UHGV-1356098 (vOTU-002177)

Viral Genome: UHGV-1356098

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1356098
vOTU ID	vOTU-002177
Representative Genome?	Yes
Source	GVD
Original genome ID	Shkoporov_2019_SRR9161556_NODE_116_length_34762_cov_20.694874
Associated BioSample	SAMN11893750
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.6
Jumbo phage	No

Genome content
Genome length (bp)	34,707
GC content	44.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	640.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1356098_2	PF11372	N/A	N/A	N/A	N/A
KOfam	UHGV-1356098_4	K00390	47.9	1.7e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1356098_4	phrog_424	123.6	1.4e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356098_4	UniRef90_UPI001899D561	457.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1356098_4	397291.C804_05723	264.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1356098_4	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1356098_4	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1356098_4	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1356098_5	K07741	143.7	2.79979e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-1356098_5	phrog_130	282.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1356098_5	UniRef90_A0A7G5MXK6	342.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_5	887325.HMPREF0381_0355	340.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1356098_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1356098_5	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1356098_5	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1356098_5	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356098_6	UniRef90_A0A5R9MJ58	119.0	1.32e-33	Helix-turn-helix transcriptional regulator (Fragment)	N/A
Pfam	UHGV-1356098_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1356098_7	phrog_8	52.7	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356098_7	UniRef90_A0A6N3I0F5	81.6	5.55e-18	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-1356098_7	742733.HMPREF9469_01855	67.4	0.00000000000037	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1356098_7	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-1356098_7	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1356098_7	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_8	phrog_87	51.3	0.0000000000000092	metallo-protease	other
UniRef90	UHGV-1356098_8	UniRef90_A0A3D1HDV6	165.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_8	428125.CLOLEP_01867	125.0	9.18e-33	N/A	N/A
Pfam	UHGV-1356098_8	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
UniRef90	UHGV-1356098_9	UniRef90_UPI001C126F91	58.9	0.000000428	copper amine oxidase N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_9	445972.ANACOL_01856	110.0	1.17e-26	N/A	N/A
KOfam	UHGV-1356098_10	K14059	250.1	0	int; integrase	N/A
PHROG	UHGV-1356098_10	phrog_1	213.1	0	integrase	integration and excision
UniRef90	UHGV-1356098_10	UniRef90_A0A1C6FGR9	753.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1356098_10	1408823.AXUS01000024_gene2685	174.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1356098_10	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1356098_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1356098_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1356098_10	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_11	phrog_297	173.8	0	holin	lysis
UniRef90	UHGV-1356098_11	UniRef90_A0A356CY82	464.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_11	1160721.RBI_II00521	92.0	1.94e-19	hydrolase, family 25	N/A
Pfam	UHGV-1356098_11	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1356098_11	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1356098_11	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_12	phrog_199	81.0	1.3e-23	holin	lysis
UniRef90	UHGV-1356098_12	UniRef90_A0A373XMP0	280.0	0	Holin	N/A
eggNOG-mapper	UHGV-1356098_12	1160721.RBI_I01565	183.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1356098_12	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1356098_12	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1356098_12	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1356098_12	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_13	phrog_134	56.0	5.3e-16	N/A	unknown function
UniRef90	UHGV-1356098_13	UniRef90_A0A373V5J8	93.6	2.1e-24	XkdX family protein	N/A
eggNOG-mapper	UHGV-1356098_13	478749.BRYFOR_07560	51.6	0.0000000146	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1356098_13	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1356098_13	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1356098_13	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356098_15	1410617.JHXH01000006_gene232	83.2	0.0000000000000496	N/A	N/A
structural_annotation	UHGV-1356098_15	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_17	phrog_9680	51.5	7e-16	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1356098_17	1160721.RBI_II00526	501.0	0	N/A	N/A
structural_annotation	UHGV-1356098_17	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_18	phrog_1194	49.9	0.000000000000049	N/A	unknown function
eggNOG-mapper	UHGV-1356098_18	1160721.RBI_II00527	103.0	7.48e-27	N/A	N/A
structural_annotation	UHGV-1356098_18	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_19	phrog_6900	264.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1356098_19	585203.SMSK564_1276	315.0	0	phage tail tape measure protein	N/A
COG	UHGV-1356098_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356098_19	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_20	phrog_1633	130.6	6.2e-39	N/A	unknown function
UniRef90	UHGV-1356098_20	UniRef90_A0A0E3WFP2	112.0	1.2e-29	N/A	N/A
eggNOG-mapper	UHGV-1356098_20	1280698.AUJS01000007_gene1046	103.0	8.77e-27	N/A	N/A
Pfam	UHGV-1356098_20	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1356098_20	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_21	phrog_1526	71.2	1.2e-20	N/A	unknown function
UniRef90	UHGV-1356098_21	UniRef90_G2SN49	55.8	0.0000000289	N/A	N/A
eggNOG-mapper	UHGV-1356098_21	665950.HMPREF1025_02524	73.9	4.02e-16	N/A	N/A
PHROG	UHGV-1356098_22	phrog_117	163.2	0	major tail protein	tail
UniRef90	UHGV-1356098_22	UniRef90_A0A373V4D0	367.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1356098_22	1121864.OMO_02158	191.0	0	domain, Protein	N/A
COG	UHGV-1356098_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356098_22	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_23	phrog_123	63.3	4.2e-18	tail terminator	connector
UniRef90	UHGV-1356098_23	UniRef90_A0A2A5RIK6	121.0	2.16e-33	N/A	N/A
eggNOG-mapper	UHGV-1356098_23	1123263.AUKY01000068_gene495	124.0	1.55e-35	N/A	N/A
structural_annotation	UHGV-1356098_23	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_24	phrog_387	59.1	7.2e-17	neck protein	connector
