UHGV-1354695 (vOTU-054506)

Viral Genome: UHGV-1354695

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1354695
vOTU ID	vOTU-054506
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677796_NODE_49_length_35221_cov_15.605613
Associated BioSample	SAMN06019319
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.72
Jumbo phage	No

Genome content
Genome length (bp)	35,166
GC content	58.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	89%
Average CDS length (bps)	498.24
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1354695_1	phrog_581	330.7	0	minor head protein	head and packaging
UniRef90	UHGV-1354695_1	UniRef90_A0A417EY47	419.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1354695_1	645991.Sgly_0338	405.0	0	N/A	N/A
Pfam	UHGV-1354695_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1354695_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354695_1	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_2	phrog_533	317.4	0	portal protein	head and packaging
UniRef90	UHGV-1354695_2	UniRef90_A0A417EXF7	712.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1354695_2	411490.ANACAC_00782	421.0	0	N/A	N/A
structural_annotation	UHGV-1354695_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1354695_3	K06909	382.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1354695_3	phrog_3717	139.2	2.29995e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1354695_3	UniRef90_UPI0009E54162	715.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1354695_3	665956.HMPREF1032_02957	578.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1354695_3	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1354695_3	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1354695_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1354695_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1354695_3	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_4	phrog_2412	101.8	5.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1354695_4	742738.HMPREF9460_02504	143.0	1.47977e-42	N/A	N/A
eggNOG-mapper	UHGV-1354695_5	693746.OBV_25230	196.0	0	N/A	N/A
structural_annotation	UHGV-1354695_5	PF06530,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354695_6	PF19070	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_10	phrog_924	51.3	0.000000000000022	N/A	unknown function
UniRef90	UHGV-1354695_10	UniRef90_A0A413FXK7	106.0	2.43e-28	N/A	N/A
Pfam	UHGV-1354695_10	PF04448	N/A	N/A	N/A	DUF551
Pfam	UHGV-1354695_12	PF12773	N/A	N/A	Double zinc ribbon	DZR
KOfam	UHGV-1354695_17	K01160	45.3	0.0000000000022	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1354695_17	phrog_4632	54.6	9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354695_17	UniRef90_A0A7X8IB41	116.0	3.55e-31	RusA family crossover junction endodeoxyribonuclease	N/A
structural_annotation	UHGV-1354695_17	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_18	phrog_15768	51.4	0.000000000000008	N/A	unknown function
UniRef90	UHGV-1354695_18	UniRef90_A0A1C6J8D5	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-1354695_18	1236514.BAKL01000051_gene3707	53.1	0.00000683	N/A	N/A
Pfam	UHGV-1354695_18	PF19808	N/A	N/A	N/A	DUF6291
NCBIFam	UHGV-1354695_18	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1354695_18	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1354695_19	K03111	140.4	1.99993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1354695_19	phrog_44	134.0	1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354695_19	UniRef90_A0A810QFR8	221.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1354695_19	1007096.BAGW01000023_gene151	208.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1354695_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1354695_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1354695_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1354695_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1354695_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_20	phrog_7370	59.7	4.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354695_20	UniRef90_UPI001C122365	142.0	1.08993e-41	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1354695_20	698758.AXY_01930	54.7	0.0000000519	HNH nucleases	N/A
Pfam	UHGV-1354695_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1354695_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1354695_21	phrog_1389	73.2	3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1354695_21	1347392.CCEZ01000060_gene3269	96.7	1.61e-24	N/A	N/A
