UHGV-1358601 (vOTU-054821)

Viral Genome: UHGV-1358601

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1358601
vOTU ID	vOTU-054821
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0277400
Associated BioSample	SAMEA3664801
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.2
Jumbo phage	No

Genome content
Genome length (bp)	41,591
GC content	38.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	90%
Average CDS length (bps)	478.96
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1358601_1	phrog_4105	91.5	6.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1358601_1	411459.RUMOBE_00911	157.0	0	N/A	N/A
PHROG	UHGV-1358601_2	phrog_1129	94.1	7.5e-28	holin	lysis
UniRef90	UHGV-1358601_2	UniRef90_A0A412KF76	171.0	0	Holin	N/A
eggNOG-mapper	UHGV-1358601_2	1256908.HMPREF0373_00463	165.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1358601_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1358601_2	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1358601_3	K01448	107.1	1.9e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1358601_3	phrog_435	185.8	0	endolysin	lysis
UniRef90	UHGV-1358601_3	UniRef90_A0A1Q6KUK5	450.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_3	411490.ANACAC_00597	182.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-1358601_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1358601_3	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1358601_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1358601_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-1358601_4	K06400	227.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1358601_4	phrog_95	252.8	0	integrase	integration and excision
UniRef90	UHGV-1358601_4	UniRef90_A0A1Q6KI87	882.0	0	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_4	180332.JTGN01000010_gene4488	188.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1358601_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1358601_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1358601_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1358601_4	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_5	phrog_8545	55.8	7.8e-16	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1358601_5	UniRef90_UPI001C0EAFDF	145.0	1.23e-40	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-1358601_5	1304866.K413DRAFT_0836	138.0	1.43e-38	tRNA_anti-like	N/A
Pfam	UHGV-1358601_5	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1358601_5	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-1358601_7	K18830	70.6	3.1e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1358601_7	phrog_2967	65.5	8.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1358601_7	UniRef90_A0A1Q6KIG7	234.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1358601_7	1235797.C816_03553	112.0	1.43e-29	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1358601_7	retron_type_VI_hth_cluster2_1	48.5	0.00000000000017	N/A	Retron
Pfam	UHGV-1358601_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1358601_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1358601_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358601_11	PF11127	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358601_13	PF15513,NF007469	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_15	phrog_674	180.9	0	N/A	unknown function
UniRef90	UHGV-1358601_15	UniRef90_A0A3R6B153	459.0	0	N/A	N/A
eggNOG-mapper	UHGV-1358601_15	411460.RUMTOR_02065	167.0	0	N/A	N/A
Pfam	UHGV-1358601_15	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1358601_15	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_17	phrog_155	122.7	3e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358601_17	UniRef90_A0A412KFC1	432.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1358601_17	357809.Cphy_2988	223.0	0	ERF superfamily	N/A
Pfam	UHGV-1358601_17	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1358601_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1358601_17	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_18	phrog_72	53.2	0.0000000000000039	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1358601_18	1304866.K413DRAFT_1197	119.0	1.14e-31	N/A	N/A
PHROG	UHGV-1358601_19	phrog_7566	98.9	2.8e-29	N/A	unknown function
UniRef90	UHGV-1358601_19	UniRef90_A0A412KF94	209.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1358601_19	411902.CLOBOL_05695	55.5	0.0000000103	N/A	N/A