eggNOG-mapper	UHGV-1356098_24	1423775.BAMN01000011_gene600	60.1	0.0000000000559	N/A	N/A
PHROG	UHGV-1356098_25	phrog_501	78.8	5.8e-23	head closure Hc1	connector
UniRef90	UHGV-1356098_25	UniRef90_R6CEU4	147.0	1.27518e-43	N/A	N/A
eggNOG-mapper	UHGV-1356098_25	43685.Q38120_BPR1T	136.0	4.77001e-40	N/A	N/A
structural_annotation	UHGV-1356098_25	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_26	phrog_137	53.3	0.0000000000000038	head-tail adaptor Ad1	connector
UniRef90	UHGV-1356098_26	UniRef90_R6C7E8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1356098_26	1121864.OMO_02154	87.0	5.13e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1356098_26	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1356098_26	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_27	phrog_32396	126.7	7.1e-38	N/A	unknown function
UniRef90	UHGV-1356098_27	UniRef90_A0A373V3S9	583.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1356098_27	936375.HMPREF1152_0679	325.0	0	Phage capsid family	N/A
Pfam	UHGV-1356098_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1356098_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1356098_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_28	phrog_233	65.3	1.7e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1356098_28	UniRef90_A0A7Z2B590	76.6	0.00000000000000573	N/A	N/A
eggNOG-mapper	UHGV-1356098_28	1280698.AUJS01000007_gene1037	66.6	0.00000000000728	N/A	N/A
Pfam	UHGV-1356098_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1356098_28	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_29	phrog_17688	302.3	0	N/A	unknown function
UniRef90	UHGV-1356098_29	UniRef90_A0A373V412	847.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1356098_29	936375.HMPREF1152_0677	514.0	0	phage terminase, large subunit	N/A
COG	UHGV-1356098_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1356098_29	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356098_31	936596.HMPREF1495_2378	81.6	1.34e-19	N/A	N/A
PHROG	UHGV-1356098_32	phrog_2494	165.5	0	minor head protein	head and packaging
UniRef90	UHGV-1356098_32	UniRef90_UPI001F3BD4CE	135.0	2.6e-32	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_32	1214184.ALKY01000039_gene923	132.0	6.47e-32	N/A	N/A
PHROG	UHGV-1356098_33	phrog_104	252.0	0	portal protein	head and packaging
UniRef90	UHGV-1356098_33	UniRef90_A0A373V3S0	796.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1356098_33	1280698.AUJS01000007_gene1033	491.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1356098_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_34	phrog_338	97.9	1.2e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356098_34	UniRef90_A0A373V3S6	234.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1356098_34	1280698.AUJS01000007_gene1032	175.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1356098_34	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1356098_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1356098_35	phrog_36	48.2	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356098_35	UniRef90_A0A374HLM1	244.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-1356098_35	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356098_36	UniRef90_A0A373XZK2	720.0	0	N/A	N/A
eggNOG-mapper	UHGV-1356098_36	1160721.RBI_I01194	620.0	0	N/A	N/A
Pfam	UHGV-1356098_36	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-1356098_36	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_39	phrog_824	125.8	1.7e-37	N/A	unknown function
UniRef90	UHGV-1356098_39	UniRef90_A0A373V639	246.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1356098_39	742738.HMPREF9460_02501	109.0	2.73e-29	VRR_NUC	N/A
Pfam	UHGV-1356098_39	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1356098_39	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-1356098_40	K17677	420.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1356098_40	phrog_16	250.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356098_40	UniRef90_A0A373V5W0	1012.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1356098_40	742738.HMPREF9460_02499	645.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1356098_40	mREase_IV_00005	113.8	1.5e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1356098_40	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1356098_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1356098_40	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1356098_40	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_41	phrog_8841	490.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356098_41	UniRef90_A0A1C6FHQ3	1259.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1356098_41	742738.HMPREF9460_02495	611.0	0	N/A	N/A
Pfam	UHGV-1356098_41	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1356098_41	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1356098_41	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356098_41	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1356098_42	K03111	53.1	0.0000000000000088	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1356098_42	phrog_44	51.5	0.000000000000031	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356098_42	UniRef90_A0A1C6FIL5	279.0	0	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-1356098_42	1121370.AQUY01000001_gene1006	56.6	0.0000000374	Single-strand binding protein family	N/A
Pfam	UHGV-1356098_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1356098_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1356098_42	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_43	phrog_3657	357.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1356098_43	1121864.OMO_02139	233.0	0	N/A	N/A
KOfam	UHGV-1356098_44	K10906	105.8	7.7e-38	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1356098_44	phrog_412	273.2	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356098_44	UniRef90_A0A1C6FHM2	527.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-1356098_44	1454004.AW11_02382	189.0	0	N/A	N/A
Pfam	UHGV-1356098_44	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1356098_44	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1356098_44	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1356098_45	phrog_412	59.1	9.3e-17	exonuclease VIII	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1356098_45	1454004.AW11_02382	57.4	0.0000000389	N/A	N/A
COG	UHGV-1356098_45	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
PHROG	UHGV-1356098_50	phrog_757	202.3	0	DNA methyltransferase	other
UniRef90	UHGV-1356098_50	UniRef90_A0A349YFI2	260.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1356098_50	1095750.HMPREF9970_0173	240.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1356098_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1356098_50	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A