UHGV-1357460 (vOTU-124588)

Viral Genome: UHGV-1357460

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1357460
vOTU ID	vOTU-124588
Representative Genome?	Yes
Source	GVD
Original genome ID	Zuo_2017_SRR5677815_NODE_25_length_31211_cov_76.836693
Associated BioSample	SAMN06019369
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.72
Jumbo phage	No

Genome content
Genome length (bp)	31,211
GC content	42.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	96%
Average CDS length (bps)	766.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357460_1	phrog_581	235.5	0	minor head protein	head and packaging
UniRef90	UHGV-1357460_1	UniRef90_A0A6I3IBZ7	367.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1357460_1	1282664.H354_06636	404.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1357460_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-1357460_1	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_2	phrog_533	279.3	0	portal protein	head and packaging
UniRef90	UHGV-1357460_2	UniRef90_UPI001EFBE2BA	976.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1357460_2	1282664.H354_06626	663.0	0	N/A	N/A
Pfam	UHGV-1357460_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1357460_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_3	K06909	78.0	1.3e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357460_3	phrog_10250	69.5	4.2e-20	N/A	unknown function
UniRef90	UHGV-1357460_3	UniRef90_UPI00069F6A29	904.0	0	terminase	N/A
eggNOG-mapper	UHGV-1357460_3	1282664.H354_06621	706.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1357460_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357460_3	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_4	K07474	126.1	5e-37	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1357460_4	phrog_51	144.7	4.30199e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1357460_4	UniRef90_UPI00066EF1F7	258.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1357460_4	764299.STRIC_2128	167.0	0	Terminase small subunit	N/A
Pfam	UHGV-1357460_4	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1357460_4	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1357460_4	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357460_5	UniRef90_A0A1H9IMX6	124.0	4.13e-34	Phage transcriptional activator, RinA family	N/A
NCBIFam	UHGV-1357460_5	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1357460_5	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_6	phrog_2882	191.4	0	DNA methyltransferase	other
UniRef90	UHGV-1357460_6	UniRef90_UPI0006611DD5	313.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1357460_6	565653.EGBG_01954	177.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1357460_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-1357460_7	562981.HMPREF0428_01830	81.6	5.08e-17	N/A	N/A
structural_annotation	UHGV-1357460_10	NF007271	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_12	phrog_3745	71.4	6.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-1357460_12	1423734.JCM14202_3068	54.3	0.0000000074	N/A	N/A
KOfam	UHGV-1357460_13	K01160	53.6	0.0000000000000065	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1357460_13	phrog_140	106.6	2e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357460_13	UniRef90_UPI001379A768	181.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1357460_13	1123315.AUIP01000003_gene219	180.0	0	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1357460_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1357460_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1357460_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_14	phrog_16687	88.9	3.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1357460_14	1123511.KB905868_gene197	62.8	0.00000000000547	N/A	N/A
KOfam	UHGV-1357460_16	K07505	422.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1357460_16	phrog_2597	1214.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357460_16	UniRef90_UPI00066B3960	1503.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1357460_16	936580.HMPREF1516_0733	1019.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1357460_16	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1357460_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1357460_16	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1357460_16	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_17	K17677	368.1	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1357460_17	phrog_16	283.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357460_17	UniRef90_UPI00066ACFC6	1020.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1357460_17	1123309.AQYB01000025_gene1732	803.0	0	helicase	N/A
PADLOC	UHGV-1357460_17	mREase_IV_00005	142.6	3.30006e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1357460_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1357460_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1357460_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1357460_17	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_18	phrog_2698	214.3	0	N/A	unknown function
UniRef90	UHGV-1357460_18	UniRef90_A0A4V0ECJ9	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357460_18	936580.HMPREF1516_0737	241.0	0	N/A	N/A
structural_annotation	UHGV-1357460_18	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_19	phrog_124	255.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357460_19	UniRef90_UPI00066A31E3	613.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1357460_19	1403946.Q615_SPAC00127G0154	454.0	0	AAA domain	N/A
