UHGV-1356016 (vOTU-020825)

Viral Genome: UHGV-1356016

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1356016
vOTU ID	vOTU-020825
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677837_NODE_203_length_20016_cov_38.249887
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.46
Jumbo phage	No

Genome content
Genome length (bp)	20,016
GC content	52.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	24
CDS density	93%
Average CDS length (bps)	774.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1356016_1	1280664.AUIX01000005_gene2823	60.5	0.0000000128	N/A	N/A
KOfam	UHGV-1356016_2	K18843	67.5	2.8e-19	hicB; antitoxin HicB	N/A
PHROG	UHGV-1356016_2	phrog_497	73.7	3.3e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356016_2	UniRef90_A0A329TU28	190.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-1356016_2	657322.FPR_23750	191.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1356016_2	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1356016_2	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1356016_2	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-1356016_3	K07339	62.1	8.3e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1356016_3	phrog_353	86.3	1.8e-25	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356016_3	UniRef90_A0A1Q6T334	120.0	1.29e-34	Toxin HicA	N/A
eggNOG-mapper	UHGV-1356016_3	478749.BRYFOR_07601	89.0	6.94e-23	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1356016_3	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1356016_3	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1356016_3	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1356016_4	K14059	94.5	1.8e-27	int; integrase	N/A
PHROG	UHGV-1356016_4	phrog_1	101.6	9.7e-30	integrase	integration and excision
UniRef90	UHGV-1356016_4	UniRef90_UPI0011C8F252	317.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1356016_4	693746.OBV_25530	230.0	0	Phage integrase family	N/A
Pfam	UHGV-1356016_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1356016_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1356016_4	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356016_5	UniRef90_UPI0006C78861	55.8	0.000000019	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1356016_5	1235797.C816_01775	48.9	0.00000124	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1356016_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1356016_6	PF20124	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_7	phrog_1129	60.5	2.2e-17	holin	lysis
UniRef90	UHGV-1356016_7	UniRef90_UPI00164CD48B	164.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1356016_7	1226322.HMPREF1545_00069	101.0	6.27e-27	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1356016_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1356016_7	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1356016_9	K07273	207.4	0	acm; lysozyme	N/A
PHROG	UHGV-1356016_9	phrog_291	158.9	0	endolysin	lysis
UniRef90	UHGV-1356016_9	UniRef90_UPI00164A97A0	534.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1356016_9	1410616.JHXE01000012_gene160	158.0	8.06994e-41	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1356016_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1356016_9	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1356016_9	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_10	phrog_19280	47.3	0.00000000000023	N/A	unknown function
Pfam	UHGV-1356016_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-1356016_10	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1356016_10	PF10651,PF03426,NF033675,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_11	phrog_1067	382.1	0	minor head protein	head and packaging
UniRef90	UHGV-1356016_11	UniRef90_A0A316NPB5	621.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356016_11	1160721.RBI_I01574	406.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1356016_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1356016_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1356016_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1356016_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_12	phrog_33	76.3	6.4e-22	distal tail protein Dit	tail
UniRef90	UHGV-1356016_12	UniRef90_A0A173Z1X4	210.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1356016_12	1160721.RBI_I01575	155.0	2.8026e-44	Phage tail protein	N/A
COG	UHGV-1356016_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1356016_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_13	phrog_8462	174.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1356016_13	UniRef90_A0A1M6L1P7	242.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1356016_13	509191.AEDB02000020_gene3249	238.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-1356016_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1356016_13	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_15	phrog_88	88.2	9.5e-26	major tail protein	tail
UniRef90	UHGV-1356016_15	UniRef90_UPI0018771F27	152.0	5.395e-43	phage tail protein	N/A
eggNOG-mapper	UHGV-1356016_15	33035.JPJF01000039_gene278	90.9	6e-20	N/A	N/A
NCBIFam	UHGV-1356016_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1356016_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_16	phrog_5	47.3	0.00000000000048	tail completion or Neck1 protein	connector
UniRef90	UHGV-1356016_16	UniRef90_A0A1C6FG30	151.0	9.10844e-44	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1356016_16	908340.HMPREF9406_2573	131.0	9.58e-37	N/A	N/A
NCBIFam	UHGV-1356016_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1356016_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356016_17	1232446.BAIE02000002_gene829	99.4	1.17e-25	N/A	N/A
structural_annotation	UHGV-1356016_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_18	phrog_19734	87.7	1.3e-25	N/A	unknown function
UniRef90	UHGV-1356016_18	UniRef90_A0A3R6AW46	97.1	9.7e-24	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1356016_18	1235798.C817_04587	90.1	7.97e-22	N/A	N/A
structural_annotation	UHGV-1356016_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_19	phrog_2550	80.3	1.3e-23	N/A	unknown function
UniRef90	UHGV-1356016_19	UniRef90_R5V091	92.0	1.82e-22	Phage related protein	N/A
eggNOG-mapper	UHGV-1356016_19	1226322.HMPREF1545_00117	98.2	1.13e-25	N/A	N/A
structural_annotation	UHGV-1356016_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_20	phrog_10	201.0	0	major head protein	head and packaging
UniRef90	UHGV-1356016_20	UniRef90_UPI000679B959	908.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1356016_20	1226322.HMPREF1545_00116	638.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1356016_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1356016_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1356016_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1356016_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1356016_21	K06904	144.4	1.00053e-42	N/A	N/A
PHROG	UHGV-1356016_21	phrog_80	169.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1356016_21	UniRef90_A0A0D8IYC2	345.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1356016_21	1226322.HMPREF1545_00115	251.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1356016_21	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1356016_21	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1356016_21	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1356016_21	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_22	phrog_12	178.9	0	portal protein	head and packaging
UniRef90	UHGV-1356016_22	UniRef90_A0A0D8IVL0	642.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1356016_22	1226322.HMPREF1545_00114	521.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1356016_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1356016_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1356016_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1356016_22	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1356016_23	phrog_9	292.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1356016_23	UniRef90_A0A0D8IV16	1086.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1356016_23	1226322.HMPREF1545_00113	888.0	0	Phage Terminase	N/A
Pfam	UHGV-1356016_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1356016_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1356016_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1356016_23	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A