UHGV-1356414 (vOTU-054658)

Viral Genome: UHGV-1356414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1356414
vOTU ID	vOTU-054658
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0280243
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.29
Jumbo phage	No

Genome content
Genome length (bp)	42,159
GC content	53.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	90%
Average CDS length (bps)	524.42
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1356414_2	1235802.C823_04625	59.7	0.00000000263	N/A	N/A
structural_annotation	UHGV-1356414_2	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_4	phrog_3754	90.1	2.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1356414_4	1235790.C805_00054	106.0	6.05e-28	N/A	N/A
PHROG	UHGV-1356414_5	phrog_21718	118.1	6.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1356414_5	397290.C810_05210	99.4	2.7e-24	N/A	N/A
PHROG	UHGV-1356414_6	phrog_22984	80.2	1.5e-23	N/A	unknown function
PHROG	UHGV-1356414_7	phrog_16490	149.2	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-1356414_7	1408437.JNJN01000043_gene803	141.0	2.38e-38	N/A	N/A
PHROG	UHGV-1356414_9	phrog_20016	215.6	0	N/A	unknown function
UniRef90	UHGV-1356414_9	UniRef90_A0A285PT46	203.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1356414_9	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-1356414_9	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_10	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_12	K14059	136.7	2.9e-40	int; integrase	N/A
PHROG	UHGV-1356414_12	phrog_1	164.5	0	integrase	integration and excision
UniRef90	UHGV-1356414_12	UniRef90_A0A6N7TNQ4	734.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1356414_12	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1356414_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1356414_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1356414_12	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356414_13	UniRef90_A0A6N7TLT0	385.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_13	266265.Bxe_A3948	54.3	0.000000178	Helix-turn-helix domain	N/A
Pfam	UHGV-1356414_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1356414_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1356414_13	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_16	phrog_888	64.3	1.6e-34	N/A	unknown function
UniRef90	UHGV-1356414_16	UniRef90_A0A6N7TMA2	438.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_16	1415774.U728_165	84.3	1.13e-16	Short C-terminal domain	N/A
Pfam	UHGV-1356414_16	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1356414_16	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1356414_16	PF15947,PF14471	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_20	phrog_2967	44.3	0.0000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356414_20	UniRef90_UPI001966F1BB	88.2	5.43e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1356414_20	1226322.HMPREF1545_00148	75.5	4.64e-16	Transcriptional	N/A
Pfam	UHGV-1356414_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1356414_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1356414_20	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356414_21	UniRef90_A0A1C7FQD9	80.1	2.69e-18	Transcriptional regulator	N/A
Pfam	UHGV-1356414_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1356414_21	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_22	K07741	144.1	2.10055e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-1356414_22	phrog_63	122.1	5.2e-36	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1356414_22	UniRef90_A0A6N7TLD1	334.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-1356414_22	1051631.F8HGQ0_9CAUD	209.0	0	DNA binding	N/A
Pfam	UHGV-1356414_22	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1356414_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1356414_22	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356414_23	1121865.OMW_01950	70.9	0.00000000000000375	N/A	N/A
structural_annotation	UHGV-1356414_23	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_27	phrog_4433	142.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1356414_27	394503.Ccel_3068	120.0	2.43e-31	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1356414_27	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1356414_28	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_29	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_30	PF14120	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356414_31	760568.Desku_0919	103.0	7.5e-25	N/A	N/A
structural_annotation	UHGV-1356414_31	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_33	phrog_7838	124.2	9.7e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356414_33	UniRef90_A0A8D9UGW3	192.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1356414_33	742767.HMPREF9456_02052	143.0	4.52e-40	N/A	N/A
structural_annotation	UHGV-1356414_33	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_34	K03111	142.8	3.59994e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1356414_34	phrog_44	150.8	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356414_34	UniRef90_D4K451	213.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1356414_34	718252.FP2_06770	213.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1356414_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1356414_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1356414_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1356414_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1356414_34	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_35	K02086	61.8	1.1e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-1356414_35	phrog_186	70.9	2.2e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356414_35	UniRef90_A0A844D5V0	229.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1356414_35	563038.HMPREF0851_01045	54.3	0.00000606	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1356414_35	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1356414_35	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1356414_35	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1356414_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1356414_35	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_36	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_37	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_40	phrog_3136	136.1	1.10001e-40	N/A	unknown function
UniRef90	UHGV-1356414_40	UniRef90_UPI001C02A61B	301.0	0	ASCH domain-containing protein	N/A
