrog_8	54.5	0.0000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1354543_56	UniRef90_R6X1Y8	213.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1354543_56	1151292.QEW_0725	94.7	1.73e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1354543_56	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1354543_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1354543_56	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_59	phrog_6058	77.3	1.1e-22	N/A	unknown function
UniRef90	UHGV-1354543_59	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1354543_59	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-1354543_59	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354543_60	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_61	phrog_14367	53.7	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-1354543_61	UniRef90_R6WTN1	173.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-1354543_61	397291.C804_02419	49.3	0.00000615	LysM domain	N/A
Pfam	UHGV-1354543_61	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1354543_61	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1354543_61	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_63	phrog_434	335.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354543_63	UniRef90_R6WGP6	621.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1354543_63	706434.HMPREF9429_00551	359.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1354543_63	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1354543_63	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1354543_63	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1354543_63	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354543_64	UniRef90_R6WLK2	131.0	3.11e-38	Conserved domain protein	N/A
Pfam	UHGV-1354543_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354543_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1354543_64	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1354543_65	K07455	202.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1354543_65	phrog_148	211.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354543_65	UniRef90_R6XVK6	364.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1354543_65	431943.CKL_1895	202.0	0	RecT family	N/A
Pfam	UHGV-1354543_65	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1354543_65	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1354543_65	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1354543_65	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1354543_67	phrog_5968	143.6	1.19951e-42	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354543_67	UniRef90_A0A7T4G8D3	127.0	2.56e-33	Phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1354543_67	1033737.CAEV01000029_gene310	125.0	6.61e-33	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1354543_67	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1354543_67	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1354543_67	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1354543_67	PF09681,TIGR01714,COG1321	N/A	N/A	N/A	N/A