Pfam	UHGV-1357460_19	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1357460_19	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_20	K03546	63.4	2.7e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1357460_20	phrog_1499	499.6	0	N/A	unknown function
UniRef90	UHGV-1357460_20	UniRef90_UPI00066DDE39	752.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1357460_20	1140001.I571_01812	560.0	0	AAA domain	N/A
Pfam	UHGV-1357460_20	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1357460_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1357460_20	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357460_25	UniRef90_A0A6M0L972	95.5	2.47e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357460_25	861530.ALOZ01000074_gene991	87.8	5.3e-22	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-1357460_25	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_26	K01356	97.9	1.5e-28	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1357460_26	phrog_4	117.5	1.4e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-1357460_26	UniRef90_UPI00066E894B	421.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357460_26	1423734.JCM14202_3727	189.0	0	Peptidase S24-like	N/A
PADLOC	UHGV-1357460_26	retron_type_VI_hth_cluster2_1	40.6	0.000000000051	N/A	Retron
Pfam	UHGV-1357460_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1357460_26	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1357460_26	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1357460_26	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_27	phrog_27136	133.9	4.9e-40	N/A	unknown function
UniRef90	UHGV-1357460_27	UniRef90_A0A413B176	131.0	1.33e-35	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1357460_27	1282664.H354_06486	127.0	4.37e-34	Short C-terminal domain	N/A
KOfam	UHGV-1357460_28	K14059	192.9	0	int; integrase	N/A
PHROG	UHGV-1357460_28	phrog_1	213.1	0	integrase	integration and excision
UniRef90	UHGV-1357460_28	UniRef90_UPI00066BD636	706.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1357460_28	1158614.I592_03367	286.0	0	Phage integrase family	N/A
Pfam	UHGV-1357460_28	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1357460_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357460_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1357460_28	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_29	phrog_1309	170.8	0	endolysin	lysis
UniRef90	UHGV-1357460_29	UniRef90_UPI00128D03D8	402.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1357460_29	1314.HKU360_01469	199.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1357460_29	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1357460_29	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1357460_29	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1357460_29	PF19127,PF05257,TIGR04035,TIGR02594,COG5263	N/A	N/A	N/A	N/A
KOfam	UHGV-1357460_30	K06558	71.8	6.1e-21	MSR1, CD204; macrophage scavenger receptor 1	N/A
PHROG	UHGV-1357460_30	phrog_32123	853.1	0	N/A	unknown function
UniRef90	UHGV-1357460_30	UniRef90_UPI0009E45001	769.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1357460_30	997830.HMPREF1124_0614	612.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1357460_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1357460_30	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-1357460_30	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_31	phrog_608	64.7	6.8e-19	holin	lysis
UniRef90	UHGV-1357460_31	UniRef90_UPI00066CB494	198.0	0	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-1357460_31	1336234.JAGN01000004_gene510	71.2	0.0000000000000254	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1357460_31	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1357460_31	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_32	phrog_4257	100.4	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1357460_32	1239381.K4JW58_9CAUD	63.9	0.000000000064	N/A	N/A
PHROG	UHGV-1357460_34	phrog_372	353.8	0	tail protein	tail
UniRef90	UHGV-1357460_34	UniRef90_UPI00065F928E	1030.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357460_34	1282664.H354_07750	445.0	0	N/A	N/A
Pfam	UHGV-1357460_34	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1357460_34	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_35	phrog_588	227.6	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1357460_35	UniRef90_UPI0018E9B800	495.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1357460_35	1282664.H354_06721	494.0	0	outer membrane autotransporter barrel domain protein	N/A
COG	UHGV-1357460_35	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
PHROG	UHGV-1357460_36	phrog_1194	63.6	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1357460_36	1282664.H354_06716	132.0	1.33e-38	N/A	N/A
structural_annotation	UHGV-1357460_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_37	phrog_1535	552.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1357460_37	UniRef90_A0A139R8H3	800.0	0	Phage tail length tape-measure protein	N/A
eggNOG-mapper	UHGV-1357460_37	1282664.H354_06711	784.0	0	Phage-related minor tail protein	N/A
COG	UHGV-1357460_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1357460_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_38	phrog_8355	108.0	2.9e-32	N/A	unknown function
UniRef90	UHGV-1357460_38	UniRef90_UPI0009E34DBA	179.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1357460_38	1282664.H354_06706	110.0	8.01e-31	N/A	N/A
Pfam	UHGV-1357460_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1357460_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1357460_39	phrog_8300	58.1	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1357460_39	1282664.H354_06701	77.8	1.68e-17	N/A	N/A
structural_annotation	UHGV-1357460_39	PF06854	N/A	N/A	N/A	N/A