UHGV-1356845 (vOTU-068693)

Viral Genome: UHGV-1356845

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1356845
vOTU ID	vOTU-068693
Representative Genome?	Yes
Source	GVD
Original genome ID	Shkoporov_2018_SRR6128101_NODE_84_length_33084_cov_48.344243
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.32 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.33
Jumbo phage	No

Genome content
Genome length (bp)	33,084
GC content	52.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	90%
Average CDS length (bps)	561.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1356845_2	phrog_9	292.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1356845_2	UniRef90_A0A0D8IV16	1087.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1356845_2	1226322.HMPREF1545_00113	885.0	0	Phage Terminase	N/A
Pfam	UHGV-1356845_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1356845_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1356845_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1356845_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_3	phrog_12	177.0	0	portal protein	head and packaging
UniRef90	UHGV-1356845_3	UniRef90_A0A0D8IVL0	641.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1356845_3	1226322.HMPREF1545_00114	520.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1356845_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1356845_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1356845_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1356845_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1356845_4	K06904	147.5	1.09301e-43	N/A	N/A
PHROG	UHGV-1356845_4	phrog_80	171.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1356845_4	UniRef90_A0A0D8IYC2	347.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1356845_4	1226322.HMPREF1545_00115	252.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1356845_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1356845_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1356845_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1356845_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_5	phrog_10	201.0	0	major head protein	head and packaging
UniRef90	UHGV-1356845_5	UniRef90_UPI000679B959	908.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1356845_5	1226322.HMPREF1545_00116	638.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1356845_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1356845_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1356845_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1356845_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_6	phrog_2550	80.8	8.8e-24	N/A	unknown function
UniRef90	UHGV-1356845_6	UniRef90_R5V091	91.7	2.59e-22	Phage related protein	N/A
eggNOG-mapper	UHGV-1356845_6	1226322.HMPREF1545_00117	95.1	1.86e-24	N/A	N/A
structural_annotation	UHGV-1356845_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_7	phrog_19734	87.7	1.3e-25	N/A	unknown function
UniRef90	UHGV-1356845_7	UniRef90_A0A3R6AW46	97.1	9.7e-24	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1356845_7	1235798.C817_04587	90.1	7.97e-22	N/A	N/A
structural_annotation	UHGV-1356845_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356845_8	1232446.BAIE02000002_gene829	99.0	1.65e-25	N/A	N/A
structural_annotation	UHGV-1356845_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_9	phrog_5	45.6	0.0000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-1356845_9	UniRef90_A0A1C6FG30	151.0	6.44597e-44	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1356845_9	908340.HMPREF9406_2573	130.0	1.36e-36	N/A	N/A
structural_annotation	UHGV-1356845_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_10	phrog_88	88.4	8.3e-26	major tail protein	tail
UniRef90	UHGV-1356845_10	UniRef90_UPI0018771F27	151.0	7.63708e-43	phage tail protein	N/A
eggNOG-mapper	UHGV-1356845_10	33035.JPJF01000039_gene278	90.5	8.41e-20	N/A	N/A
NCBIFam	UHGV-1356845_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1356845_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_13	phrog_58	100.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1356845_13	UniRef90_A0A2L0D4W7	228.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1356845_13	1160721.RBI_II00528	219.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1356845_13	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-1356845_13	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_14	phrog_33	79.4	7.6e-23	distal tail protein Dit	tail
UniRef90	UHGV-1356845_14	UniRef90_A0A1C6H6D2	187.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1356845_14	1160721.RBI_I01575	161.0	0	Phage tail protein	N/A
COG	UHGV-1356845_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1356845_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_15	phrog_1067	401.3	0	minor head protein	head and packaging
UniRef90	UHGV-1356845_15	UniRef90_A0A1C6H6B4	637.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1356845_15	1160721.RBI_I01574	431.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1356845_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1356845_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1356845_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1356845_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_16	phrog_16573	40.2	0.000000000031	N/A	unknown function
COG	UHGV-1356845_16	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-1356845_17	K07273	201.5	0	acm; lysozyme	N/A
PHROG	UHGV-1356845_17	phrog_291	160.7	0	endolysin	lysis
UniRef90	UHGV-1356845_17	UniRef90_UPI00164A97A0	513.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1356845_17	665956.HMPREF1032_02177	166.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1356845_17	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1356845_17	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1356845_17	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_18	phrog_937	53.2	0.0000000000000032	hemolysin	other
eggNOG-mapper	UHGV-1356845_18	428125.CLOLEP_00170	51.6	0.000000477	N/A	N/A
PHROG	UHGV-1356845_19	phrog_1129	60.5	2.2e-17	holin	lysis
UniRef90	UHGV-1356845_19	UniRef90_UPI00164CD48B	164.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1356845_19	1226322.HMPREF1545_00069	101.0	6.27e-27	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1356845_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1356845_19	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356845_20	UniRef90_UPI000A1C899A	75.5	2.3e-16	N/A	N/A
