UHGV-1355267 (vOTU-046349)

Viral Genome: UHGV-1355267

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1355267
vOTU ID	vOTU-046349
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0316583
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.51
Jumbo phage	No

Genome content
Genome length (bp)	52,536
GC content	43.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	87
CDS density	89%
Average CDS length (bps)	537.55
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1355267_6	phrog_38	117.6	4.5e-35	terminase large subunit	head and packaging
UniRef90	UHGV-1355267_6	UniRef90_A0A1S9I916	68.6	0.0000000185	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1355267_6	428127.EUBDOL_01551	159.0	4.74003e-41	chromosome segregation	N/A
COG	UHGV-1355267_6	COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_8	phrog_64	126.3	1.9e-37	portal protein	head and packaging
UniRef90	UHGV-1355267_8	UniRef90_A0A374HKE8	134.0	2.35e-30	Phage portal protein	N/A
eggNOG-mapper	UHGV-1355267_8	1121866.AUGK01000003_gene1429	135.0	1.1e-31	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1355267_8	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1355267_8	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_10	phrog_909	47.7	0.00000000000023	major head protein	head and packaging
UniRef90	UHGV-1355267_10	UniRef90_A0A0A8JLJ9	52.8	0.00000141	N/A	N/A
eggNOG-mapper	UHGV-1355267_10	1123302.KB904182_gene70	49.7	0.0000056	N/A	N/A
PHROG	UHGV-1355267_11	phrog_29	173.8	0	major head protein	head and packaging
UniRef90	UHGV-1355267_11	UniRef90_A0A2K9P3U0	227.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1355267_11	1232443.BAIA02000078_gene29	202.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1355267_11	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1355267_11	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_17	phrog_158	51.3	0.000000000000024	major tail protein	tail
UniRef90	UHGV-1355267_17	UniRef90_A0A847W3X1	108.0	2.41e-27	Phage tail protein	N/A
eggNOG-mapper	UHGV-1355267_17	1232453.BAIF02000058_gene1634	72.8	0.0000000000000286	N/A	N/A
structural_annotation	UHGV-1355267_17	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_20	phrog_28918	57.8	9.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1355267_20	1121866.AUGK01000003_gene1437	111.0	4.11e-22	phage tail tape measure protein	N/A
COG	UHGV-1355267_20	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
Pfam	UHGV-1355267_21	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-1355267_21	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-1355267_28	K01803	267.7	0	TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1]	N/A
UniRef90	UHGV-1355267_28	UniRef90_R6QX34	202.0	0	Triosephosphate isomerase	N/A
eggNOG-mapper	UHGV-1355267_28	1280679.ATVX01000001_gene2687	202.0	0	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	N/A
Pfam	UHGV-1355267_28	PF00121	N/A	N/A	Triosephosphate isomerase	TIM
NCBIFam	UHGV-1355267_28	TIGR00419.1	N/A	N/A	triose-phosphate isomerase	N/A
COG	UHGV-1355267_28	COG0149	N/A	N/A	Triosephosphate isomerase	N/A
structural_annotation	UHGV-1355267_28	PF00121,MF_00147_B,NF000722,COG0149	N/A	N/A	N/A	N/A
Pfam	UHGV-1355267_35	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
structural_annotation	UHGV-1355267_35	PF08281,NF001067,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1355267_36	1410632.JHWW01000012_gene94	49.7	0.00000764	N/A	N/A
PHROG	UHGV-1355267_38	phrog_21718	67.1	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1355267_38	476272.RUMHYD_01768	59.3	0.00000000411	N/A	N/A
PHROG	UHGV-1355267_41	phrog_59	146.4	8.68805e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1355267_41	UniRef90_UPI0009FCF425	122.0	4.57e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1355267_41	207656.S6ANT1_9CAUD	104.0	5.61e-26	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-1355267_41	HEase_00016	63.2	7.9e-18	homing endonuclease	RM
Pfam	UHGV-1355267_41	PF13392	N/A	N/A	HNH endonuclease	HNH_3
eggNOG-mapper	UHGV-1355267_42	658655.HMPREF0988_00916	129.0	6.31e-37	N/A	N/A
eggNOG-mapper	UHGV-1355267_43	1378168.N510_03079	58.9	0.000000142	N/A	N/A
KOfam	UHGV-1355267_52	K17680	81.6	6.7e-24	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1355267_52	phrog_239	74.8	1e-21	DNA primase/helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1355267_52	500633.CLOHIR_00351	76.6	0.00000000000136	DNA helicase	N/A
COG	UHGV-1355267_52	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1355267_52	PF03796,MF_04154,NF006443,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1355267_53	K17398	71.7	3.8e-33	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-1355267_53	phrog_17284	128.3	0	N/A	unknown function
UniRef90	UHGV-1355267_53	UniRef90_A0A1C0AG58	383.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1355267_53	1291050.JAGE01000001_gene476	361.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1355267_53	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1355267_53	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1355267_53	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1355267_54	UniRef90_A0A7V6XP83	207.0	0	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1355267_54	81824.XP_001747074.1	57.4	0.00000202	adenosine deaminase-like	N/A
Pfam	UHGV-1355267_54	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1355267_54	COG0537	N/A	N/A	Purine nucleoside phosphoramidase/Ap4A hydrolase, histidine triade (HIT) family	N/A
PHROG	UHGV-1355267_57	phrog_270	69.0	6.3e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1355267_57	1232446.BAIE02000002_gene816	90.9	4.89e-19	N/A	N/A
Pfam	UHGV-1355267_57	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
PHROG	UHGV-1355267_58	phrog_2118	81.6	9.9e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1355267_58	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1355267_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1355267_59	phrog_3490	97.8	9.6e-29	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1355267_59	UniRef90_A0A359MQV2	78.6	0.0000000000000051	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1355267_59	1504823.CCMM01000008_gene1063	87.8	1.14e-19	N/A	N/A
structural_annotation	UHGV-1355267_59	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_61	phrog_10048	70.2	1.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-1355267_61	1111134.HMPREF1253_1200	121.0	5.82e-31	N/A	N/A
structural_annotation	UHGV-1355267_61	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1355267_62	phrog_298	103.8	7.6e-31	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1355267_62	UniRef90_A0A2D7M464	71.6	0.000000000012	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1355267_62	223184.AS25_04615	56.6	0.000000656	ATP-dependent DNA helicase activity	N/A
COG	UHGV-1355267_62	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1355267_62	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1355267_70	PF14173	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1355267_78	1235815.BAIX01000083_gene2569	75.9	0.00000000000000369	N/A	N/A
KOfam	UHGV-1355267_81	K01258	55.8	1.4e-24	pepT; tripeptide aminopeptidase [EC:3.4.11.4]	N/A
PHROG	UHGV-1355267_81	phrog_34186	140.7	9.99967e-42	N/A	unknown function
UniRef90	UHGV-1355267_81	UniRef90_A0A1T4Y6L2	230.0	0	Peptidase family M28	N/A
eggNOG-mapper	UHGV-1355267_81	411467.BACCAP_03129	204.0	0	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	N/A
Pfam	UHGV-1355267_81	PF04389	N/A	N/A	Peptidase family M28	Peptidase_M28
COG	UHGV-1355267_81	COG0624	N/A	N/A	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	N/A
structural_annotation	UHGV-1355267_81	PF05343,MF_00550,TIGR01883,COG1363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1355267_82	742733.HMPREF9469_00925	129.0	3.18e-28	N/A	N/A