KOfam	UHGV-1358601_21	K01160	42.6	0.000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1358601_21	phrog_1682	74.8	1.2e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358601_21	UniRef90_A0A412FH46	254.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1358601_21	1235790.C805_00029	163.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1358601_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1358601_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1358601_21	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_22	phrog_19658	45.3	0.00000000000088	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1358601_22	1071400.LBUCD034_0926	114.0	2.9e-27	DnaD domain protein	N/A
COG	UHGV-1358601_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1358601_22	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1358601_23	K02315	151.1	9.80909e-45	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1358601_23	phrog_50	149.1	3.36312e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358601_23	UniRef90_A0A1Q6KIH9	450.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_23	742733.HMPREF9469_01844	236.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1358601_23	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1358601_23	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1358601_23	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358601_27	UniRef90_A0A0F0C7A4	88.2	1.69e-18	N/A	N/A
PHROG	UHGV-1358601_28	phrog_8684	98.1	3.9e-29	N/A	unknown function
UniRef90	UHGV-1358601_28	UniRef90_UPI001C0135E5	194.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1358601_28	1121097.JCM15093_2710	77.0	4.44e-16	YopX protein	N/A
Pfam	UHGV-1358601_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1358601_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
UniRef90	UHGV-1358601_29	UniRef90_R5R2P7	75.1	0.0000000000000098	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1358601_29	428127.EUBDOL_01238	95.1	2e-23	N/A	N/A
PHROG	UHGV-1358601_30	phrog_599	52.3	0.000000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1358601_30	UniRef90_A0A3R6D3K6	68.6	0.000000000000137	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1358601_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1358601_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1358601_30	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_32	phrog_874	165.2	0	N/A	unknown function
UniRef90	UHGV-1358601_32	UniRef90_A0A6N7W7Q7	196.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_32	411468.CLOSCI_00298	194.0	0	N/A	N/A
structural_annotation	UHGV-1358601_32	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_33	phrog_13489	43.3	0.0000000000068	N/A	unknown function
eggNOG-mapper	UHGV-1358601_33	1158602.I590_00660	48.1	0.00000484	N/A	N/A
KOfam	UHGV-1358601_34	K06223	107.2	2.1e-31	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1358601_34	phrog_56	93.0	4.6e-27	DNA methyltransferase	other
UniRef90	UHGV-1358601_34	UniRef90_UPI001A9C1B98	121.0	1.22e-32	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1358601_34	1511.CLOST_1547	133.0	1.81e-36	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1358601_34	MTase_II_00030	104.8	1.3e-30	Type II methyltransferase	RM
Pfam	UHGV-1358601_34	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1358601_34	COG0338	N/A	N/A	DNA-adenine methylase	N/A
KOfam	UHGV-1358601_39	K00390	71.6	7.1e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1358601_39	phrog_424	108.0	9.1e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1358601_39	UniRef90_A0A1Q6KUL6	586.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_39	1232452.BAIB02000007_gene1640	331.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1358601_39	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1358601_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1358601_39	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358601_42	UniRef90_A0A412KFA7	145.0	4.34403e-44	ABC transporter ATP-binding protein	N/A
PHROG	UHGV-1358601_47	phrog_31631	73.9	1.3e-21	N/A	unknown function
PHROG	UHGV-1358601_51	phrog_33130	90.8	7.7e-27	N/A	unknown function
UniRef90	UHGV-1358601_51	UniRef90_A0A3B9CD52	124.0	1.4e-35	S1-like domain-containing protein	N/A
structural_annotation	UHGV-1358601_51	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-1358601_52	K06909	211.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1358601_52	phrog_5653	97.3	1.8e-28	terminase large subunit	head and packaging
UniRef90	UHGV-1358601_52	UniRef90_A0A3R5WSV0	1087.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_52	33035.JPJF01000106_gene3136	315.0	0	Terminase small subunit	N/A
Pfam	UHGV-1358601_52	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1358601_52	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1358601_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1358601_52	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_53	phrog_533	246.2	0	portal protein	head and packaging