Pfam	UHGV-1356414_40	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1356414_40	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1356414_40	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_41	K01160	59.2	1.3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1356414_41	phrog_34	60.2	4.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356414_41	UniRef90_A0A6N7TND6	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1356414_41	875454.BAEW01000002_gene491	134.0	3.63e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1356414_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1356414_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1356414_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_42	phrog_9298	319.1	0	radical SAM domain protein	other
UniRef90	UHGV-1356414_42	UniRef90_A0A6L5TFB3	584.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1356414_42	1235798.C817_05514	328.0	0	N/A	N/A
COG	UHGV-1356414_42	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1356414_42	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_43	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_44	phrog_56	59.0	5.7e-17	DNA methyltransferase	other
UniRef90	UHGV-1356414_44	UniRef90_UPI001C01192B	377.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1356414_44	1236504.HMPREF2132_01695	181.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1356414_44	MTase_II_00075	59.8	2.6e-17	Type II methyltransferase	RM
Pfam	UHGV-1356414_44	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UniRef90	UHGV-1356414_45	UniRef90_UPI0018CC2891	113.0	3.49e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_45	1235790.C805_00037	108.0	4.36e-28	N/A	N/A
structural_annotation	UHGV-1356414_45	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_46	K06909	141.7	6.69961e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1356414_46	phrog_10250	170.8	0	N/A	unknown function
UniRef90	UHGV-1356414_46	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1356414_46	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1356414_46	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1356414_46	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1356414_46	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1356414_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1356414_46	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_47	phrog_64	122.3	1.7e-36	portal protein	head and packaging
UniRef90	UHGV-1356414_47	UniRef90_A0A6N7TNT3	886.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1356414_47	1042156.CXIVA_01850	81.3	0.000000000000139	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1356414_47	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1356414_47	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_48	phrog_2468	85.9	3.3e-25	head morphogenesis	head and packaging
UniRef90	UHGV-1356414_48	UniRef90_A0A6N7TLR7	593.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_48	386415.NT01CX_2177	82.4	0.0000000000000185	Phage Mu protein F like protein	N/A
Pfam	UHGV-1356414_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1356414_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_48	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_50	phrog_8680	202.7	0	N/A	unknown function
UniRef90	UHGV-1356414_50	UniRef90_A0A844D688	452.0	0	N/A	N/A
eggNOG-mapper	UHGV-1356414_50	1423790.BN53_04265	184.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1356414_50	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1356414_50	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1356414_50	PF14386	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356414_51	PF17599,PF14282,NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_54	phrog_5	48.7	0.00000000000018	tail completion or Neck1 protein	connector
UniRef90	UHGV-1356414_54	UniRef90_A0A6N7TNP6	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1356414_54	929506.CbC4_1219	90.5	4.23e-21	N/A	N/A
Pfam	UHGV-1356414_54	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1356414_54	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_57	phrog_544	138.4	4.80001e-41	major head protein	head and packaging
UniRef90	UHGV-1356414_57	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_57	476272.RUMHYD_01776	318.0	0	N/A	N/A
structural_annotation	UHGV-1356414_57	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_59	phrog_17977	41.9	0.000000000014	N/A	unknown function
UniRef90	UHGV-1356414_59	UniRef90_A0A844DHJ8	116.0	2.67e-31	Phage head closure protein	N/A
structural_annotation	UHGV-1356414_59	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356414_60	UniRef90_A0A415JI88	63.9	0.000000000138	N/A	N/A
structural_annotation	UHGV-1356414_60	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_61	phrog_885	69.2	5e-20	major tail protein	tail
eggNOG-mapper	UHGV-1356414_61	1111121.HMPREF1247_0789	149.0	4.55422e-43	N/A	N/A
structural_annotation	UHGV-1356414_61	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_64	phrog_1686	78.6	6.2e-23	tail length tape measure protein	tail
UniRef90	UHGV-1356414_64	UniRef90_A0A6N7TLD3	703.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1356414_64	1492737.FEM08_12070	139.0	1.26e-31	tape measure	N/A
Pfam	UHGV-1356414_64	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1356414_64	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1356414_64	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1356414_64	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356414_65	UniRef90_A0A415UCK7	83.2	2.03e-16	MtfA protein	N/A
eggNOG-mapper	UHGV-1356414_65	1120933.ATUY01000002_gene165	83.2	3.91e-17	N/A	N/A
NCBIFam	UHGV-1356414_65	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-1356414_65	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_66	phrog_3558	181.7	0	tail protein	tail
UniRef90	UHGV-1356414_66	UniRef90_A0A8B3ALT8	150.0	7.48e-35	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1356414_66	411460.RUMTOR_00484	148.0	7.43e-35	Prophage endopeptidase tail	N/A
Pfam	UHGV-1356414_66	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1356414_66	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1356414_66	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-1356414_67	K03651	48.1	0.00000000000019	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1356414_67	phrog_7158	54.7	1.3e-21	N/A	unknown function
UniRef90	UHGV-1356414_67	UniRef90_UPI000B9D7A4E	80.9	0.0000000000011	metallophosphoesterase	N/A
eggNOG-mapper	UHGV-1356414_67	411901.BACCAC_01116	98.2	1.61e-18	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-1356414_67	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
KOfam	UHGV-1356414_68	K07273	157.7	0	acm; lysozyme	N/A
PHROG	UHGV-1356414_68	phrog_291	111.9	6.8e-33	endolysin	lysis
UniRef90	UHGV-1356414_68	UniRef90_A0A564U0D3	393.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1356414_68	718252.FP2_04890	230.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1356414_68	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1356414_68	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1356414_68	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1356414_70	phrog_15303	75.9	4.7e-22	N/A	unknown function