structural_annotation	UHGV-1354695_21	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_22	phrog_155	96.5	3.5e-28	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354695_22	UniRef90_A0A1C6J8G0	253.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-1354695_22	1268072.PSAB_05935	173.0	0	ERF superfamily	N/A
Pfam	UHGV-1354695_22	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1354695_22	PF04404,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354695_24	UniRef90_A0A1Y4W1Z0	126.0	2.81e-34	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1354695_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_25	phrog_22529	94.0	7.1e-28	N/A	unknown function
UniRef90	UHGV-1354695_25	UniRef90_UPI00164E6E61	161.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1354695_25	693746.OBV_25450	149.0	2.56998e-42	3D domain	N/A
Pfam	UHGV-1354695_25	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1354695_25	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1354695_25	PF06725,MF_02071,NF040675,COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354695_28	UniRef90_A0A7G5N293	50.8	0.000000567	XRE family transcriptional regulator	N/A
Pfam	UHGV-1354695_28	PF08667	N/A	N/A	BetR domain	BetR
KOfam	UHGV-1354695_29	K01356	81.0	2.3e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1354695_29	phrog_4	113.2	2.7e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-1354695_29	UniRef90_A0A4D7AS91	263.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1354695_29	693746.OBV_01960	236.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1354695_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1354695_29	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1354695_29	COG0864	N/A	N/A	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	N/A
structural_annotation	UHGV-1354695_29	PF00717,PF01381,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_30	phrog_374	214.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1354695_30	UniRef90_A0A0R1VMU2	182.0	0	Pathogenesis-related transcriptional factor and ERF protein	N/A
eggNOG-mapper	UHGV-1354695_30	511437.Lbuc_1541	175.0	0	N/A	N/A
AcrCatalog	UHGV-1354695_30	cluster_5564	67.4	2.4e-16	NA	N/A
structural_annotation	UHGV-1354695_30	PF17375	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1354695_31	1160721.RBI_I00206	75.9	1.08e-17	N/A	N/A
structural_annotation	UHGV-1354695_31	PF10723	N/A	N/A	N/A	N/A
KOfam	UHGV-1354695_32	K06400	281.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1354695_32	phrog_95	306.9	0	integrase	integration and excision
UniRef90	UHGV-1354695_32	UniRef90_A0A810Q5V8	540.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1354695_32	525254.HMPREF0072_1329	302.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1354695_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1354695_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1354695_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1354695_32	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354695_33	PF20124	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354695_34	PF01402,NF041793,COG4877	N/A	N/A	N/A	N/A
Pfam	UHGV-1354695_36	PF03670	N/A	N/A	Uncharacterised protein family (UPF0184)	UPF0184
PHROG	UHGV-1354695_37	phrog_13890	74.5	8.4e-22	N/A	unknown function
UniRef90	UHGV-1354695_37	UniRef90_UPI0018A94567	92.0	6.56e-23	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-1354695_37	742735.HMPREF9467_01848	90.1	6.36e-23	N/A	N/A
structural_annotation	UHGV-1354695_37	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
KOfam	UHGV-1354695_38	K19370	48.5	0.000000000000085	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1354695_38	phrog_10292	91.8	3.9e-27	N/A	unknown function
UniRef90	UHGV-1354695_38	UniRef90_UPI0006CF2E4A	106.0	7.37e-28	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1354695_38	1232453.BAIF02000066_gene2042	91.3	7.6e-22	TM2 domain	N/A
Pfam	UHGV-1354695_38	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1354695_38	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1354695_38	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_39	phrog_13890	66.1	3.7e-19	N/A	unknown function
UniRef90	UHGV-1354695_39	UniRef90_UPI0008F8D321	66.6	0.000000000000427	N/A	N/A
eggNOG-mapper	UHGV-1354695_39	1507.HMPREF0262_00298	61.6	0.00000000000531	N/A	N/A
structural_annotation	UHGV-1354695_39	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354695_40	UniRef90_A0A1C7FKE8	54.3	0.00000000817	Arc domain-containing protein	N/A
KOfam	UHGV-1354695_42	K08640	102.9	5e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1354695_42	phrog_894	105.0	7.7e-31	endolysin	lysis
