UHGV-1356616 (vOTU-054674)

Viral Genome: UHGV-1356616

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1356616
vOTU ID	vOTU-054674
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0276400
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.71
Jumbo phage	No

Genome content
Genome length (bp)	41,459
GC content	59.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	92%
Average CDS length (bps)	666.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1356616_1	phrog_6918	61.6	1.1e-17	holin	lysis
UniRef90	UHGV-1356616_1	UniRef90_A0A316QCY7	71.2	0.0000000000000155	Holin	N/A
eggNOG-mapper	UHGV-1356616_1	1297617.JPJD01000020_gene301	69.7	0.0000000000000108	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1356616_1	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-1356616_4	phrog_937	46.7	0.00000000000048	hemolysin	other
PHROG	UHGV-1356616_5	phrog_37900	56.4	5.6e-18	N/A	unknown function
UniRef90	UHGV-1356616_5	UniRef90_R5IRZ6	267.0	0	N/A	N/A
eggNOG-mapper	UHGV-1356616_5	1519439.JPJG01000060_gene1894	179.0	0	N/A	N/A
Pfam	UHGV-1356616_5	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1356616_5	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1356616_5	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1356616_6	K16628	180.0	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1356616_6	phrog_819	103.3	0	tail protein	tail
eggNOG-mapper	UHGV-1356616_6	1232443.BAIA02000078_gene14	84.0	0.0000000000000264	nuclear chromosome segregation	N/A
Pfam	UHGV-1356616_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1356616_6	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1356616_7	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_8	phrog_33872	55.5	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1356616_8	693746.OBV_19740	59.3	0.000000000277	N/A	N/A
PHROG	UHGV-1356616_9	phrog_22978	129.0	1.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-1356616_9	1232449.BAHV02000016_gene1805	417.0	0	N/A	N/A
UniRef90	UHGV-1356616_10	UniRef90_R5DCX9	188.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356616_10	1410650.JHWL01000003_gene2815	138.0	5.2e-34	N/A	N/A
PHROG	UHGV-1356616_11	phrog_12105	126.2	1.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1356616_11	1226322.HMPREF1545_03850	63.9	0.000000000026	N/A	N/A
PHROG	UHGV-1356616_13	phrog_1357	218.3	0	major head protein	head and packaging
UniRef90	UHGV-1356616_13	UniRef90_A0A2V2CFL5	405.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1356616_13	1410650.JHWL01000003_gene2830	276.0	0	N/A	N/A
Pfam	UHGV-1356616_13	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1356616_13	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1356616_13	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_14	phrog_13908	152.6	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1356616_14	1410650.JHWL01000003_gene2831	103.0	5.11e-23	N/A	N/A
PHROG	UHGV-1356616_15	phrog_156	292.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1356616_15	1410650.JHWL01000003_gene2833	540.0	0	N/A	N/A
structural_annotation	UHGV-1356616_15	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_17	phrog_37329	49.2	0.000000000000058	N/A	unknown function
Pfam	UHGV-1356616_17	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-1356616_17	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1356616_17	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356616_18	537007.BLAHAN_05255	59.3	0.00000131	N/A	N/A
PHROG	UHGV-1356616_19	phrog_511	237.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1356616_19	1410650.JHWL01000003_gene2827	322.0	0	N/A	N/A
structural_annotation	UHGV-1356616_19	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-1356616_20	K06909	150.2	1.54143e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1356616_20	phrog_979	151.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1356616_20	UniRef90_UPI0006875436	636.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1356616_20	1410650.JHWL01000003_gene2834	636.0	0	N/A	N/A
Pfam	UHGV-1356616_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1356616_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1356616_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_21	phrog_606	65.8	7.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1356616_21	UniRef90_UPI001F487344	125.0	5.76e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1356616_21	397290.C810_05185	125.0	2.35e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-1356616_21	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1356616_21	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_22	phrog_3584	115.1	5.6e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1356616_22	1519439.JPJG01000060_gene1883	55.1	0.00000373	N/A	N/A
structural_annotation	UHGV-1356616_22	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_27	phrog_374	58.4	1.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1356616_27	375286.mma_2189	69.7	0.000000000000765	N/A	N/A
PHROG	UHGV-1356616_29	phrog_190	96.8	2.3e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356616_29	UniRef90_UPI0006C2AC63	131.0	2e-36	N/A	N/A
eggNOG-mapper	UHGV-1356616_29	1226322.HMPREF1545_00295	114.0	2.3e-30	N/A	N/A
Pfam	UHGV-1356616_29	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1356616_29	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_34	phrog_3136	132.8	1.2e-39	N/A	unknown function
UniRef90	UHGV-1356616_34	UniRef90_A0A6N7TMC2	121.0	1.85e-31	ASCH domain-containing protein	N/A
COG	UHGV-1356616_34	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1356616_34	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1356616_36	K00390	106.6	2.8e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1356616_36	phrog_424	120.7	1.1e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356616_36	UniRef90_UPI001D087498	425.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1356616_36	1408437.JNJN01000032_gene2312	335.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1356616_36	BrxP_00001	64.6	6.3e-19	BrxP	BREX
Pfam	UHGV-1356616_36	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1356616_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1356616_36	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356616_39	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356616_40	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356616_42	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-1356616_45	K22300	58.4	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1356616_45	phrog_8	49.7	0.000000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356616_45	UniRef90_E2ZIF0	117.0	6.56e-31	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1356616_45	748224.HMPREF9436_01444	117.0	1.1e-31	N/A	N/A
Pfam	UHGV-1356616_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1356616_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1356616_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-1356616_47	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
Pfam	UHGV-1356616_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1356616_49	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1356616_50	K14059	208.0	0	int; integrase	N/A
PHROG	UHGV-1356616_50	phrog_1	197.6	0	integrase	integration and excision
UniRef90	UHGV-1356616_50	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1356616_50	1507.HMPREF0262_00307	199.0	0	Phage integrase family	N/A
Pfam	UHGV-1356616_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1356616_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1356616_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1356616_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356616_51	UniRef90_A0A8F0WD75	79.3	0.00000000000000207	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1356616_51	1378168.N510_03079	70.5	0.00000000000212	N/A	N/A
eggNOG-mapper	UHGV-1356616_55	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-1356616_55	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-1356616_56	phrog_14030	141.7	4.40008e-42	N/A	unknown function
UniRef90	UHGV-1356616_56	UniRef90_R6LL81	246.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1356616_56	1121866.AUGK01000003_gene1444	95.9	5.76e-20	amidase activity	N/A
COG	UHGV-1356616_56	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A