Pfam	UHGV-1356845_20	PF20124	N/A	N/A	N/A	DUF6514
structural_annotation	UHGV-1356845_20	PF20124	N/A	N/A	N/A	N/A
UniRef90	UHGV-1356845_21	UniRef90_UPI0006C78861	57.8	0.00000000332	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1356845_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1356845_22	K14059	98.0	1.5e-28	int; integrase	N/A
PHROG	UHGV-1356845_22	phrog_1	109.4	4.2e-32	integrase	integration and excision
UniRef90	UHGV-1356845_22	UniRef90_UPI0011C8F252	320.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1356845_22	1007096.BAGW01000023_gene159	232.0	0	Phage integrase family	N/A
Pfam	UHGV-1356845_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1356845_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1356845_22	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1356845_23	K07339	62.1	8.3e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1356845_23	phrog_353	86.3	1.8e-25	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356845_23	UniRef90_A0A1Q6T334	120.0	1.29e-34	Toxin HicA	N/A
eggNOG-mapper	UHGV-1356845_23	478749.BRYFOR_07601	89.0	6.94e-23	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1356845_23	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1356845_23	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1356845_23	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1356845_24	K18843	69.5	6.9e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-1356845_24	phrog_497	73.7	3.5e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1356845_24	UniRef90_A0A329TU28	192.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-1356845_24	657322.FPR_23750	192.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1356845_24	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1356845_24	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1356845_24	PF15919,COG1598	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1356845_25	1280664.AUIX01000005_gene2823	60.5	0.000000000978	N/A	N/A
KOfam	UHGV-1356845_26	K18830	71.4	1.4e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1356845_26	phrog_2967	50.5	0.00000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356845_26	UniRef90_G9RV47	127.0	3.47e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1356845_26	665956.HMPREF1032_00148	127.0	5.82e-36	N/A	N/A
Pfam	UHGV-1356845_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1356845_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1356845_26	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_29	phrog_2211	83.6	3.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1356845_29	935948.KE386495_gene1208	124.0	2.93e-35	N/A	N/A
structural_annotation	UHGV-1356845_30	PF13463,MF_01909,NF033788,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_33	phrog_25245	145.5	1.79366e-43	N/A	unknown function
UniRef90	UHGV-1356845_33	UniRef90_UPI001A9B205E	223.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1356845_33	657322.FPR_26620	152.0	7.00649e-45	3D domain	N/A
Pfam	UHGV-1356845_33	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1356845_33	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1356845_33	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_34	phrog_30822	44.4	0.0000000000018	N/A	unknown function
UniRef90	UHGV-1356845_34	UniRef90_UPI00164AA766	65.5	0.0000000000212	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1356845_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1356845_34	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356845_37	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_40	phrog_2872	219.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356845_40	UniRef90_A0A372V4A8	298.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1356845_40	1345695.CLSA_c30180	288.0	0	AAA domain	N/A
Pfam	UHGV-1356845_40	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1356845_40	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_41	phrog_18107	102.5	4.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1356845_41	476272.RUMHYD_02831	165.0	0	N/A	N/A
structural_annotation	UHGV-1356845_41	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_42	phrog_3490	124.3	7.9e-37	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356845_42	UniRef90_A0A372V4F7	244.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356845_42	476272.RUMHYD_01740	189.0	0	ERCC4 domain	N/A
Pfam	UHGV-1356845_42	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1356845_42	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1356845_42	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1356845_43	K02316	83.1	3.4e-24	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1356845_43	phrog_11992	103.2	3.3e-30	N/A	unknown function
UniRef90	UHGV-1356845_43	UniRef90_A0A372V3Z0	171.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1356845_43	742738.HMPREF9460_02494	85.9	1e-18	CHC2 zinc finger	N/A
PADLOC	UHGV-1356845_43	drt-cluster192	72.9	7.2e-21	DRT	DRT
Pfam	UHGV-1356845_43	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1356845_43	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1356845_43	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_44	phrog_8841	467.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1356845_44	UniRef90_A0A372V3W4	916.0	0	N/A	N/A
eggNOG-mapper	UHGV-1356845_44	742738.HMPREF9460_02495	588.0	0	N/A	N/A
Pfam	UHGV-1356845_44	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1356845_44	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1356845_44	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356845_44	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_47	phrog_799	155.9	0	DNA methyltransferase	other
UniRef90	UHGV-1356845_47	UniRef90_UPI000AAF359D	212.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1356845_47	1519439.JPJG01000060_gene1874	212.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-1356845_47	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1356845_47	PF05869,MF_01872,NF000058,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1356845_49	PF19881	N/A	N/A	N/A	N/A
PHROG	UHGV-1356845_53	phrog_36	87.0	2.3e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-1356845_53	UniRef90_A0A3D3FGT2	143.0	2.40995e-41	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1356845_53	445972.ANACOL_00233	90.5	2.92e-21	N/A	N/A
structural_annotation	UHGV-1356845_53	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A