UHGV-1357864 (vOTU-033378)

Viral Genome: UHGV-1357864

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1357864
vOTU ID	vOTU-033378
Representative Genome?	Yes
Source	GVD
Original genome ID	Shkoporov_2018_SRR6128040_NODE_18_length_27906_cov_12.742882
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.24 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9715
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.2
Jumbo phage	No

Genome content
Genome length (bp)	27,906
GC content	59.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	98%
Average CDS length (bps)	762.42
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357864_2	phrog_12	146.7	1.20512e-43	portal protein	head and packaging
UniRef90	UHGV-1357864_2	UniRef90_G9YSB8	459.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1357864_2	349161.Dred_2606	281.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1357864_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1357864_2	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1357864_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1357864_2	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1357864_3	K01358	120.2	2.4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1357864_3	phrog_94	170.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1357864_3	UniRef90_A0A3B8U126	164.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1357864_3	1232452.BAIB02000007_gene1626	149.0	9.3901e-42	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1357864_3	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1357864_3	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1357864_3	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_4	phrog_10	126.2	2e-37	major head protein	head and packaging
UniRef90	UHGV-1357864_4	UniRef90_A0A328U7P3	542.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1357864_4	1235792.C808_00086	418.0	0	Phage capsid family	N/A
Pfam	UHGV-1357864_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1357864_4	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1357864_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1357864_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1357864_4	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_5	phrog_749	78.2	7.1e-23	N/A	unknown function
UniRef90	UHGV-1357864_5	UniRef90_A0A7V7BBS9	73.6	0.00000000000000697	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1357864_5	1415774.U728_1251	71.6	0.00000000000000952	N/A	N/A
PHROG	UHGV-1357864_6	phrog_19734	128.7	2.7e-38	N/A	unknown function
UniRef90	UHGV-1357864_6	UniRef90_A0A6I7GNS7	162.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1357864_6	349161.Dred_2602	93.2	9.43e-23	N/A	N/A
structural_annotation	UHGV-1357864_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357864_7	33035.JPJF01000039_gene276	64.3	0.00000000000962	N/A	N/A
structural_annotation	UHGV-1357864_7	PF05657,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357864_8	UniRef90_A0A1C6FG30	142.0	2.19001e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1357864_8	908340.HMPREF9406_2573	117.0	2.05e-31	N/A	N/A
structural_annotation	UHGV-1357864_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_9	phrog_88	104.4	1.1e-30	major tail protein	tail
UniRef90	UHGV-1357864_9	UniRef90_G9YSC5	136.0	7.28e-37	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1357864_9	1195236.CTER_5106	82.4	6.6e-17	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1357864_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1357864_9	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357864_9	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_12	phrog_971	123.3	1.8e-36	endolysin	lysis
UniRef90	UHGV-1357864_12	UniRef90_R9QMA6	247.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1357864_12	1399942.U3PFW9_9CAUD	274.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1357864_12	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1357864_12	TIGR02675.1	N/A	N/A	tape measure protein	N/A
structural_annotation	UHGV-1357864_12	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_13	phrog_33	69.1	1e-19	distal tail protein Dit	tail
UniRef90	UHGV-1357864_13	UniRef90_A0A173Z1X4	196.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1357864_13	1123263.AUKY01000068_gene490	117.0	3.11e-29	tail component	N/A
COG	UHGV-1357864_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1357864_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_14	phrog_1067	353.0	0	minor head protein	head and packaging
UniRef90	UHGV-1357864_14	UniRef90_UPI001968120D	531.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1357864_14	1123263.AUKY01000068_gene489	379.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1357864_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1357864_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1357864_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1357864_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_15	phrog_24267	50.5	0.00000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1357864_15	936154.STP_1589	67.4	0.0000000118	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1357864_15	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-1357864_16	K21472	56.3	7.1e-16	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
UniRef90	UHGV-1357864_16	UniRef90_D1PRE6	407.0	0	Peptidase, M23 family	N/A
eggNOG-mapper	UHGV-1357864_16	411471.SUBVAR_05145	305.0	0	heme binding	N/A
Pfam	UHGV-1357864_16	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1357864_16	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1357864_16	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357864_17	33035.JPJF01000090_gene94	73.9	9.73e-16	N/A	N/A
PHROG	UHGV-1357864_18	phrog_443	47.8	0.00000000000034	holin	lysis
UniRef90	UHGV-1357864_18	UniRef90_UPI001C3BFF52	123.0	3e-35	Holin	N/A
eggNOG-mapper	UHGV-1357864_18	1469948.JPNB01000002_gene3855	88.6	2.42e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1357864_18	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1357864_18	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1357864_19	K06400	401.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1357864_19	phrog_95	392.2	0	integrase	integration and excision
UniRef90	UHGV-1357864_19	UniRef90_A0A2V2F5B5	1031.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1357864_19	1121468.AUBR01000008_gene2069	302.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1357864_19	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1357864_19	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1357864_19	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1357864_19	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1357864_19	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1357864_20	K02342	183.7	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1357864_20	phrog_192	156.4	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357864_20	UniRef90_UPI0015541994	102.0	1.94e-20	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-1357864_20	545695.TREAZ_0939	127.0	8.93e-32	DNA polymerase III	N/A
PADLOC	UHGV-1357864_20	cd06127	123.3	2.6e-36	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1357864_20	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1357864_20	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1357864_20	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
KOfam	UHGV-1357864_21	K01356	170.7	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1357864_21	phrog_4	129.8	2.4e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-1357864_21	UniRef90_UPI0012DD1ED5	298.0	0	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357864_21	411483.FAEPRAA2165_03041	233.0	0	N/A	N/A
Pfam	UHGV-1357864_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1357864_21	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1357864_21	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1357864_21	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357864_22	UniRef90_UPI001C11E9E5	85.1	2.07e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357864_22	887929.HMP0721_1290	49.3	0.000000658	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-1357864_22	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_23	phrog_130	155.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1357864_23	UniRef90_A0A1Y4TJS8	312.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1357864_23	1121342.AUCO01000004_gene621	148.0	3.37993e-41	Phage antirepressor protein	N/A
Pfam	UHGV-1357864_23	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1357864_23	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1357864_23	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357864_25	PF17259	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357864_27	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_29	phrog_1733	62.3	3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1357864_29	665956.HMPREF1032_03597	156.0	3.98e-37	DNA binding	N/A
COG	UHGV-1357864_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1357864_32	phrog_1366	246.4	0	N/A	unknown function
UniRef90	UHGV-1357864_32	UniRef90_A0A1I0CM14	333.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1357864_32	1410670.JHXF01000015_gene2269	318.0	0	AAA domain	N/A
Pfam	UHGV-1357864_32	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1357864_32	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-1357864_32	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357864_33	PF03838,MF_00130,TIGR00648,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-1357864_34	K18959	184.2	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-1357864_34	phrog_16	196.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357864_34	UniRef90_A0A316L8C8	475.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1357864_34	748224.HMPREF9436_01460	401.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-1357864_34	mREase_IV_00005	45.7	0.00000000000024	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1357864_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1357864_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1357864_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1357864_34	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357864_35	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1357864_36	phrog_1829	124.8	5.5e-37	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357864_36	UniRef90_K1S6P6	95.9	1.5e-22	Primase	N/A
eggNOG-mapper	UHGV-1357864_36	748224.HMPREF9436_01462	147.0	4.2e-39	Phage plasmid primase, P4 family	N/A
COG	UHGV-1357864_36	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A