UHGV-1357527 (vOTU-002555)

Viral Genome: UHGV-1357527

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1357527
vOTU ID	vOTU-002555
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0313327
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9664
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.99
Jumbo phage	No

Genome content
Genome length (bp)	51,049
GC content	44.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	740.40
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1357527_2	1449126.JQKL01000002_gene1688	84.3	0.0000000000000128	N/A	N/A
structural_annotation	UHGV-1357527_2	PF11134,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357527_3	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_5	phrog_14242	106.7	1.7e-31	major head protein	head and packaging
UniRef90	UHGV-1357527_5	UniRef90_A0A3D2CI53	339.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1357527_5	588581.Cpap_1528	127.0	4.28e-30	N/A	N/A
NCBIFam	UHGV-1357527_5	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1357527_5	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_7	phrog_156	99.7	2.7e-29	portal protein	head and packaging
eggNOG-mapper	UHGV-1357527_7	588581.Cpap_1526	278.0	0	N/A	N/A
KOfam	UHGV-1357527_10	K06909	282.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357527_10	phrog_3717	201.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357527_10	UniRef90_A0A329MU22	462.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1357527_10	696281.Desru_1088	438.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1357527_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1357527_10	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1357527_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357527_10	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_11	phrog_606	59.4	6.5e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1357527_11	UniRef90_UPI001D02F64C	87.8	4.91e-19	DNA-packaging protein	N/A
Pfam	UHGV-1357527_11	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1357527_11	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_14	phrog_1257	54.3	0.0000000000000026	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1357527_14	UniRef90_A0A3E4LX24	96.7	6.67e-24	XRE family transcriptional regulator	N/A
KOfam	UHGV-1357527_16	K14059	215.2	0	int; integrase	N/A
PHROG	UHGV-1357527_16	phrog_1	183.3	0	integrase	integration and excision
UniRef90	UHGV-1357527_16	UniRef90_UPI0019D2908B	267.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1357527_16	887325.HMPREF0381_0346	237.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1357527_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357527_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1357527_16	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357527_17	935845.JADQ01000019_gene4221	58.9	0.0000000132	N/A	N/A
KOfam	UHGV-1357527_19	K01356	99.8	4.6e-29	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1357527_19	phrog_4	123.8	1.5e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-1357527_19	UniRef90_A0A2V2FXZ1	193.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1357527_19	246199.CUS_5911	133.0	6.18e-36	N/A	N/A
Pfam	UHGV-1357527_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1357527_19	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1357527_19	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1357527_19	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_23	phrog_3657	251.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1357527_23	1567011.A0A0A7RUE9_9VIRU	182.0	0	N/A	N/A
PHROG	UHGV-1357527_24	phrog_1227	266.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357527_24	UniRef90_A0A1Y3RPZ6	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357527_24	1395513.P343_12795	192.0	0	N/A	N/A
Pfam	UHGV-1357527_24	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1357527_24	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1357527_24	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_27	phrog_4880	178.6	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357527_27	UniRef90_R6WQA7	228.0	0	DnaD and phage-associated domain protein	N/A
eggNOG-mapper	UHGV-1357527_27	272562.CA_C1934	141.0	6.24e-38	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1357527_27	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1357527_27	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-1357527_27	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_28	phrog_9804	119.7	2.1e-35	N/A	unknown function
UniRef90	UHGV-1357527_28	UniRef90_A0A3D1LDS2	115.0	8.7e-29	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1357527_28	1121344.JHZO01000003_gene981	125.0	2.25e-33	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1357527_28	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1357527_28	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1357527_29	K07729	41.8	0.000000000018	K07729; putative transcriptional regulator	N/A