UniRef90	UHGV-1358601_53	UniRef90_A0A3R5WTT1	949.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1358601_53	476272.RUMHYD_01758	323.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1358601_53	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_55	phrog_556	85.0	6.7e-25	minor head protein	head and packaging
UniRef90	UHGV-1358601_55	UniRef90_UPI000E4A8F9F	117.0	4.13e-31	minor capsid protein	N/A
eggNOG-mapper	UHGV-1358601_55	476272.RUMHYD_01780	64.3	0.0000000000376	N/A	N/A
Pfam	UHGV-1358601_55	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1358601_55	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_56	phrog_581	217.6	0	minor head protein	head and packaging
UniRef90	UHGV-1358601_56	UniRef90_A0A6L5YIK0	571.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1358601_56	645991.Sgly_0338	167.0	5.04467e-43	N/A	N/A
Pfam	UHGV-1358601_56	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1358601_56	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358601_56	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1358601_57	1235790.C805_00057	60.8	0.0000000000163	N/A	N/A
structural_annotation	UHGV-1358601_57	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1358601_58	658655.HMPREF0988_00919	85.5	4.25e-19	N/A	N/A
eggNOG-mapper	UHGV-1358601_59	658655.HMPREF0988_00918	86.7	1.29e-21	N/A	N/A
PHROG	UHGV-1358601_60	phrog_16490	217.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1358601_60	397290.C810_01328	201.0	0	N/A	N/A
PHROG	UHGV-1358601_61	phrog_20016	216.2	0	N/A	unknown function
UniRef90	UHGV-1358601_61	UniRef90_A0A285PT46	156.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1358601_61	397290.C810_05214	222.0	0	N/A	N/A
structural_annotation	UHGV-1358601_61	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1358601_62	658655.HMPREF0988_00915	119.0	2.61e-30	N/A	N/A
PHROG	UHGV-1358601_63	phrog_1233	45.9	0.00000000000094	N/A	unknown function
eggNOG-mapper	UHGV-1358601_63	397290.C810_01336	120.0	3.66e-34	N/A	N/A
PHROG	UHGV-1358601_65	phrog_194	53.3	0.000000000000006	head scaffolding protein	head and packaging
UniRef90	UHGV-1358601_65	UniRef90_UPI000E538A87	112.0	1.98e-27	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1358601_65	476272.RUMHYD_01775	102.0	3.91e-24	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1358601_65	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1358601_66	phrog_544	134.7	6.8e-40	major head protein	head and packaging
UniRef90	UHGV-1358601_66	UniRef90_A0A395X7A1	363.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1358601_66	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-1358601_66	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_67	phrog_541	90.3	1.6e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1358601_67	476272.RUMHYD_01778	84.0	2.48e-18	N/A	N/A
PHROG	UHGV-1358601_68	phrog_3366	89.8	2.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1358601_68	1235790.C805_00078	157.0	0	N/A	N/A
structural_annotation	UHGV-1358601_68	PF20536,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358601_69	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_70	phrog_3099	83.9	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1358601_70	1235790.C805_00082	60.5	0.0000000048	N/A	N/A
structural_annotation	UHGV-1358601_70	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358601_71	UniRef90_A0A412KF72	291.0	0	RNA polymerase subunit sigma	N/A
structural_annotation	UHGV-1358601_71	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_72	phrog_706	122.8	2.4e-36	N/A	unknown function
UniRef90	UHGV-1358601_72	UniRef90_C7GBZ7	263.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1358601_72	1235790.C805_00084	133.0	1.82e-36	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1358601_72	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1358601_72	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_73	phrog_1535	109.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1358601_73	1280689.AUJC01000003_gene976	138.0	1.22e-30	phage tail tape measure protein	N/A
COG	UHGV-1358601_73	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1358601_74	phrog_1194	48.9	0.000000000000099	N/A	unknown function
eggNOG-mapper	UHGV-1358601_74	1120746.CCNL01000014_gene2106	105.0	1.23e-27	N/A	N/A
structural_annotation	UHGV-1358601_74	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_75	phrog_13879	285.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1358601_75	1120746.CCNL01000014_gene2107	357.0	0	N/A	N/A
structural_annotation	UHGV-1358601_75	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1358601_77	phrog_18725	84.6	5.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1358601_77	1226322.HMPREF1545_00062	89.0	3.13e-20	N/A	N/A
structural_annotation	UHGV-1358601_78	PF00386	N/A	N/A	N/A	N/A