UniRef90	UHGV-1354695_42	UniRef90_U2R0H8	213.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1354695_42	1226322.HMPREF1545_02801	213.0	0	Peptidase M15	N/A
Pfam	UHGV-1354695_42	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1354695_42	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354695_42	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_43	phrog_13256	63.4	2.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1354695_43	1226322.HMPREF1545_00132	77.4	5.61e-18	N/A	N/A
PHROG	UHGV-1354695_44	phrog_4105	67.4	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1354695_44	1321782.HMPREF1986_02281	61.2	0.000000000156	N/A	N/A
PHROG	UHGV-1354695_45	phrog_27545	182.5	0	N/A	unknown function
UniRef90	UHGV-1354695_45	UniRef90_D1PRE7	139.0	1.55e-39	Glycosyl hydrolase, family 18 family protein	N/A
eggNOG-mapper	UHGV-1354695_45	1226322.HMPREF1545_00129	199.0	0	N/A	N/A
Pfam	UHGV-1354695_45	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1354695_46	phrog_4628	72.8	5.6e-21	tail fiber assembly	tail
eggNOG-mapper	UHGV-1354695_46	1226322.HMPREF1545_00128	124.0	1.63e-30	N/A	N/A
Pfam	UHGV-1354695_46	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
PHROG	UHGV-1354695_48	phrog_1899	48.2	0.000000000000066	N/A	unknown function
UniRef90	UHGV-1354695_48	UniRef90_A0A810QCC8	166.0	4.27999e-41	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1354695_48	1235797.C816_04179	155.0	3.09e-38	Chaperone of endosialidase	N/A
Pfam	UHGV-1354695_48	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1354695_48	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_50	phrog_991	235.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1354695_50	1283341.TMP_BPPCD	340.0	0	amidase activity	N/A
Pfam	UHGV-1354695_50	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1354695_50	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-1354695_52	phrog_706	164.5	0	N/A	unknown function
UniRef90	UHGV-1354695_52	UniRef90_UPI001D05F1D0	167.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1354695_52	573061.Clocel_0219	153.0	4.76441e-44	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1354695_52	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1354695_52	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_53	phrog_4450	119.5	1.9e-35	N/A	unknown function
UniRef90	UHGV-1354695_53	UniRef90_UPI001C0AC01D	90.1	5.33e-21	AP endonuclease	N/A
eggNOG-mapper	UHGV-1354695_53	573061.Clocel_3535	87.8	7.03e-21	N/A	N/A
Pfam	UHGV-1354695_53	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-1354695_53	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_54	phrog_820	88.5	5.9e-26	major tail protein	tail
UniRef90	UHGV-1354695_54	UniRef90_A0A174M1L1	227.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1354695_54	411461.DORFOR_01172	210.0	0	N/A	N/A
structural_annotation	UHGV-1354695_54	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_55	phrog_3266	138.5	2.4e-41	tail completion	connector
UniRef90	UHGV-1354695_55	UniRef90_UPI000F637EFF	189.0	0	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-1354695_55	641112.ACOK01000073_gene2899	126.0	2.51e-35	N/A	N/A
structural_annotation	UHGV-1354695_55	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_56	phrog_556	79.5	3.6e-23	minor head protein	head and packaging
UniRef90	UHGV-1354695_56	UniRef90_UPI000F63A4E5	181.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1354695_56	936375.HMPREF1152_1079	84.3	4.15e-19	N/A	N/A
Pfam	UHGV-1354695_56	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1354695_56	PF11114	N/A	N/A	N/A	N/A
Pfam	UHGV-1354695_57	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1354695_57	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_58	phrog_541	108.4	4.4e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-1354695_58	1120998.AUFC01000030_gene2237	101.0	2.33e-26	N/A	N/A
structural_annotation	UHGV-1354695_59	PF05605	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_60	phrog_422	228.3	0	major head protein	head and packaging
UniRef90	UHGV-1354695_60	UniRef90_W0U896	361.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1354695_60	693746.OBV_18090	410.0	0	N/A	N/A
structural_annotation	UHGV-1354695_60	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1354695_61	phrog_194	77.4	2.4e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-1354695_61	UniRef90_UPI000B35FF41	239.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1354695_61	663278.Ethha_0093	128.0	6.21e-35	N/A	N/A
Pfam	UHGV-1354695_61	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1354695_61	PF06810	N/A	N/A	N/A	N/A