Pfam	UHGV-1357527_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357527_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1357527_30	K00390	80.8	1.8e-24	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1357527_30	phrog_424	84.6	4.2e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1357527_30	UniRef90_A0A2N0K787	635.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1357527_30	1235800.C819_02256	603.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1357527_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1357527_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1357527_30	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1357527_34	K03111	139.0	5.10003e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1357527_34	phrog_44	132.8	2.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357527_34	UniRef90_R6TSJ9	169.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1357527_34	428125.CLOLEP_03546	127.0	1.52e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1357527_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1357527_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1357527_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1357527_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357527_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_36	phrog_18716	150.5	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1357527_36	UniRef90_A0A1C5TA90	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357527_36	1029718.SFBM_0379	135.0	3.45e-38	N/A	N/A
Pfam	UHGV-1357527_36	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1357527_36	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_37	phrog_22543	42.9	0.00000000000069	N/A	unknown function
Pfam	UHGV-1357527_38	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-1357527_38	PF20037	N/A	N/A	N/A	N/A
Pfam	UHGV-1357527_39	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1357527_39	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1357527_40	K17398	151.6	4.2039e-45	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-1357527_40	phrog_116	159.1	0	DNA methyltransferase	other
UniRef90	UHGV-1357527_40	UniRef90_UPI000464CDF8	328.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1357527_40	1384065.JAGS01000001_gene3108	328.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1357527_40	MTase_II_00058	112.7	6.8e-34	Type II methyltransferase	RM
Pfam	UHGV-1357527_40	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1357527_40	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1357527_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1357527_40	PF00145,MF_02126,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357527_41	UniRef90_A0A8J7KTR2	104.0	7.82e-26	N/A	N/A
Pfam	UHGV-1357527_41	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1357527_41	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_44	phrog_6721	63.1	7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1357527_44	545696.HOLDEFILI_00942	127.0	1.53e-35	N/A	N/A
Pfam	UHGV-1357527_47	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1357527_48	phrog_4400	125.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1357527_48	357809.Cphy_2990	271.0	0	N/A	N/A
dbAPIS	UHGV-1357527_48	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
structural_annotation	UHGV-1357527_48	PF01743,MF_00957,NF008634,COG0617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357527_49	1203606.HMPREF1526_00222	89.4	2.87e-20	N/A	N/A
Pfam	UHGV-1357527_50	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
PHROG	UHGV-1357527_51	phrog_14770	86.0	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1357527_51	UniRef90_UPI001BB47D0E	1601.0	0	strawberry notch family protein	N/A
eggNOG-mapper	UHGV-1357527_51	1123288.SOV_4c02780	1162.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1357527_51	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-1357527_51	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-1357527_51	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1357527_51	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-1357527_53	1007096.BAGW01000017_gene815	65.1	0.00000000000094	N/A	N/A
KOfam	UHGV-1357527_55	K19304	112.9	3.6e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1357527_55	phrog_7767	104.1	9e-31	metallo-endopeptidase	other
UniRef90	UHGV-1357527_55	UniRef90_A0A7T5EM89	68.9	0.000000000767	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-1357527_55	665956.HMPREF1032_00102	142.0	1.24e-36	heme binding	N/A
Pfam	UHGV-1357527_55	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1357527_55	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1357527_55	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_56	phrog_4105	81.8	6.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1357527_56	397288.C806_00056	101.0	2.09e-26	N/A	N/A
PHROG	UHGV-1357527_57	phrog_30034	94.9	7.5e-28	N/A	unknown function
UniRef90	UHGV-1357527_57	UniRef90_A0A3D1XGA4	131.0	8.62e-35	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357527_57	1122971.BAME01000151_gene6566	102.0	6.25e-24	N/A	N/A
PHROG	UHGV-1357527_58	phrog_10993	204.1	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1357527_58	UniRef90_D4JYQ1	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357527_58	718252.FP2_16970	186.0	0	N/A	N/A
Pfam	UHGV-1357527_58	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1357527_58	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1357527_60	phrog_13589	45.8	3.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1357527_60	411471.SUBVAR_06929	331.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1357527_60	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-1357527_62	phrog_19111	141.6	4.30058e-42	N/A	unknown function
eggNOG-mapper	UHGV-1357527_62	1232443.BAIA02000078_gene14	70.1	0.00000000023	nuclear chromosome segregation	N/A
COG	UHGV-1357527_62	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1357527_63	1519439.JPJG01000060_gene1892	65.9	0.000000015	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1357527_63	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1357527_63	PF10651	N/A	N/A	N/A	N/A